Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1158G010 Amborella trichopoda HOM05D007079 ORTHO05D009006 2.6e-222 775.0 381 100.0
MBI16_g23831_MAGBIO Magnolia biondii HOM05D007079 ORTHO05D009006 3.3e-100 369.4 319 59.9
Hma1.2p1_0469F.1_g158910 Hydrangea macrophylla HOM05D007079 ORTHO05D009006 1.8e-93 347.1 311 57.2
TWI56G1128 Tripterygium wilfordii HOM05D007079 ORTHO05D009006 2.2e-91 340.1 308 55.5
QL02p009607 Quercus lobata HOM05D007079 ORTHO05D009006 2.8e-91 339.7 309 55.3
Nn5g29708 Nelumbo nucifera HOM05D007079 ORTHO05D009006 1.4e-90 337.4 322 54.0
Cc07_g05190 Coffea canephora HOM05D007079 ORTHO05D009006 2.4e-90 336.7 313 56.2
PGSC0003DMG400010042 Solanum tuberosum HOM05D007079 ORTHO05D009006 4.1e-90 335.9 324 55.9
Solyc02g089890.4 Solanum lycopersicum HOM05D002466 ORTHO05D009006 7.0e-90 335.1 322 55.0
CAN.G836.5 Capsicum annuum HOM05D007079 ORTHO05D009006 9.1e-90 334.7 297 56.2
Aqoxy6G01196 Aquilegia oxysepala HOM05D007079 ORTHO05D009006 2.0e-89 333.6 297 56.6
Migut.K00854 Erythranthe guttata HOM05D007079 ORTHO05D009006 4.5e-89 332.4 319 56.1
Cfa013875 Carpinus fangiana HOM05D007079 ORTHO05D009006 5.9e-89 332.0 306 55.2
Atru.chr13.409 Acer truncatum HOM05D007079 ORTHO05D009006 1.7e-88 330.5 298 56.0
Sopen02g034590 Solanum pennellii HOM05D007079 ORTHO05D009006 1.7e-88 330.5 322 54.7
TAR376G0129 Trochodendron aralioides HOM05D007079 ORTHO05D009006 1.7e-88 330.5 296 57.1
GSVIVG01009772001 Vitis vinifera HOM05D007079 ORTHO05D009006 2.2e-88 330.1 304 54.6
CSS0042333 Camellia sinensis var. sinensis HOM05D007079 ORTHO05D009006 2.9e-88 329.7 311 53.7
Duzib093G0231 Durio zibethinus HOM05D007079 ORTHO05D009006 1.1e-87 327.8 300 54.7
CiPaw.07G156900 Carya illinoinensis HOM05D007079 ORTHO05D009006 1.5e-87 327.4 301 55.1
COL.COLO4_26243 Corchorus olitorius HOM05D007079 ORTHO05D009006 1.5e-87 327.4 311 53.1
Actinidia15361 Actinidia chinensis HOM05D007079 ORTHO05D009006 1.9e-87 327.0 312 54.2
Haze_22555 Corylus avellana HOM05D007079 ORTHO05D009006 1.9e-87 327.0 328 51.5
Thecc.08G033400 Theobroma cacao HOM05D007079 ORTHO05D009006 5.5e-87 325.5 295 54.6
AT1G19690 Arabidopsis thaliana HOM05D007079 ORTHO05D009006 9.4e-87 324.7 317 52.4
Lj4A133T11 Lonicera japonica HOM05D007079 ORTHO05D009006 9.4e-87 324.7 293 56.7
CsaV3_2G029020 Cucumis sativus L. HOM05D007079 ORTHO05D009006 2.1e-86 323.6 315 52.7
PSO541G3287 Papaver somniferum HOM05D007079 ORTHO05D009006 4.7e-86 322.4 301 54.5
MELO3C010968.2 Cucumis melo HOM05D007079 ORTHO05D009006 1.4e-85 320.9 315 52.4
Rhsim06G0028600 Rhododendron simsii HOM05D007079 ORTHO05D009006 6.8e-85 318.5 310 52.9
AL1G32410 Arabidopsis lyrata HOM05D007079 ORTHO05D009006 8.8e-85 318.2 315 53.3
ClCG08G014740 Citrullus lanatus HOM05D007079 ORTHO05D009006 2.6e-84 316.6 321 52.3
Ciclev10003294m.g Citrus clementina HOM05D007079 ORTHO05D009006 5.7e-84 315.5 305 53.8
PGR031G2472 Punica granatum HOM05D007079 ORTHO05D009006 5.7e-84 315.5 297 52.5
Carub.0001s1923 Capsella rubella HOM05D007079 ORTHO05D009006 7.5e-84 315.1 312 51.6
Sabra02G0025400 Salix brachista HOM05D007079 ORTHO05D009006 7.5e-84 315.1 318 51.6
PSO675G2324 Papaver somniferum HOM05D007079 ORTHO05D009006 1.7e-83 313.9 323 51.4
THA.LOC104813812 Tarenaya hassleriana HOM05D007079 ORTHO05D009006 2.2e-83 313.5 294 54.1
Glyma.17G253400 Glycine max HOM05D007079 ORTHO05D009006 2.8e-83 313.2 309 50.2
Hund26893 Selenicereus undatus HOM05D007079 ORTHO05D009006 3.7e-83 312.8 299 53.5
FvH4_2g39320 Fragaria vesca HOM05D007079 ORTHO05D009006 4.8e-83 312.4 295 52.2
BcaB07g31982 Brassica carinata HOM05D007079 ORTHO05D009006 1.8e-82 310.5 291 54.0
Oeu032890.1 Olea europaea HOM05D007079 ORTHO05D009006 1.8e-82 310.5 300 53.3
Potri.002G031500 Populus trichocarpa HOM05D007079 ORTHO05D009006 1.8e-82 310.5 340 48.8
Gorai.009G271700 Gossypium raimondii HOM05D007079 ORTHO05D009006 2.4e-82 310.1 315 49.8
A06p15810 Brassica napus HOM05D007079 ORTHO05D009006 5.4e-82 308.9 310 51.3
Sp1g17520 Schrenkiella parvula HOM05D007079 ORTHO05D009006 5.4e-82 308.9 291 54.0
MSTRG.15412 Avicennia marina HOM05D007079 ORTHO05D009006 7.0e-82 308.5 295 51.5
Prupe.1G374300 Prunus persica HOM05D007079 ORTHO05D009006 7.0e-82 308.5 296 54.4
AUR62014482 Chenopodium quinoa HOM05D007079 ORTHO05D009006 1.6e-81 307.4 302 52.3
Lsat_1_v5_gn_2_87400 Lactuca sativa HOM05D007079 ORTHO05D009006 1.6e-81 307.4 287 54.4
Sed0004812 Sechium edule HOM05D007079 ORTHO05D009006 1.6e-81 307.4 320 50.9
vmacro21681 Vaccinium macrocarpon HOM05D007079 ORTHO05D009006 1.6e-81 307.4 315 51.7
Phvul.001G011600 Phaseolus vulgaris HOM05D007079 ORTHO05D009006 3.5e-81 306.2 310 48.1
MD08G1024600 Malus domestica HOM05D007079 ORTHO05D009006 5.9e-81 305.4 297 52.9
RcHm_v2.0_Chr6g0301681 Rosa chinensis HOM05D007079 ORTHO05D009006 5.9e-81 305.4 328 49.1
Lalb_Chr22g0354571 Lupinus albus HOM05D007079 ORTHO05D009006 1.0e-80 304.7 304 50.0
BolC5t30520H Brassica oleracea HOM05D007079 ORTHO05D009006 1.3e-80 304.3 313 51.1
Thhalv10008056m.g Eutrema salsugineum HOM05D007079 ORTHO05D009006 5.0e-80 302.4 312 50.6
Peaxi162Scf00535g00126 Petunia axillaris HOM05D007079 ORTHO05D009006 5.0e-80 302.4 323 51.4
BraA06t24691Z Brassica rapa HOM05D007079 ORTHO05D009006 6.6e-80 302.0 314 51.0
Sc02g0005670 Simmondsia chinensis HOM05D007079 ORTHO05D009006 6.6e-80 302.0 315 49.5
VMungo0647G1101 Vigna mungo HOM05D007079 ORTHO05D009006 6.6e-80 302.0 322 47.2
C05p18130 Brassica napus HOM05D007079 ORTHO05D009006 8.6e-80 301.6 313 51.1
TPR.G30477 Trifolium pratense HOM05D007079 ORTHO05D009006 8.6e-80 301.6 324 50.0
Ca_13380_v3 Cicer arietinum L. HOM05D007079 ORTHO05D009006 1.1e-79 301.2 323 48.6
Lj5g0022889 Lotus japonicus HOM05D007079 ORTHO05D009006 1.1e-79 301.2 323 48.3
ECA238G0935 Erigeron canadensis HOM05D007079 ORTHO05D009006 1.9e-79 300.4 300 50.7
Ca_30048_v3 Cicer arietinum L. HOM05D007079 ORTHO05D009006 5.5e-79 298.9 297 50.8
Medtr1g022940 Medicago truncatula HOM05D007079 ORTHO05D009006 1.2e-78 297.7 313 49.5
Aa31LG7G4270 Aethionema arabicum HOM05D007079 ORTHO05D009006 2.8e-78 296.6 295 51.9
HanXRQChr09g0264171 Helianthus annuus HOM05D007079 ORTHO05D009006 2.8e-78 296.6 293 51.5
Zm00001eb128420 Zea mays HOM05D007079 ORTHO05D009006 4.7e-78 295.8 296 50.7
Manes.05G155100 Manihot esculenta HOM05D007079 ORTHO05D009006 1.2e-76 291.2 273 54.6
arahy.Tifrunner.gnm1.ann1.1TI5B0 Arachis hypogaea HOM05D007079 ORTHO05D009006 3.4e-76 289.7 296 50.3
CARHR020210 Cardamine hirsuta HOM05D007079 ORTHO05D009006 4.4e-76 289.3 270 53.7
SGA_v2.0_scaffold34G13653 Striga asiatica HOM05D007079 ORTHO05D009006 4.9e-75 285.8 299 50.5
Psat6g009680 Pisum sativum HOM05D007079 ORTHO05D009006 2.0e-73 280.4 365 44.4
Eucgr.F01861 Eucalyptus grandis HOM05D007079 ORTHO05D009006 2.7e-73 280.0 299 49.2
CDE05G2112 Ceratophyllum demersum HOM05D007079 ORTHO05D009006 4.5e-73 279.3 295 51.5
Glyma.14G071200 Glycine max HOM05D007079 ORTHO05D009006 1.0e-72 278.1 296 47.3
Ah.05g180850 Amaranthus hybridus HOM05D007079 ORTHO05D009006 1.3e-72 277.7 319 45.8
SalBow1G2109 Salvia bowleyana HOM05D007079 ORTHO05D009006 3.9e-72 276.2 257 52.1
CANSAT78G0946 Cannabis sativa HOM05D007079 ORTHO05D009006 2.5e-71 273.5 277 50.9
Nitab4.5_0002108g0010 Nicotiana tabacum HOM05D002466 ORTHO05D002668 3.3e-71 273.1 298 49.7
Gohir.A05G258332 Gossypium hirsutum HOM05D007079 ORTHO05D009006 2.1e-70 270.4 259 50.2
Gohir.D05G259900 Gossypium hirsutum HOM05D007079 ORTHO05D009006 2.1e-70 270.4 259 50.6
Dinv39455 Davidia involucrata HOM05D007079 ORTHO05D009006 3.1e-69 266.5 244 55.3
FAN27G2216 Fragaria x ananassa HOM05D007079 ORTHO05D009006 4.4e-68 262.7 294 47.3
Mapoly0043s0142 Marchantia polymorpha HOM05D007079 ORTHO05D009006 3.2e-66 256.5 307 44.3
Nitab4.5_0005754g0040 Nicotiana tabacum HOM05D007079 ORTHO05D009006 4.1e-66 256.1 299 47.8
Cpa.g.sc2827.1 Carica papaya HOM05D007079 ORTHO05D009006 5.4e-66 255.8 245 53.9
arahy.Tifrunner.gnm1.ann1.GTY6RX Arachis hypogaea HOM05D007079 ORTHO05D009006 6.0e-65 252.3 239 51.9
AagrBONN_evm.TU.Sc2ySwM_344.2117 Anthoceros agrestis HOM05D007079 ORTHO05D009006 1.0e-64 251.5 326 45.7
FAN26G1347 Fragaria x ananassa HOM05D007079 ORTHO05D009006 8.6e-64 248.4 231 52.8
FAN15G1571 Fragaria x ananassa HOM05D007079 ORTHO05D009006 2.5e-63 246.9 231 52.4
EL10Ac1g00614 Beta vulgaris HOM05D007079 ORTHO05D009006 2.6e-60 236.9 380 38.4
Hma1.2p1_0469F.1_g158920 Hydrangea macrophylla HOM05D007079 ORTHO05D009006 2.1e-57 227.3 189 60.8
Pp3c24_15610 Physcomitrium patens HOM05D007079 ORTHO05D009006 3.0e-56 223.4 298 43.6
SMO266G0019 Selaginella moellendorffii HOM05D007079 ORTHO05D009006 2.1e-54 217.2 294 42.9
arahy.Tifrunner.gnm1.ann1.6FY89R Arachis hypogaea HOM05D000259 ORTHO05D000155 5.8e-52 209.1 305 39.7
Cre14.g628500 Chlamydomonas reinhardtii HOM05D007079 ORTHO05D009006 5.1e-48 196.1 353 33.7
CBR_g1049 Chara braunii HOM05D007079 ORTHO05D009006 2.2e-43 180.6 387 31.8
DCAR_026263 Daucus carota HOM05D007079 ORTHO05D009006 2.2e-43 180.6 219 46.6
AUR62034519 Chenopodium quinoa HOM05D007079 ORTHO05D009006 4.2e-42 176.4 166 53.0
Cpa.g.sc140.8 Carica papaya HOM05D007079 ORTHO05D009006 1.1e-37 161.8 280 37.1
PRCOL_00000559 Prasinoderma coloniale HOM05D007079 ORTHO05D009006 2.1e-30 137.5 323 32.8
MCO16G171 Micromonas commoda HOM05D007079 ORTHO05D009006 3.5e-25 120.2 214 36.0
SEGI_24775 Sequoiadendron giganteum HOM05D007079 ORTHO05D009006 1.1e-23 115.2 108 52.8
SEGI_21203 Sequoiadendron giganteum HOM05D007079 ORTHO05D009006 1.5e-20 104.8 122 44.3
Os01g0261500 Oryza sativa ssp. japonica HOM05D007079 ORTHO05D009006 2.6e-20 104.0 107 48.6
Actinidia22515 Actinidia chinensis HOM05D007079 ORTHO05D009006 3.4e-20 103.6 166 37.3
FAN20G1265 Fragaria x ananassa HOM05D007079 ORTHO05D009006 1.1e-13 82.0 120 40.0
ATR0580G437 Amborella trichopoda HOM05D030519 ORTHO05D021219 5.3e-13 79.7 54 74.1
CSS0043977 Camellia sinensis var. sinensis HOM05D007079 ORTHO05D043334 9.3e-10 68.9 106 35.8


User provided reference genes

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