Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1159G071 Amborella trichopoda HOM05D001765 ORTHO05D005876 1.5e-24 115.5 66 100.0
ATR0706G059 Amborella trichopoda HOM05D001765 ORTHO05D005876 2.5e-19 98.2 66 89.4
EL10Ac4g08905 Beta vulgaris HOM05D001765 ORTHO05D005876 2.5e-19 98.2 66 89.4
AUR62004747 Chenopodium quinoa HOM05D001765 ORTHO05D005876 2.5e-19 98.2 66 89.4
AUR62037504 Chenopodium quinoa HOM05D001765 ORTHO05D005876 2.5e-19 98.2 66 89.4
Gohir.A10G171300 Gossypium hirsutum HOM05D001765 ORTHO05D005876 4.2e-19 97.4 66 87.9
TAR365G0409 Trochodendron aralioides HOM05D001765 ORTHO05D005876 4.2e-19 97.4 66 89.4
Ah.04g162900 Amaranthus hybridus HOM05D001765 ORTHO05D005876 5.5e-19 97.1 66 87.9
Gohir.D10G178400 Gossypium hirsutum HOM05D001765 ORTHO05D005876 7.2e-19 96.7 66 87.9
Gorai.011G199400 Gossypium raimondii HOM05D001765 ORTHO05D005876 7.2e-19 96.7 66 87.9
MBI19_g07244_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D005876 7.2e-19 96.7 66 87.9
Nn4g25612 Nelumbo nucifera HOM05D001765 ORTHO05D005876 7.2e-19 96.7 66 87.9
TAR633G2429 Trochodendron aralioides HOM05D001765 ORTHO05D005876 7.2e-19 96.7 66 87.9
Nn3g21679 Nelumbo nucifera HOM05D001765 ORTHO05D005876 9.5e-19 96.3 66 86.4
Psat4g024600 Pisum sativum HOM05D001765 ORTHO05D005876 1.2e-18 95.9 66 86.4
SEGI_21194 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 1.2e-18 95.9 66 87.9
SEGI_31674 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 1.2e-18 95.9 66 87.9
TPR.G16856 Trifolium pratense HOM05D001765 ORTHO05D005876 1.2e-18 95.9 66 86.4
GSVIVG01035017001 Vitis vinifera HOM05D001765 ORTHO05D005876 1.2e-18 95.9 66 86.4
PSO210G5285 Papaver somniferum HOM05D001765 ORTHO05D005876 1.6e-18 95.5 66 86.4
PSO761G0153 Papaver somniferum HOM05D001765 ORTHO05D005876 1.6e-18 95.5 66 86.4
CANSAT78G1829 Cannabis sativa HOM05D001765 ORTHO05D005876 2.1e-18 95.1 66 84.8
ClCG06G004640 Citrullus lanatus HOM05D001765 ORTHO05D005876 2.1e-18 95.1 66 86.4
Lalb_Chr13g0298421 Lupinus albus HOM05D001765 ORTHO05D005876 2.1e-18 95.1 66 86.4
Sc13g0006420 Simmondsia chinensis HOM05D001765 ORTHO05D005876 2.1e-18 95.1 66 86.4
Prupe.1G073200 Prunus persica HOM05D001765 ORTHO05D005876 2.8e-18 94.7 66 84.8
Cpa.g.sc9.87 Carica papaya HOM05D001765 ORTHO05D005876 3.6e-18 94.4 66 84.8
Ca_21450_v3 Cicer arietinum L. HOM05D001765 ORTHO05D005876 3.6e-18 94.4 66 84.8
Duzib052G0074 Durio zibethinus HOM05D001765 ORTHO05D005876 3.6e-18 94.4 66 84.8
Duzib151G0385 Durio zibethinus HOM05D001765 ORTHO05D005876 3.6e-18 94.4 66 84.8
Gohir.A09G065500 Gossypium hirsutum HOM05D001765 ORTHO05D005876 3.6e-18 94.4 66 84.8
Gorai.006G079200 Gossypium raimondii HOM05D001765 ORTHO05D005876 3.6e-18 94.4 66 84.8
MD13G1156300 Malus domestica HOM05D001765 ORTHO05D005876 3.6e-18 94.4 66 84.8
Thecc.04G297600 Theobroma cacao HOM05D001765 ORTHO05D005876 3.6e-18 94.4 66 84.8
arahy.Tifrunner.gnm1.ann1.03CYAA Arachis hypogaea HOM05D001765 ORTHO05D005876 4.7e-18 94.0 66 84.8
CDE12G0657 Ceratophyllum demersum HOM05D001765 ORTHO05D005876 4.7e-18 94.0 66 86.4
THA.LOC104802705 Tarenaya hassleriana HOM05D001765 ORTHO05D005876 4.7e-18 94.0 66 84.8
MELO3C023334.2 Cucumis melo HOM05D001765 ORTHO05D005876 6.1e-18 93.6 66 84.8
CsaV3_2G015100 Cucumis sativus L. HOM05D001765 ORTHO05D005876 6.1e-18 93.6 66 84.8
Glyma.07G241300 Glycine max HOM05D001765 ORTHO05D005876 6.1e-18 93.6 66 84.8
Glyma.17G032500 Glycine max HOM05D001765 ORTHO05D005876 6.1e-18 93.6 66 84.8
Lalb_Chr07g0182091 Lupinus albus HOM05D001765 ORTHO05D005876 6.1e-18 93.6 66 84.8
MD16G1157200 Malus domestica HOM05D001765 ORTHO05D005876 6.1e-18 93.6 66 83.3
Manes.03G202700 Manihot esculenta HOM05D001765 ORTHO05D005876 6.1e-18 93.6 66 84.8
Phvul.003G112500 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 6.1e-18 93.6 66 84.8
Sed0022335 Sechium edule HOM05D001765 ORTHO05D005876 6.1e-18 93.6 66 84.8
TWI73G0761 Tripterygium wilfordii HOM05D001765 ORTHO05D005876 6.1e-18 93.6 66 83.3
Ciclev10005673m.g Citrus clementina HOM05D001765 ORTHO05D005876 8.0e-18 93.2 66 84.8
CiPaw.01G139800 Carya illinoinensis HOM05D001765 ORTHO05D005876 1.0e-17 92.8 66 83.3
Prupe.1G122100 Prunus persica HOM05D001765 ORTHO05D005876 1.0e-17 92.8 66 83.3
Sabra10G0110100 Salix brachista HOM05D001765 ORTHO05D005876 1.0e-17 92.8 66 83.3
TWI09G0718 Tripterygium wilfordii HOM05D001765 ORTHO05D005876 1.0e-17 92.8 66 83.3
ATR1159G066 Amborella trichopoda HOM05D001765 ORTHO05D005876 1.4e-17 92.4 63 84.1
FvH4_4g19461 Fragaria vesca HOM05D001765 ORTHO05D005876 1.4e-17 92.4 66 83.3
Gohir.D09G064400 Gossypium hirsutum HOM05D001765 ORTHO05D005876 1.4e-17 92.4 66 83.3
Lj4g0023600 Lotus japonicus HOM05D001765 ORTHO05D005876 1.4e-17 92.4 66 83.3
PGR031G3587 Punica granatum HOM05D001765 ORTHO05D005876 1.4e-17 92.4 66 83.3
RcHm_v2.0_Chr4g0424571 Rosa chinensis HOM05D001765 ORTHO05D005876 1.4e-17 92.4 66 83.3
Sed0021764 Sechium edule HOM05D001765 ORTHO05D005876 1.4e-17 92.4 66 83.3
THA.LOC104818892 Tarenaya hassleriana HOM05D001765 ORTHO05D005876 1.4e-17 92.4 66 83.3
Ciclev10016311m.g Citrus clementina HOM05D001765 ORTHO05D005876 1.8e-17 92.0 66 83.3
Phvul.008G245800 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 1.8e-17 92.0 65 84.6
Phvul.009G074533 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 1.8e-17 92.0 65 84.6
Potri.008G107100 Populus trichocarpa HOM05D001765 ORTHO05D005876 1.8e-17 92.0 66 83.3
Potri.010G142400 Populus trichocarpa HOM05D001765 ORTHO05D005876 1.8e-17 92.0 66 83.3
Haze_01276 Corylus avellana HOM05D001765 ORTHO05D005876 2.3e-17 91.7 66 83.3
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 2.3e-17 91.7 66 83.3
VMungo1215G2482 Vigna mungo HOM05D001765 ORTHO05D005876 2.3e-17 91.7 66 83.3
Aa31LG11G7990 Aethionema arabicum HOM05D001765 ORTHO05D005876 3.0e-17 91.3 66 81.8
Aqoxy5G01535 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 3.0e-17 91.3 66 83.3
CiPaw.02G075900 Carya illinoinensis HOM05D001765 ORTHO05D005876 3.0e-17 91.3 66 81.8
FAN07G0091 Fragaria x ananassa HOM05D001765 ORTHO05D005876 3.0e-17 91.3 66 81.8
Sabra08G0081000 Salix brachista HOM05D001765 ORTHO05D005876 3.0e-17 91.3 66 81.8
Thhalv10004753m.g Eutrema salsugineum HOM05D001765 ORTHO05D005876 4.0e-17 90.9 66 81.8
Aqoxy1G02157 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 5.2e-17 90.5 66 83.3
BcaC03g17719 Brassica carinata HOM05D001765 ORTHO05D005876 5.2e-17 90.5 66 81.8
C02p57300 Brassica napus HOM05D001765 ORTHO05D003527 5.2e-17 90.5 66 81.8
BolC2t11799H Brassica oleracea HOM05D001765 ORTHO05D003527 5.2e-17 90.5 66 81.8
BraA02t08788Z Brassica rapa HOM05D001765 ORTHO05D005876 5.2e-17 90.5 66 81.8
Sp2g19740 Schrenkiella parvula HOM05D001765 ORTHO05D005876 5.2e-17 90.5 66 81.8
SpUn0021_0110 Schrenkiella parvula HOM05D001765 ORTHO05D005876 5.2e-17 90.5 66 81.8
vmacro08062 Vaccinium macrocarpon HOM05D001765 ORTHO05D005876 5.2e-17 90.5 65 86.2
VMungo0647G0513 Vigna mungo HOM05D000091 ORTHO05D005533 5.2e-17 90.5 65 83.1
Atru.chr4.3029 Acer truncatum HOM05D001765 ORTHO05D005876 6.8e-17 90.1 66 81.8
QL06p011625 Quercus lobata HOM05D001765 ORTHO05D005876 6.8e-17 90.1 66 80.3
Aqoxy5G02976 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 8.9e-17 89.7 66 81.8
A02p38130 Brassica napus HOM05D001765 ORTHO05D003527 8.9e-17 89.7 66 81.8
CSS0034555 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D005876 1.5e-16 89.0 66 86.4
CARHR182130 Cardamine hirsuta HOM05D001765 ORTHO05D005876 1.5e-16 89.0 66 80.3
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 1.5e-16 89.0 66 80.3
BcaC06g30699 Brassica carinata HOM05D001765 ORTHO05D005876 2.0e-16 88.6 66 78.8
BcaNung02601 Brassica carinata HOM05D001765 ORTHO05D005876 2.0e-16 88.6 66 78.8
A06p38370 Brassica napus HOM05D001765 ORTHO05D005876 2.0e-16 88.6 66 78.8
C07p39890 Brassica napus HOM05D001765 ORTHO05D005876 2.0e-16 88.6 66 78.8
BolC7t44518H Brassica oleracea HOM05D001765 ORTHO05D005876 2.0e-16 88.6 66 78.8
BraA06t26751Z Brassica rapa HOM05D001765 ORTHO05D005876 2.0e-16 88.6 66 78.8
Hma1.2p1_0013F.1_g008730 Hydrangea macrophylla HOM05D001765 ORTHO05D005876 2.0e-16 88.6 66 86.4
Hma1.2p1_0078F.1_g040010 Hydrangea macrophylla HOM05D001765 ORTHO05D005876 2.0e-16 88.6 66 86.4
CSS0002630 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D005876 2.6e-16 88.2 67 85.1
Eucgr.A00351 Eucalyptus grandis HOM05D001765 ORTHO05D005876 3.4e-16 87.8 66 80.3
COL.COLO4_11257 Corchorus olitorius HOM05D001765 ORTHO05D005876 4.4e-16 87.4 66 80.3
Actinidia40362 Actinidia chinensis HOM05D001765 ORTHO05D005876 5.7e-16 87.0 66 83.3
Dinv44303 Davidia involucrata HOM05D001765 ORTHO05D005876 5.7e-16 87.0 66 84.8
AagrBONN_evm.TU.Sc2ySwM_362.810 Anthoceros agrestis HOM05D001765 ORTHO05D005876 7.5e-16 86.7 68 80.9
AL8G23110 Arabidopsis lyrata HOM05D001765 ORTHO05D005876 7.5e-16 86.7 66 77.3
Rhsim04G0234200 Rhododendron simsii HOM05D001765 ORTHO05D005876 7.5e-16 86.7 66 84.8
Lj6P689T37 Lonicera japonica HOM05D001765 ORTHO05D005876 9.8e-16 86.3 66 83.3
Mapoly0023s0038 Marchantia polymorpha HOM05D001765 ORTHO05D005876 9.8e-16 86.3 68 80.9
Pp3c14_13970 Physcomitrium patens HOM05D001765 ORTHO05D005876 1.3e-15 85.9 69 79.7
Carub.0008s0928 Capsella rubella HOM05D001765 ORTHO05D005876 1.7e-15 85.5 66 77.3
AagrBONN_evm.TU.Sc2ySwM_228.5656 Anthoceros agrestis HOM05D001765 ORTHO05D005876 2.2e-15 85.1 68 79.4
AT5G49400 Arabidopsis thaliana HOM05D001765 ORTHO05D005876 2.2e-15 85.1 66 77.3
Migut.N00048 Erythranthe guttata HOM05D001765 ORTHO05D005876 2.2e-15 85.1 66 81.8
DCAR_002506 Daucus carota HOM05D001765 ORTHO05D005876 2.8e-15 84.7 66 83.3
Cc03_g00980 Coffea canephora HOM05D001765 ORTHO05D005876 4.9e-15 84.0 64 79.7
Peaxi162Scf00065g00002 Petunia axillaris HOM05D001765 ORTHO05D005876 4.9e-15 84.0 68 79.4
CAN.G874.72 Capsicum annuum HOM05D001765 ORTHO05D005876 8.3e-15 83.2 67 80.6
unitig_749.g13366 Utricularia gibba HOM05D001765 ORTHO05D005876 8.3e-15 83.2 67 79.1
Nitab4.5_0000276g0120 Nicotiana tabacum HOM05D001765 ORTHO05D005876 1.1e-14 82.8 66 80.3
Nitab4.5_0000456g0120 Nicotiana tabacum HOM05D001765 ORTHO05D005876 1.1e-14 82.8 66 80.3
Nitab4.5_0004323g0040 Nicotiana tabacum HOM05D001765 ORTHO05D005876 1.1e-14 82.8 66 80.3
Nitab4.5_0004323g0070 Nicotiana tabacum HOM05D001765 ORTHO05D005876 1.1e-14 82.8 66 80.3
Os11g0199600 Oryza sativa ssp. japonica HOM05D001765 ORTHO05D005876 1.4e-14 82.4 64 78.1
Solyc01g060030.3 Solanum lycopersicum HOM05D001765 ORTHO05D005876 1.4e-14 82.4 66 80.3
Sopen01g026230 Solanum pennellii HOM05D001765 ORTHO05D005876 1.4e-14 82.4 66 80.3
Zm00001eb109890 Zea mays HOM05D001765 ORTHO05D005876 1.4e-14 82.4 64 78.1
Zm00001eb328920 Zea mays HOM05D001765 ORTHO05D005876 1.4e-14 82.4 64 78.1
Oeu001465.1 Olea europaea HOM05D001765 ORTHO05D005876 2.4e-14 81.6 67 77.6
Oeu063485.1 Olea europaea HOM05D001765 ORTHO05D005876 2.4e-14 81.6 67 77.6
BcaB07g34154 Brassica carinata HOM05D001765 ORTHO05D005876 3.1e-14 81.3 65 76.9
Nitab4.5_0010629g0030 Nicotiana tabacum HOM05D001765 ORTHO05D005876 3.1e-14 81.3 66 78.8
ECA246G2338 Erigeron canadensis HOM05D001765 ORTHO05D005876 4.1e-14 80.9 66 78.8
HanXRQChr05g0145931 Helianthus annuus HOM05D001765 ORTHO05D005876 4.1e-14 80.9 66 78.8
Lsat_1_v5_gn_6_116901 Lactuca sativa HOM05D001765 ORTHO05D005876 4.1e-14 80.9 66 78.8
SGA_v2.0_scaffold119G32663 Striga asiatica HOM05D001765 ORTHO05D005876 4.1e-14 80.9 66 77.3
MSTRG.21776 Avicennia marina HOM05D001765 ORTHO05D005876 5.4e-14 80.5 67 76.1
CAN.G201.7 Capsicum annuum HOM05D001765 ORTHO05D005876 7.8e-13 76.6 67 74.6
CDE01G0626 Ceratophyllum demersum HOM05D001765 ORTHO05D005876 7.8e-13 76.6 65 72.3
Mapoly0171s0012 Marchantia polymorpha HOM05D001765 ORTHO05D005876 8.6e-12 73.2 66 68.2
Pp3c14_17690 Physcomitrium patens HOM05D001765 ORTHO05D005876 1.1e-11 72.8 63 69.8
Zm00001eb276930 Zea mays HOM05D001765 ORTHO05D005876 1.5e-11 72.4 64 70.3
Medtr1g032030 Medicago truncatula HOM05D001765 ORTHO05D005876 1.9e-11 72.0 52 84.6
Medtr1g032370 Medicago truncatula HOM05D001765 ORTHO05D005876 1.9e-11 72.0 52 84.6
Zm00001eb091100 Zea mays HOM05D001765 ORTHO05D005876 5.6e-11 70.5 64 68.8
HanXRQChr13g0395311 Helianthus annuus HOM05D001765 ORTHO05D005876 9.5e-11 69.7 54 75.9
CAN.G197.3 Capsicum annuum HOM05D001765 ORTHO05D005876 1.2e-10 69.3 65 66.2
Manes.15G005450 Manihot esculenta HOM05D001765 ORTHO05D005876 1.6e-10 68.9 44 88.6
Lsat_1_v5_gn_6_18261 Lactuca sativa HOM05D001765 ORTHO05D005876 2.8e-10 68.2 53 75.5
Zm00001eb408400 Zea mays HOM05D001765 ORTHO05D005876 6.1e-10 67.0 56 75.0
ECA233G0063 Erigeron canadensis HOM05D001765 ORTHO05D005876 5.2e-09 63.9 55 72.7
SEGI_08255 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 8.9e-09 63.2 66 65.2
SMO340G0272 Selaginella moellendorffii HOM05D001765 ORTHO05D005876 1.5e-08 62.4 40 87.5
CBR_g53494 Chara braunii HOM05D000188 ORTHO05D005876 4.4e-08 60.8 70 61.4
MBI19_g17409_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D005876 3.2e-06 54.7 68 60.3


User provided reference genes

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