Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1159G066 Amborella trichopoda HOM05D001765 ORTHO05D005876 2.1e-23 111.7 64 100.0
MBI19_g07244_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D005876 1.6e-18 95.5 64 89.1
TAR633G2429 Trochodendron aralioides HOM05D001765 ORTHO05D005876 1.6e-18 95.5 64 89.1
PSO210G5285 Papaver somniferum HOM05D001765 ORTHO05D005876 3.5e-18 94.4 64 87.5
PSO761G0153 Papaver somniferum HOM05D001765 ORTHO05D005876 3.5e-18 94.4 64 87.5
ATR0706G059 Amborella trichopoda HOM05D001765 ORTHO05D005876 5.9e-18 93.6 64 87.5
AUR62004747 Chenopodium quinoa HOM05D001765 ORTHO05D005876 5.9e-18 93.6 64 87.5
AUR62037504 Chenopodium quinoa HOM05D001765 ORTHO05D005876 5.9e-18 93.6 64 87.5
Ah.04g162900 Amaranthus hybridus HOM05D001765 ORTHO05D005876 1.3e-17 92.4 64 85.9
EL10Ac4g08905 Beta vulgaris HOM05D001765 ORTHO05D005876 1.3e-17 92.4 64 85.9
Nn3g21679 Nelumbo nucifera HOM05D001765 ORTHO05D005876 1.3e-17 92.4 64 85.9
Nn4g25612 Nelumbo nucifera HOM05D001765 ORTHO05D005876 1.7e-17 92.0 64 85.9
CiPaw.01G139800 Carya illinoinensis HOM05D001765 ORTHO05D005876 2.3e-17 91.7 64 84.4
Gohir.D10G178400 Gossypium hirsutum HOM05D001765 ORTHO05D005876 2.3e-17 91.7 64 84.4
Gorai.011G199400 Gossypium raimondii HOM05D001765 ORTHO05D005876 2.3e-17 91.7 64 84.4
Gohir.A10G171300 Gossypium hirsutum HOM05D001765 ORTHO05D005876 3.0e-17 91.3 64 84.4
Psat4g024600 Pisum sativum HOM05D001765 ORTHO05D005876 3.0e-17 91.3 64 84.4
SEGI_21194 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 3.0e-17 91.3 64 85.9
SEGI_31674 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 3.0e-17 91.3 64 85.9
TPR.G16856 Trifolium pratense HOM05D001765 ORTHO05D005876 3.0e-17 91.3 64 84.4
TAR365G0409 Trochodendron aralioides HOM05D001765 ORTHO05D005876 3.0e-17 91.3 64 84.4
GSVIVG01035017001 Vitis vinifera HOM05D001765 ORTHO05D005876 3.0e-17 91.3 64 84.4
ATR1159G071 Amborella trichopoda HOM05D001765 ORTHO05D005876 3.9e-17 90.9 63 84.1
Sed0022335 Sechium edule HOM05D001765 ORTHO05D005876 3.9e-17 90.9 64 82.8
CANSAT78G1829 Cannabis sativa HOM05D001765 ORTHO05D005876 5.0e-17 90.5 64 82.8
Sc13g0006420 Simmondsia chinensis HOM05D001765 ORTHO05D005876 5.0e-17 90.5 64 84.4
Aqoxy5G01535 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 6.6e-17 90.1 64 84.4
CiPaw.02G075900 Carya illinoinensis HOM05D001765 ORTHO05D005876 6.6e-17 90.1 64 82.8
ClCG06G004640 Citrullus lanatus HOM05D001765 ORTHO05D005876 6.6e-17 90.1 64 82.8
Haze_01276 Corylus avellana HOM05D001765 ORTHO05D005876 6.6e-17 90.1 64 82.8
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 6.6e-17 90.1 64 82.8
Lalb_Chr13g0298421 Lupinus albus HOM05D001765 ORTHO05D005876 6.6e-17 90.1 64 82.8
Prupe.1G073200 Prunus persica HOM05D001765 ORTHO05D005876 6.6e-17 90.1 64 82.8
Ca_21450_v3 Cicer arietinum L. HOM05D001765 ORTHO05D005876 8.6e-17 89.7 64 82.8
Duzib052G0074 Durio zibethinus HOM05D001765 ORTHO05D005876 8.6e-17 89.7 64 82.8
MD13G1156300 Malus domestica HOM05D001765 ORTHO05D005876 8.6e-17 89.7 64 82.8
arahy.Tifrunner.gnm1.ann1.03CYAA Arachis hypogaea HOM05D001765 ORTHO05D005876 1.5e-16 89.0 64 81.2
CDE12G0657 Ceratophyllum demersum HOM05D001765 ORTHO05D005876 1.5e-16 89.0 64 82.8
MD16G1157200 Malus domestica HOM05D001765 ORTHO05D005876 1.5e-16 89.0 64 81.2
QL06p011625 Quercus lobata HOM05D001765 ORTHO05D005876 1.5e-16 89.0 64 81.2
TWI73G0761 Tripterygium wilfordii HOM05D001765 ORTHO05D005876 1.5e-16 89.0 64 81.2
Aqoxy5G02976 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 1.9e-16 88.6 64 82.8
Cpa.g.sc9.87 Carica papaya HOM05D001765 ORTHO05D005876 1.9e-16 88.6 64 81.2
MELO3C023334.2 Cucumis melo HOM05D001765 ORTHO05D005876 1.9e-16 88.6 64 81.2
CsaV3_2G015100 Cucumis sativus L. HOM05D001765 ORTHO05D005876 1.9e-16 88.6 64 81.2
Glyma.07G241300 Glycine max HOM05D001765 ORTHO05D005876 1.9e-16 88.6 64 81.2
Glyma.17G032500 Glycine max HOM05D001765 ORTHO05D005876 1.9e-16 88.6 64 81.2
Lalb_Chr07g0182091 Lupinus albus HOM05D001765 ORTHO05D005876 1.9e-16 88.6 64 81.2
Manes.03G202700 Manihot esculenta HOM05D001765 ORTHO05D005876 1.9e-16 88.6 64 81.2
Phvul.003G112500 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 1.9e-16 88.6 64 81.2
Aqoxy1G02157 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 2.5e-16 88.2 64 82.8
Ciclev10005673m.g Citrus clementina HOM05D001765 ORTHO05D005876 2.5e-16 88.2 64 81.2
Gohir.A09G065500 Gossypium hirsutum HOM05D001765 ORTHO05D005876 2.5e-16 88.2 64 81.2
Gorai.006G079200 Gossypium raimondii HOM05D001765 ORTHO05D005876 2.5e-16 88.2 64 81.2
Prupe.1G122100 Prunus persica HOM05D001765 ORTHO05D005876 2.5e-16 88.2 64 81.2
THA.LOC104802705 Tarenaya hassleriana HOM05D001765 ORTHO05D005876 2.5e-16 88.2 64 81.2
Thecc.04G297600 Theobroma cacao HOM05D001765 ORTHO05D005876 2.5e-16 88.2 64 81.2
TWI09G0718 Tripterygium wilfordii HOM05D001765 ORTHO05D005876 2.5e-16 88.2 64 81.2
FvH4_4g19461 Fragaria vesca HOM05D001765 ORTHO05D005876 3.3e-16 87.8 64 81.2
PGR031G3587 Punica granatum HOM05D001765 ORTHO05D005876 3.3e-16 87.8 64 81.2
RcHm_v2.0_Chr4g0424571 Rosa chinensis HOM05D001765 ORTHO05D005876 3.3e-16 87.8 64 81.2
Sabra10G0110100 Salix brachista HOM05D001765 ORTHO05D005876 3.3e-16 87.8 64 79.7
THA.LOC104818892 Tarenaya hassleriana HOM05D001765 ORTHO05D005876 3.3e-16 87.8 64 81.2
Lj4g0023600 Lotus japonicus HOM05D001765 ORTHO05D005876 4.3e-16 87.4 64 79.7
Ciclev10016311m.g Citrus clementina HOM05D001765 ORTHO05D005876 5.6e-16 87.0 64 79.7
Duzib151G0385 Durio zibethinus HOM05D001765 ORTHO05D005876 5.6e-16 87.0 64 79.7
Potri.008G107100 Populus trichocarpa HOM05D001765 ORTHO05D005876 5.6e-16 87.0 64 79.7
Potri.010G142400 Populus trichocarpa HOM05D001765 ORTHO05D005876 5.6e-16 87.0 64 79.7
VMungo1215G2482 Vigna mungo HOM05D001765 ORTHO05D005876 5.6e-16 87.0 64 79.7
FAN07G0091 Fragaria x ananassa HOM05D001765 ORTHO05D005876 7.3e-16 86.7 64 79.7
Phvul.008G245800 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 7.3e-16 86.7 63 81.0
Phvul.009G074533 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 7.3e-16 86.7 63 81.0
Thhalv10004753m.g Eutrema salsugineum HOM05D001765 ORTHO05D005876 9.5e-16 86.3 64 79.7
Gohir.D09G064400 Gossypium hirsutum HOM05D001765 ORTHO05D005876 9.5e-16 86.3 64 79.7
Sabra08G0081000 Salix brachista HOM05D001765 ORTHO05D005876 9.5e-16 86.3 64 78.1
Sed0021764 Sechium edule HOM05D001765 ORTHO05D005876 9.5e-16 86.3 64 78.1
BcaC03g17719 Brassica carinata HOM05D001765 ORTHO05D005876 1.2e-15 85.9 64 79.7
C02p57300 Brassica napus HOM05D001765 ORTHO05D003527 1.2e-15 85.9 64 79.7
BolC2t11799H Brassica oleracea HOM05D001765 ORTHO05D003527 1.2e-15 85.9 64 79.7
BraA02t08788Z Brassica rapa HOM05D001765 ORTHO05D005876 1.2e-15 85.9 64 79.7
Sp2g19740 Schrenkiella parvula HOM05D001765 ORTHO05D005876 1.2e-15 85.9 64 79.7
SpUn0021_0110 Schrenkiella parvula HOM05D001765 ORTHO05D005876 1.2e-15 85.9 64 79.7
Atru.chr4.3029 Acer truncatum HOM05D001765 ORTHO05D005876 2.1e-15 85.1 64 78.1
vmacro08062 Vaccinium macrocarpon HOM05D001765 ORTHO05D005876 2.1e-15 85.1 63 82.5
VMungo0647G0513 Vigna mungo HOM05D000091 ORTHO05D005533 2.1e-15 85.1 63 79.4
A02p38130 Brassica napus HOM05D001765 ORTHO05D003527 2.8e-15 84.7 64 78.1
AL8G23110 Arabidopsis lyrata HOM05D001765 ORTHO05D005876 3.6e-15 84.3 64 76.6
BcaC06g30699 Brassica carinata HOM05D001765 ORTHO05D005876 3.6e-15 84.3 64 76.6
BcaNung02601 Brassica carinata HOM05D001765 ORTHO05D005876 3.6e-15 84.3 64 76.6
A06p38370 Brassica napus HOM05D001765 ORTHO05D005876 3.6e-15 84.3 64 76.6
C07p39890 Brassica napus HOM05D001765 ORTHO05D005876 3.6e-15 84.3 64 76.6
BolC7t44518H Brassica oleracea HOM05D001765 ORTHO05D005876 3.6e-15 84.3 64 76.6
BraA06t26751Z Brassica rapa HOM05D001765 ORTHO05D005876 3.6e-15 84.3 64 76.6
CARHR182130 Cardamine hirsuta HOM05D001765 ORTHO05D005876 4.7e-15 84.0 64 76.6
Aa31LG11G7990 Aethionema arabicum HOM05D001765 ORTHO05D005876 6.2e-15 83.6 64 76.6
AT5G49400 Arabidopsis thaliana HOM05D001765 ORTHO05D005876 6.2e-15 83.6 64 76.6
CSS0034555 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D005876 6.2e-15 83.6 64 82.8
Carub.0008s0928 Capsella rubella HOM05D001765 ORTHO05D005876 1.0e-14 82.8 64 76.6
COL.COLO4_11257 Corchorus olitorius HOM05D001765 ORTHO05D005876 1.0e-14 82.8 64 78.1
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 1.0e-14 82.8 64 76.6
Eucgr.A00351 Eucalyptus grandis HOM05D001765 ORTHO05D005876 1.0e-14 82.8 64 76.6
Actinidia40362 Actinidia chinensis HOM05D001765 ORTHO05D005876 1.8e-14 82.0 64 81.2
AagrBONN_evm.TU.Sc2ySwM_362.810 Anthoceros agrestis HOM05D001765 ORTHO05D005876 1.8e-14 82.0 66 78.8
CSS0002630 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D005876 1.8e-14 82.0 65 80.0
Hma1.2p1_0013F.1_g008730 Hydrangea macrophylla HOM05D001765 ORTHO05D005876 1.8e-14 82.0 64 81.2
Hma1.2p1_0078F.1_g040010 Hydrangea macrophylla HOM05D001765 ORTHO05D005876 1.8e-14 82.0 64 81.2
Dinv44303 Davidia involucrata HOM05D001765 ORTHO05D005876 2.3e-14 81.6 64 81.2
Mapoly0023s0038 Marchantia polymorpha HOM05D001765 ORTHO05D005876 2.3e-14 81.6 66 78.8
Nitab4.5_0010629g0030 Nicotiana tabacum HOM05D001765 ORTHO05D005876 2.3e-14 81.6 64 81.2
Lj6P689T37 Lonicera japonica HOM05D001765 ORTHO05D005876 3.1e-14 81.3 64 81.2
Pp3c14_13970 Physcomitrium patens HOM05D001765 ORTHO05D005876 3.1e-14 81.3 67 77.6
Rhsim04G0234200 Rhododendron simsii HOM05D001765 ORTHO05D005876 3.1e-14 81.3 64 81.2
Zm00001eb109890 Zea mays HOM05D001765 ORTHO05D005876 3.1e-14 81.3 62 79.0
Zm00001eb328920 Zea mays HOM05D001765 ORTHO05D005876 3.1e-14 81.3 62 79.0
AagrBONN_evm.TU.Sc2ySwM_228.5656 Anthoceros agrestis HOM05D001765 ORTHO05D005876 5.2e-14 80.5 66 77.3
DCAR_002506 Daucus carota HOM05D001765 ORTHO05D005876 8.9e-14 79.7 66 77.3
ECA246G2338 Erigeron canadensis HOM05D001765 ORTHO05D005876 1.2e-13 79.3 64 79.7
Migut.N00048 Erythranthe guttata HOM05D001765 ORTHO05D005876 1.2e-13 79.3 64 78.1
HanXRQChr05g0145931 Helianthus annuus HOM05D001765 ORTHO05D005876 1.2e-13 79.3 64 79.7
Peaxi162Scf00065g00002 Petunia axillaris HOM05D001765 ORTHO05D005876 1.2e-13 79.3 66 77.3
Cc03_g00980 Coffea canephora HOM05D001765 ORTHO05D005876 1.5e-13 79.0 62 77.4
unitig_749.g13366 Utricularia gibba HOM05D001765 ORTHO05D005876 2.0e-13 78.6 65 76.9
CAN.G874.72 Capsicum annuum HOM05D001765 ORTHO05D005876 2.6e-13 78.2 65 78.5
Lsat_1_v5_gn_6_116901 Lactuca sativa HOM05D001765 ORTHO05D005876 3.4e-13 77.8 64 78.1
Nitab4.5_0000276g0120 Nicotiana tabacum HOM05D001765 ORTHO05D005876 3.4e-13 77.8 64 78.1
Nitab4.5_0000456g0120 Nicotiana tabacum HOM05D001765 ORTHO05D005876 3.4e-13 77.8 64 78.1
Nitab4.5_0004323g0040 Nicotiana tabacum HOM05D001765 ORTHO05D005876 3.4e-13 77.8 64 78.1
Nitab4.5_0004323g0070 Nicotiana tabacum HOM05D001765 ORTHO05D005876 3.4e-13 77.8 64 78.1
Solyc01g060030.3 Solanum lycopersicum HOM05D001765 ORTHO05D005876 4.4e-13 77.4 64 78.1
Sopen01g026230 Solanum pennellii HOM05D001765 ORTHO05D005876 4.4e-13 77.4 64 78.1
Os11g0199600 Oryza sativa ssp. japonica HOM05D001765 ORTHO05D005876 5.8e-13 77.0 62 74.2
Oeu001465.1 Olea europaea HOM05D001765 ORTHO05D005876 7.5e-13 76.6 65 73.8
Oeu063485.1 Olea europaea HOM05D001765 ORTHO05D005876 7.5e-13 76.6 65 73.8
BcaB07g34154 Brassica carinata HOM05D001765 ORTHO05D005876 9.8e-13 76.3 63 74.6
MSTRG.21776 Avicennia marina HOM05D001765 ORTHO05D005876 1.3e-12 75.9 65 73.8
CAN.G201.7 Capsicum annuum HOM05D001765 ORTHO05D005876 1.3e-12 75.9 65 75.4
SGA_v2.0_scaffold119G32663 Striga asiatica HOM05D001765 ORTHO05D005876 2.2e-12 75.1 64 73.4
CDE01G0626 Ceratophyllum demersum HOM05D001765 ORTHO05D005876 6.4e-12 73.6 63 71.4
Zm00001eb091100 Zea mays HOM05D001765 ORTHO05D005876 6.4e-12 73.6 61 73.8
Mapoly0171s0012 Marchantia polymorpha HOM05D001765 ORTHO05D005876 1.9e-11 72.0 64 68.8
Zm00001eb276930 Zea mays HOM05D001765 ORTHO05D005876 1.9e-11 72.0 61 72.1
Pp3c14_17690 Physcomitrium patens HOM05D001765 ORTHO05D005876 7.0e-11 70.1 61 68.9
Lsat_1_v5_gn_6_18261 Lactuca sativa HOM05D001765 ORTHO05D005876 1.0e-09 66.2 50 74.0
Zm00001eb408400 Zea mays HOM05D001765 ORTHO05D005876 3.0e-09 64.7 54 74.1
HanXRQChr13g0395311 Helianthus annuus HOM05D001765 ORTHO05D005876 3.9e-09 64.3 51 70.6
CAN.G197.3 Capsicum annuum HOM05D001765 ORTHO05D005876 1.1e-08 62.8 63 61.9
ECA233G0063 Erigeron canadensis HOM05D001765 ORTHO05D005876 1.9e-08 62.0 52 71.2
Manes.15G005450 Manihot esculenta HOM05D001765 ORTHO05D005876 4.3e-08 60.8 41 82.9
Medtr1g032030 Medicago truncatula HOM05D001765 ORTHO05D005876 5.6e-08 60.5 49 75.5
Medtr1g032370 Medicago truncatula HOM05D001765 ORTHO05D005876 5.6e-08 60.5 49 75.5
CBR_g53494 Chara braunii HOM05D000188 ORTHO05D005876 2.1e-07 58.5 66 60.6
SEGI_08255 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 2.1e-07 58.5 63 63.5
SMO340G0272 Selaginella moellendorffii HOM05D001765 ORTHO05D005876 6.2e-07 57.0 38 81.6
MBI19_g17409_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D005876 1.8e-06 55.5 65 63.1


User provided reference genes

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