Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1159G074 Amborella trichopoda HOM05D005690 ORTHO05D007075 1.1e-136 490.0 240 100.0
FAN10G0816 Fragaria x ananassa HOM05D005690 ORTHO05D007075 6.2e-84 314.7 227 70.5
Prupe.2G217200 Prunus persica HOM05D005690 ORTHO05D007075 3.1e-83 312.4 226 70.8
RcHm_v2.0_Chr1g0363981 Rosa chinensis HOM05D005690 ORTHO05D007075 3.1e-83 312.4 227 71.4
FAN01G0973 Fragaria x ananassa HOM05D005690 ORTHO05D007075 5.2e-83 311.6 227 70.0
TAR636G2049 Trochodendron aralioides HOM05D005690 ORTHO05D007075 6.8e-83 311.2 228 70.2
GSVIVG01016316001 Vitis vinifera HOM05D005690 ORTHO05D007075 6.8e-83 311.2 234 67.5
Nn2g13015 Nelumbo nucifera HOM05D005690 ORTHO05D007075 8.9e-83 310.8 196 77.6
Dinv11797 Davidia involucrata HOM05D005690 ORTHO05D007075 2.6e-82 309.3 227 70.0
MD01G1111700 Malus domestica HOM05D005690 ORTHO05D007075 3.4e-82 308.9 226 70.4
FvH4_7g20020 Fragaria vesca HOM05D005690 ORTHO05D007075 4.4e-82 308.5 227 69.6
FAN03G1698 Fragaria x ananassa HOM05D005690 ORTHO05D007075 4.4e-82 308.5 227 69.6
FAN06G0212 Fragaria x ananassa HOM05D005690 ORTHO05D007075 4.4e-82 308.5 227 69.6
MBI05_g11579_MAGBIO Magnolia biondii HOM05D005690 ORTHO05D007075 9.8e-82 307.4 196 81.1
Manes.07G103000 Manihot esculenta HOM05D005690 ORTHO05D007075 9.8e-82 307.4 204 75.0
Phvul.004G075000 Phaseolus vulgaris HOM05D005690 ORTHO05D007075 1.7e-81 306.6 209 73.2
CiPaw.02G175700 Carya illinoinensis HOM05D005690 ORTHO05D007075 2.2e-81 306.2 226 70.8
Cfa001602 Carpinus fangiana HOM05D005690 ORTHO05D007075 8.3e-81 304.3 222 70.7
Ciclev10032614m.g Citrus clementina HOM05D005690 ORTHO05D007075 1.1e-80 303.9 204 74.5
MD07G1177900 Malus domestica HOM05D005690 ORTHO05D007075 1.4e-80 303.5 204 74.0
TAR633G2147 Trochodendron aralioides HOM05D005690 ORTHO05D007075 1.9e-80 303.1 223 71.3
Duzib114G0556 Durio zibethinus HOM05D005690 ORTHO05D007075 3.2e-80 302.4 222 67.6
VMungo0464G0948 Vigna mungo HOM05D005690 ORTHO05D007075 5.4e-80 301.6 202 74.3
Potri.010G219000 Populus trichocarpa HOM05D005690 ORTHO05D007075 7.0e-80 301.2 231 67.1
Atru.chr12.697 Acer truncatum HOM05D005690 ORTHO05D007075 1.2e-79 300.4 226 68.1
Sabra08G0029500 Salix brachista HOM05D005690 ORTHO05D007075 1.2e-79 300.4 226 67.7
Cc02_g11390 Coffea canephora HOM05D005690 ORTHO05D007075 1.6e-79 300.1 178 80.9
Glyma.17G183500 Glycine max HOM05D005690 ORTHO05D007075 1.6e-79 300.1 204 73.5
Potri.008G042800 Populus trichocarpa HOM05D005690 ORTHO05D007075 1.6e-79 300.1 227 68.3
Thecc.10G069500 Theobroma cacao HOM05D005690 ORTHO05D007075 1.6e-79 300.1 203 73.4
Potri.010G219400 Populus trichocarpa HOM05D005690 ORTHO05D007075 2.7e-79 299.3 226 67.7
Atru.chr12.670 Acer truncatum HOM05D005690 ORTHO05D007075 4.6e-79 298.5 202 73.3
COL.COLO4_32034 Corchorus olitorius HOM05D005690 ORTHO05D007075 4.6e-79 298.5 223 70.4
Eucgr.J01111 Eucalyptus grandis HOM05D005690 ORTHO05D007075 6.0e-79 298.1 205 74.1
Haze_16926 Corylus avellana HOM05D005690 ORTHO05D007075 1.0e-78 297.4 204 75.0
Cpa.g.sc53.43 Carica papaya HOM05D005690 ORTHO05D007075 1.3e-78 297.0 220 70.0
Nitab4.5_0000476g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.3e-78 297.0 203 72.4
Gohir.A06G178200 Gossypium hirsutum HOM05D005690 ORTHO05D007075 1.7e-78 296.6 203 72.9
PGR044G2452 Punica granatum HOM05D005690 ORTHO05D007075 1.7e-78 296.6 238 65.5
CAN.G694.84 Capsicum annuum HOM05D005690 ORTHO05D007075 2.3e-78 296.2 226 66.4
Rhsim09G0153300 Rhododendron simsii HOM05D005690 ORTHO05D007075 3.0e-78 295.8 219 67.1
TPR.G36634 Trifolium pratense HOM05D005690 ORTHO05D007075 3.0e-78 295.8 215 68.8
Nitab4.5_0000233g0230 Nicotiana tabacum HOM05D005690 ORTHO05D007075 3.9e-78 295.4 203 71.9
Peaxi162Scf00108g00166 Petunia axillaris HOM05D005690 ORTHO05D007075 3.9e-78 295.4 219 68.0
Gohir.D06G176800 Gossypium hirsutum HOM05D005690 ORTHO05D007075 6.6e-78 294.7 203 72.4
Gorai.010G204700 Gossypium raimondii HOM05D005690 ORTHO05D007075 6.6e-78 294.7 203 72.4
Nitab4.5_0012288g0020 Nicotiana tabacum HOM05D005690 ORTHO05D007075 8.6e-78 294.3 227 65.2
Lj2g0014971 Lotus japonicus HOM05D005690 ORTHO05D007075 2.5e-77 292.7 202 72.8
Sabra10G0169300 Salix brachista HOM05D005690 ORTHO05D007075 2.5e-77 292.7 226 67.7
vmacro04884 Vaccinium macrocarpon HOM05D005690 ORTHO05D007075 5.6e-77 291.6 223 67.7
CsaV3_5G025890 Cucumis sativus L. HOM05D005690 ORTHO05D007075 9.5e-77 290.8 191 75.9
MSTRG.373 Avicennia marina HOM05D005690 ORTHO05D007075 1.6e-76 290.0 182 78.0
THA.LOC104802837 Tarenaya hassleriana HOM05D005690 ORTHO05D007075 1.6e-76 290.0 186 76.3
Lalb_Chr19g0129571 Lupinus albus HOM05D005690 ORTHO05D007075 2.1e-76 289.7 222 66.7
QL08p056659 Quercus lobata HOM05D005690 ORTHO05D007075 2.1e-76 289.7 223 66.8
Nitab4.5_0009003g0010 Nicotiana tabacum HOM05D005690 ORTHO05D007075 6.2e-76 288.1 224 64.7
SGA_v2.0_scaffold28G12052 Striga asiatica HOM05D005690 ORTHO05D007075 1.1e-75 287.3 174 77.6
MELO3C002879.2 Cucumis melo HOM05D005690 ORTHO05D007075 1.4e-75 287.0 191 75.4
HPP92_003607 Vanilla planifolia HOM05D005690 ORTHO05D007075 2.3e-75 286.2 218 67.0
Ca_04676_v3 Cicer arietinum L. HOM05D005690 ORTHO05D007075 3.1e-75 285.8 192 74.5
arahy.Tifrunner.gnm1.ann1.08HL34 Arachis hypogaea HOM05D005690 ORTHO05D007075 6.8e-75 284.6 203 70.4
CANSAT56G3535 Cannabis sativa HOM05D005690 ORTHO05D007075 6.8e-75 284.6 193 74.1
Solyc05g056090.3 Solanum lycopersicum HOM05D005690 ORTHO05D007075 6.8e-75 284.6 200 71.5
Sopen05g034500 Solanum pennellii HOM05D005690 ORTHO05D007075 6.8e-75 284.6 200 71.5
arahy.Tifrunner.gnm1.ann1.8E9GH8 Arachis hypogaea HOM05D005690 ORTHO05D007075 8.9e-75 284.3 202 70.3
Sed0011214 Sechium edule HOM05D005690 ORTHO05D007075 2.6e-74 282.7 191 74.3
PGSC0003DMG400023460 Solanum tuberosum HOM05D005690 ORTHO05D007075 2.6e-74 282.7 200 70.5
unitig_0.g529 Utricularia gibba HOM05D005690 ORTHO05D007075 4.4e-74 282.0 202 70.3
ECA232G2854 Erigeron canadensis HOM05D005690 ORTHO05D007075 5.8e-74 281.6 205 69.3
Rhsim03G0123000 Rhododendron simsii HOM05D005690 ORTHO05D007075 9.8e-74 280.8 235 61.3
Hma1.2p1_2080F.1_g313490 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 1.3e-73 280.4 229 62.0
Peaxi162Scf01175g00023 Petunia axillaris HOM05D005690 ORTHO05D007075 1.3e-73 280.4 217 65.9
Hund19342 Selenicereus undatus HOM05D005690 ORTHO05D007075 1.3e-73 280.4 193 71.5
Hma1.2p1_0453F.1_g156020 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 1.7e-73 280.0 183 74.3
Medtr6g033405 Medicago truncatula HOM05D005690 ORTHO05D007075 2.2e-73 279.6 204 70.1
Carub.0004s1755 Capsella rubella HOM05D005690 ORTHO05D007075 4.9e-73 278.5 194 71.1
Aa31LG9G7550 Aethionema arabicum HOM05D005690 ORTHO05D007075 6.4e-73 278.1 203 68.0
BcaB06g28872 Brassica carinata HOM05D005690 ORTHO05D007075 1.1e-72 277.3 216 66.2
TWI38G1302 Tripterygium wilfordii HOM05D005690 ORTHO05D007075 1.9e-72 276.6 194 71.1
AL4G31900 Arabidopsis lyrata HOM05D005690 ORTHO05D007075 3.2e-72 275.8 190 72.6
CDE04G0636 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 4.1e-72 275.4 195 70.3
HanXRQChr09g0246501 Helianthus annuus HOM05D005690 ORTHO05D007075 4.1e-72 275.4 205 67.8
HanXRQChr17g0563371 Helianthus annuus HOM05D005690 ORTHO05D007075 4.1e-72 275.4 199 68.8
Sed0019941 Sechium edule HOM05D005690 ORTHO05D007075 7.1e-72 274.6 232 63.4
CARHR130040 Cardamine hirsuta HOM05D005690 ORTHO05D007075 9.2e-72 274.2 190 72.1
Aqoxy6G02013 Aquilegia oxysepala HOM05D005690 ORTHO05D007075 2.7e-71 272.7 234 62.4
AT2G35790 Arabidopsis thaliana HOM05D005690 ORTHO05D007075 2.7e-71 272.7 194 70.1
BolC4t27955H Brassica oleracea HOM05D005690 ORTHO05D007075 2.7e-71 272.7 191 71.2
C04p64770 Brassica napus HOM05D005690 ORTHO05D007075 3.5e-71 272.3 191 71.2
Migut.F01989 Erythranthe guttata HOM05D005690 ORTHO05D007075 3.5e-71 272.3 205 68.3
Lsat_1_v5_gn_9_67140 Lactuca sativa HOM05D005690 ORTHO05D007075 3.5e-71 272.3 197 67.5
A04p27260 Brassica napus HOM05D005690 ORTHO05D007075 4.6e-71 271.9 191 71.2
BraA04t18224Z Brassica rapa HOM05D005690 ORTHO05D007075 4.6e-71 271.9 191 71.2
Zm00001eb064810 Zea mays HOM05D005690 ORTHO05D007075 7.8e-71 271.2 187 71.7
PSO339G2382 Papaver somniferum HOM05D005690 ORTHO05D007075 1.3e-70 270.4 232 61.2
Thhalv10017166m.g Eutrema salsugineum HOM05D005690 ORTHO05D007075 5.1e-70 268.5 194 67.5
PSO384G2564 Papaver somniferum HOM05D005690 ORTHO05D007075 5.1e-70 268.5 224 63.4
SalBow4G1295 Salvia bowleyana HOM05D005690 ORTHO05D007075 5.1e-70 268.5 206 65.0
Sp4g18050 Schrenkiella parvula HOM05D005690 ORTHO05D007075 6.6e-70 268.1 224 62.5
EL10Ac2g03578 Beta vulgaris HOM05D005690 ORTHO05D007075 1.5e-69 266.9 237 61.6
BcaC02g07668 Brassica carinata HOM05D005690 ORTHO05D007075 1.5e-69 266.9 191 71.2
BcaC01g05707 Brassica carinata HOM05D005690 ORTHO05D007075 1.9e-69 266.5 237 59.5
C03p22980 Brassica napus HOM05D005690 ORTHO05D007075 1.9e-69 266.5 237 59.5
AUR62027946 Chenopodium quinoa HOM05D005690 ORTHO05D007075 1.9e-69 266.5 205 63.9
A03p19730 Brassica napus HOM05D005690 ORTHO05D007075 3.3e-69 265.8 176 72.2
AUR62020766 Chenopodium quinoa HOM05D005690 ORTHO05D007075 1.6e-68 263.5 205 63.4
Ah.16g108410 Amaranthus hybridus HOM05D005690 ORTHO05D007075 1.8e-67 260.0 214 63.6
ClCG09G020510 Citrullus lanatus HOM05D005690 ORTHO05D007075 5.2e-67 258.5 166 75.9
SalBow3G1299 Salvia bowleyana HOM05D005690 ORTHO05D007075 5.2e-67 258.5 176 71.0
BcaB01g03881 Brassica carinata HOM05D005690 ORTHO05D007075 1.5e-66 256.9 152 79.6
CDE07G1130 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 7.6e-66 254.6 157 77.1
Os03g0853800 Oryza sativa ssp. japonica HOM05D005690 ORTHO05D007075 7.6e-66 254.6 159 78.0
Eucgr.J01110 Eucalyptus grandis HOM05D005690 ORTHO05D007075 3.8e-65 252.3 191 62.8
SEGI_15078 Sequoiadendron giganteum HOM05D005690 ORTHO05D007075 4.9e-65 251.9 178 69.7
CSS0000246 Camellia sinensis var. sinensis HOM05D005690 ORTHO05D007075 2.5e-53 213.0 188 60.6
Lj8C97T4 Lonicera japonica HOM05D005690 ORTHO05D007075 1.3e-52 210.7 121 81.8
Peaxi162Scf00108g00173 Petunia axillaris HOM05D005690 ORTHO05D007075 6.2e-52 208.4 121 79.3
Sc06g0001780 Simmondsia chinensis HOM05D005690 ORTHO05D007075 3.1e-51 206.1 120 79.2
CiPaw.01G275500 Carya illinoinensis HOM05D005690 ORTHO05D007075 5.8e-50 201.8 192 59.4
AagrBONN_evm.TU.Sc2ySwM_362.1612 Anthoceros agrestis HOM05D005690 ORTHO05D007075 3.0e-46 189.5 141 62.4
BcaB01g03882 Brassica carinata HOM05D005690 ORTHO05D007075 1.5e-45 187.2 111 76.6
Psat1g099440 Pisum sativum HOM05D005690 ORTHO05D007075 3.1e-43 179.5 165 57.0
Mapoly0033s0041 Marchantia polymorpha HOM05D005690 ORTHO05D007075 4.0e-43 179.1 186 46.8
Nitab4.5_0003072g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 6.9e-43 178.3 186 52.2
Pp3c10_15170 Physcomitrium patens HOM05D005690 ORTHO05D007075 9.9e-42 174.5 145 55.2
Mapoly0033s0042 Marchantia polymorpha HOM05D005690 ORTHO05D007075 1.3e-38 164.1 146 52.1
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 1.5e-34 150.6 174 46.0
SMO239G0063 Selaginella moellendorffii HOM05D005690 ORTHO05D007075 1.1e-29 134.4 143 42.7
Lalb_Chr01g0010161 Lupinus albus HOM05D005690 ORTHO05D007075 3.8e-25 119.4 68 79.4
Cre12.g540051 Chlamydomonas reinhardtii HOM05D005690 ORTHO05D007075 1.6e-15 87.4 152 31.6
Lalb_Chr01g0010151 Lupinus albus HOM05D005690 ORTHO05D007075 2.0e-13 80.5 88 47.7
MCO03G451 Micromonas commoda HOM05D005690 ORTHO05D007075 7.4e-13 78.6 210 29.5
CDE07G0610 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 8.2e-12 75.1 116 43.1
Nn2g10688 Nelumbo nucifera HOM05D005690 ORTHO05D007075 6.1e-07 58.9 85 44.7


User provided reference genes

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