Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1156G038 Amborella trichopoda HOM05D003948 ORTHO05D004610 5.7e-178 627.5 317 100.0
TAR625G1371 Trochodendron aralioides HOM05D003948 ORTHO05D004610 3.9e-110 402.1 328 64.0
MBI04_g24205_MAGBIO Magnolia biondii HOM05D003948 ORTHO05D004610 2.1e-108 396.4 323 62.2
Dinv30573 Davidia involucrata HOM05D003948 ORTHO05D004610 2.4e-104 382.9 325 61.5
Nn8g39388 Nelumbo nucifera HOM05D003948 ORTHO05D004610 1.7e-102 376.7 326 60.1
Hma1.2p1_0317F.1_g123650 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 2.3e-102 376.3 328 61.6
Manes.11G053200 Manihot esculenta HOM05D003948 ORTHO05D004610 2.0e-98 363.2 322 58.1
CiPaw.01G244700 Carya illinoinensis HOM05D003948 ORTHO05D004610 1.3e-97 360.5 322 59.0
Actinidia01766 Actinidia chinensis HOM05D003948 ORTHO05D004610 8.4e-97 357.8 326 59.2
Dinv36546 Davidia involucrata HOM05D003948 ORTHO05D004610 8.4e-97 357.8 323 58.8
Actinidia15794 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.4e-96 357.1 320 59.7
Potri.003G061800 Populus trichocarpa HOM05D003948 ORTHO05D004610 1.4e-96 357.1 318 59.1
Gorai.011G081300 Gossypium raimondii HOM05D003948 ORTHO05D004610 5.4e-96 355.1 317 59.0
COL.COLO4_12905 Corchorus olitorius HOM05D003948 ORTHO05D004610 1.2e-95 354.0 317 60.3
Gohir.A10G076166 Gossypium hirsutum HOM05D003948 ORTHO05D004610 3.5e-95 352.4 317 59.0
Sabra03G0035900 Salix brachista HOM05D003948 ORTHO05D004610 1.0e-94 350.9 318 58.2
vmacro18966 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 1.3e-94 350.5 316 58.5
Cfa002007 Carpinus fangiana HOM05D003948 ORTHO05D004610 2.3e-94 349.7 328 58.2
CAN.G407.106 Capsicum annuum HOM05D003948 ORTHO05D004610 3.0e-94 349.4 328 56.7
Ciclev10026043m.g Citrus clementina HOM05D003948 ORTHO05D004610 3.9e-94 349.0 323 58.2
Haze_16515 Corylus avellana HOM05D003948 ORTHO05D004610 1.5e-93 347.1 322 58.4
Eucgr.J03052 Eucalyptus grandis HOM05D003948 ORTHO05D004610 2.5e-93 346.3 330 55.5
Nitab4.5_0002257g0010 Nicotiana tabacum HOM05D003948 ORTHO05D004610 3.3e-93 345.9 328 55.5
TWI34G1010 Tripterygium wilfordii HOM05D003948 ORTHO05D004610 5.6e-93 345.1 327 56.9
Nitab4.5_0006574g0020 Nicotiana tabacum HOM05D003948 ORTHO05D004610 7.3e-93 344.7 322 55.6
Cpa.g.sc10.224 Carica papaya HOM05D003948 ORTHO05D004610 2.8e-92 342.8 287 62.0
Sopen03g035350 Solanum pennellii HOM05D003948 ORTHO05D004610 2.8e-92 342.8 326 55.5
PGSC0003DMG402000630 Solanum tuberosum HOM05D003948 ORTHO05D004610 6.2e-92 341.7 326 55.2
MELO3C017899.2 Cucumis melo HOM05D003948 ORTHO05D004610 8.1e-92 341.3 323 56.3
Actinidia40456 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.8e-91 340.1 320 57.5
Peaxi162Scf00274g00859 Petunia axillaris HOM05D003948 ORTHO05D004610 1.8e-91 340.1 322 56.2
Rhsim08G0216000 Rhododendron simsii HOM05D003948 ORTHO05D004610 5.3e-91 338.6 317 56.5
ClCG07G012790 Citrullus lanatus HOM05D003948 ORTHO05D004610 6.9e-91 338.2 296 60.1
PGR031G2458 Punica granatum HOM05D003948 ORTHO05D004610 6.9e-91 338.2 322 56.2
CsaV3_4G001410 Cucumis sativus L. HOM05D003948 ORTHO05D004610 9.0e-91 337.8 323 55.7
GSVIVG01017270001 Vitis vinifera HOM05D003948 ORTHO05D004610 9.0e-91 337.8 253 66.4
Ciclev10008863m.g Citrus clementina HOM05D003948 ORTHO05D004610 1.2e-90 337.4 321 54.5
FAN14G0295 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.5e-90 337.0 318 57.9
Gohir.D05G126200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.5e-90 337.0 300 58.7
Gorai.009G130200 Gossypium raimondii HOM05D003948 ORTHO05D004610 2.0e-90 336.7 300 58.7
QL02p087786 Quercus lobata HOM05D003948 ORTHO05D004610 2.6e-90 336.3 315 56.8
Duzib168G1107 Durio zibethinus HOM05D003948 ORTHO05D004610 4.5e-90 335.5 321 54.2
RcHm_v2.0_Chr2g0136511 Rosa chinensis HOM05D003948 ORTHO05D004610 4.5e-90 335.5 316 56.3
Thecc.09G123100 Theobroma cacao HOM05D003948 ORTHO05D004610 5.8e-90 335.1 318 54.1
Medtr2g103300 Medicago truncatula HOM05D003948 ORTHO05D004610 7.6e-90 334.7 319 56.1
Prupe.7G239700 Prunus persica HOM05D003948 ORTHO05D004610 9.9e-90 334.3 323 54.2
Lalb_Chr22g0351001 Lupinus albus HOM05D003948 ORTHO05D004610 1.3e-89 334.0 335 54.9
Gohir.A05G125200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.7e-89 333.6 300 58.0
Solyc03g116460.4 Solanum lycopersicum HOM05D003948 ORTHO05D004610 1.7e-89 333.6 332 54.5
FAN02G3756 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.9e-89 332.8 319 57.1
COL.COLO4_05762 Corchorus olitorius HOM05D003948 ORTHO05D004610 3.8e-89 332.4 299 57.2
Atru.chr7.1198 Acer truncatum HOM05D003948 ORTHO05D004610 1.1e-88 330.9 324 53.7
FAN05G4627 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.1e-88 330.9 318 56.9
Sed0014623 Sechium edule HOM05D003948 ORTHO05D004610 1.1e-88 330.9 320 56.2
THA.LOC104813569 Tarenaya hassleriana HOM05D003948 ORTHO05D004610 1.1e-88 330.9 325 56.0
Actinidia22003 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.9e-88 330.1 323 56.0
TPR.G37189 Trifolium pratense HOM05D003948 ORTHO05D004610 3.2e-88 329.3 308 56.8
CSS0012666 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 4.2e-88 328.9 314 56.1
Gohir.A07G034800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 5.4e-88 328.6 324 52.8
CiPaw.03G241800 Carya illinoinensis HOM05D003948 ORTHO05D004610 1.2e-87 327.4 322 54.0
Gorai.001G040900 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.2e-87 327.4 324 52.2
MD17G1205900 Malus domestica HOM05D003948 ORTHO05D004610 2.7e-87 326.2 334 55.1
Duzib187G0771 Durio zibethinus HOM05D003948 ORTHO05D004610 4.6e-87 325.5 322 53.1
Gohir.D07G038800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 6.0e-87 325.1 324 52.2
Psat5g301000 Pisum sativum HOM05D003948 ORTHO05D004610 6.0e-87 325.1 284 58.5
Thhalv10008186m.g Eutrema salsugineum HOM05D003948 ORTHO05D004610 1.3e-86 323.9 292 56.2
Aqoxy7G02097 Aquilegia oxysepala HOM05D003948 ORTHO05D004610 1.8e-86 323.6 322 52.5
Cc04_g04060 Coffea canephora HOM05D003948 ORTHO05D004610 1.8e-86 323.6 329 55.0
Dinv41531 Davidia involucrata HOM05D003948 ORTHO05D004610 1.8e-86 323.6 253 64.0
Glyma.15G010100 Glycine max HOM05D003948 ORTHO05D004610 2.3e-86 323.2 330 53.9
Manes.14G130600 Manihot esculenta HOM05D003948 ORTHO05D004610 3.9e-86 322.4 315 51.1
VMungo1080G0933 Vigna mungo HOM05D003948 ORTHO05D004610 3.9e-86 322.4 323 54.8
AL1G27520 Arabidopsis lyrata HOM05D003948 ORTHO05D004610 8.7e-86 321.2 292 56.2
AUR62016374 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.5e-85 320.5 327 52.0
Sp1g13770 Schrenkiella parvula HOM05D003948 ORTHO05D004610 1.5e-85 320.5 292 55.8
AT1G15410 Arabidopsis thaliana HOM05D003948 ORTHO05D004610 1.9e-85 320.1 292 55.8
Lj3g0004615 Lotus japonicus HOM05D003948 ORTHO05D004610 2.5e-85 319.7 302 58.3
Glyma.13G363700 Glycine max HOM05D003948 ORTHO05D004610 4.3e-85 318.9 330 51.8
Rhsim01G0076600 Rhododendron simsii HOM05D003948 ORTHO05D004610 4.3e-85 318.9 315 54.9
Cpa.g.sc648.2 Carica papaya HOM05D003948 ORTHO05D004610 5.6e-85 318.5 291 56.7
CDE02G2452 Ceratophyllum demersum HOM05D003948 ORTHO05D004610 5.6e-85 318.5 311 53.1
Ca_01082_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 5.6e-85 318.5 313 55.0
EL10Ac9g21937 Beta vulgaris HOM05D003948 ORTHO05D004610 7.4e-85 318.2 336 51.2
A06p11460 Brassica napus HOM05D003948 ORTHO05D004610 7.4e-85 318.2 306 54.6
BolC5t30094H Brassica oleracea HOM05D003948 ORTHO05D004610 7.4e-85 318.2 304 55.3
BraA06t24323Z Brassica rapa HOM05D003948 ORTHO05D004610 7.4e-85 318.2 306 54.6
MD17G1205400 Malus domestica HOM05D003948 ORTHO05D004610 7.4e-85 318.2 326 53.4
Prupe.3G081000 Prunus persica HOM05D003948 ORTHO05D004610 7.4e-85 318.2 247 64.4
Gorai.009G019200 Gossypium raimondii HOM05D003948 ORTHO05D004610 9.6e-85 317.8 316 53.2
Lj3g0025185 Lotus japonicus HOM05D003948 ORTHO05D004610 1.3e-84 317.4 291 56.4
C05p13580 Brassica napus HOM05D003948 ORTHO05D004610 2.8e-84 316.2 306 54.6
AUR62011555 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.8e-84 316.2 327 51.4
Gohir.A05G017900 Gossypium hirsutum HOM05D003948 ORTHO05D004610 3.6e-84 315.8 316 52.5
Carub.0001s1520 Capsella rubella HOM05D003948 ORTHO05D004610 4.8e-84 315.5 293 55.6
BcaC05g25483 Brassica carinata HOM05D003948 ORTHO05D004610 6.2e-84 315.1 328 52.4
CANSAT56G2529 Cannabis sativa HOM05D003948 ORTHO05D004610 8.1e-84 314.7 320 54.1
Hund06577 Selenicereus undatus HOM05D003948 ORTHO05D004610 8.1e-84 314.7 332 49.4
Gohir.D05G018800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.8e-83 313.5 316 52.5
Hma1.2p1_0018F.1_g012640 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 4.0e-83 312.4 249 62.7
FvH4_1g03590 Fragaria vesca HOM05D003948 ORTHO05D004610 5.3e-83 312.0 330 50.9
CSS0016874 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 9.0e-83 311.2 320 53.4
PGR142G4293 Punica granatum HOM05D003948 ORTHO05D004610 1.2e-82 310.8 273 55.3
FAN19G2000 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.5e-82 310.5 330 50.6
FAN28G1194 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.5e-82 310.5 328 50.0
Ah.01g011210 Amaranthus hybridus HOM05D003948 ORTHO05D004610 2.0e-82 310.1 330 49.7
DCAR_025486 Daucus carota HOM05D003948 ORTHO05D004610 2.6e-82 309.7 296 54.7
RcHm_v2.0_Chr2g0089121 Rosa chinensis HOM05D003948 ORTHO05D004610 2.6e-82 309.7 328 48.8
FAN23G0975 Fragaria x ananassa HOM05D003948 ORTHO05D004610 3.4e-82 309.3 330 51.2
arahy.Tifrunner.gnm1.ann1.37ZKFY Arachis hypogaea HOM05D003948 ORTHO05D004610 4.5e-82 308.9 291 56.4
arahy.Tifrunner.gnm1.ann1.U8XBHX Arachis hypogaea HOM05D003948 ORTHO05D004610 4.5e-82 308.9 291 56.4
arahy.Tifrunner.gnm1.ann1.T1A9DJ Arachis hypogaea HOM05D003948 ORTHO05D004610 5.8e-82 308.5 319 50.8
Eucgr.C01133 Eucalyptus grandis HOM05D003948 ORTHO05D004610 2.9e-81 306.2 281 55.9
Rhsim01G0076700 Rhododendron simsii HOM05D003948 ORTHO05D004610 2.9e-81 306.2 318 53.5
arahy.Tifrunner.gnm1.ann1.VXE6AC Arachis hypogaea HOM05D003948 ORTHO05D004610 3.8e-81 305.8 319 50.5
Ah.09g225870 Amaranthus hybridus HOM05D003948 ORTHO05D004610 4.9e-81 305.4 313 50.5
Sed0015734 Sechium edule HOM05D003948 ORTHO05D004610 4.9e-81 305.4 285 53.0
ClCG06G010930 Citrullus lanatus HOM05D003948 ORTHO05D004610 1.9e-80 303.5 297 51.9
AUR62033477 Chenopodium quinoa HOM05D003948 ORTHO05D004610 5.5e-80 302.0 312 51.0
DCAR_014870 Daucus carota HOM05D003948 ORTHO05D004610 9.3e-80 301.2 312 50.3
Lsat_1_v5_gn_4_105880 Lactuca sativa HOM05D003948 ORTHO05D004610 1.2e-79 300.8 243 63.0
Glyma.05G008200 Glycine max HOM05D003948 ORTHO05D004610 1.6e-79 300.4 319 52.4
FAN26G0686 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.7e-79 299.7 337 48.7
Glyma.17G116500 Glycine max HOM05D003948 ORTHO05D004610 3.5e-79 299.3 317 50.8
MELO3C026644.2 Cucumis melo HOM05D003948 ORTHO05D004610 7.9e-79 298.1 293 52.2
Lj4g0000861 Lotus japonicus HOM05D003948 ORTHO05D004610 1.0e-78 297.7 318 49.4
EL10Ac8g18617 Beta vulgaris HOM05D003948 ORTHO05D004610 1.3e-78 297.4 329 47.7
VMungo1215G2012 Vigna mungo HOM05D003948 ORTHO05D004610 5.1e-78 295.4 321 50.2
Phvul.003G162800 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 6.7e-78 295.0 317 51.1
MSTRG.11117 Avicennia marina HOM05D003948 ORTHO05D004610 8.7e-78 294.7 318 51.3
Psat4g040400 Pisum sativum HOM05D003948 ORTHO05D004610 8.7e-78 294.7 318 48.1
TPR.G10716 Trifolium pratense HOM05D003948 ORTHO05D004610 1.1e-77 294.3 326 49.1
Ca_21696_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 1.5e-77 293.9 318 49.4
Hma1.2p1_0018F.1_g012660 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 3.3e-77 292.7 313 49.8
Medtr4g114000 Medicago truncatula HOM05D003948 ORTHO05D004610 7.4e-77 291.6 321 49.8
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.3e-76 290.8 282 52.5
CANSAT11G2309 Cannabis sativa HOM05D003948 ORTHO05D004610 1.6e-76 290.4 336 49.1
vmacro20597 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 2.1e-76 290.0 341 49.0
Haze_25613 Corylus avellana HOM05D003948 ORTHO05D004610 6.2e-76 288.5 318 49.7
Lj7A632T42 Lonicera japonica HOM05D003948 ORTHO05D004610 1.4e-75 287.3 277 53.8
SEGI_16675 Sequoiadendron giganteum HOM05D003948 ORTHO05D004610 4.5e-74 282.3 285 53.0
Cc06_g08780 Coffea canephora HOM05D003948 ORTHO05D004610 2.2e-73 280.0 303 50.5
Thecc.06G071300 Theobroma cacao HOM05D003948 ORTHO05D004610 2.2e-73 280.0 273 54.9
Sabra01G0139400 Salix brachista HOM05D003948 ORTHO05D004610 3.2e-72 276.2 349 48.1
Os01g0555200 Oryza sativa ssp. japonica HOM05D003948 ORTHO05D004610 2.1e-71 273.5 314 45.2
SalBow2G2418 Salvia bowleyana HOM05D003948 ORTHO05D004610 2.1e-71 273.5 252 54.4
Zm00001eb342320 Zea mays HOM05D003948 ORTHO05D004610 6.0e-71 271.9 277 48.4
Migut.D01056 Erythranthe guttata HOM05D003948 ORTHO05D004610 3.9e-70 269.2 320 48.8
SGA_v2.0_scaffold5G02657 Striga asiatica HOM05D003948 ORTHO05D004610 1.9e-69 266.9 305 48.2
PSO170G0552 Papaver somniferum HOM05D003948 ORTHO05D004610 1.2e-66 257.7 271 52.8
Duzib235G1097 Durio zibethinus HOM05D003948 ORTHO05D004610 1.1e-64 251.1 257 52.5
SalBow2G0819 Salvia bowleyana HOM05D003948 ORTHO05D004610 1.3e-62 244.2 248 51.2
GSVIVG01015502001 Vitis vinifera HOM05D003948 ORTHO05D004610 4.8e-60 235.7 157 69.4
Nn2g11965 Nelumbo nucifera HOM05D003948 ORTHO05D004610 8.2e-60 235.0 236 54.2
ECA232G2488 Erigeron canadensis HOM05D003948 ORTHO05D004610 3.1e-59 233.0 160 70.0
Mapoly0023s0100 Marchantia polymorpha HOM05D003948 ORTHO05D004610 6.5e-57 225.3 177 60.5
FvH4_6g30270 Fragaria vesca HOM05D003948 ORTHO05D004610 1.2e-50 204.5 227 52.0
Gohir.D10G075401 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.0e-49 201.4 149 66.4
Rhsim03G0104000 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.3e-49 201.1 150 64.7
MD02G1035500 Malus domestica HOM05D003948 ORTHO05D004610 4.2e-48 196.1 231 45.9
CARHR015960 Cardamine hirsuta HOM05D003948 ORTHO05D004610 3.9e-46 189.5 202 48.5
Dinv38099 Davidia involucrata HOM05D003948 ORTHO05D004610 6.7e-46 188.7 273 43.6
AUR62011108 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.4e-43 180.3 232 44.0
SMO271G0179 Selaginella moellendorffii HOM05D003948 ORTHO05D004610 7.0e-43 178.7 252 39.7
Atru.chr1.3072 Acer truncatum HOM05D003948 ORTHO05D004610 1.8e-38 164.1 223 45.3
Sc18g0000700 Simmondsia chinensis HOM05D003948 ORTHO05D004610 2.6e-37 160.2 223 43.0
Phvul.005G175301 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 2.0e-34 150.6 216 43.5
Lj5A69T36 Lonicera japonica HOM05D003948 ORTHO05D004610 1.6e-31 141.0 107 67.3
CARHR015950 Cardamine hirsuta HOM05D003948 ORTHO05D004610 5.2e-30 136.0 90 71.1
Lj1g0003343 Lotus japonicus HOM05D003948 ORTHO05D004610 3.7e-28 129.8 92 70.7
FAN26G3201 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.9e-25 120.2 80 66.2
Oeu041220.1 Olea europaea HOM05D003948 ORTHO05D004610 3.7e-20 103.2 77 61.0
Peaxi162Scf00274g00858 Petunia axillaris HOM05D003948 ORTHO05D004610 3.1e-19 100.1 77 64.9
DCAR_000573 Daucus carota HOM05D003948 ORTHO05D004610 1.3e-17 94.7 80 58.8
Psat0s806g0040 Pisum sativum HOM05D003948 ORTHO05D004610 8.6e-17 92.0 120 37.5
ClCG09G013940 Citrullus lanatus HOM05D003948 ORTHO05D004610 3.5e-10 70.1 56 58.9


User provided reference genes

Program Settings