Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1156G006 Amborella trichopoda HOM05D004174 ORTHO05D004624 8.4e-260 899.8 448 100.0
Nn8g39387 Nelumbo nucifera HOM05D004174 ORTHO05D004624 1.1e-153 547.4 457 63.2
Gohir.A13G199200 Gossypium hirsutum HOM05D004174 ORTHO05D004624 5.2e-153 545.0 427 66.7
Gohir.D13G204700 Gossypium hirsutum HOM05D004174 ORTHO05D004624 8.9e-153 544.3 448 65.2
COL.COLO4_05761 Corchorus olitorius HOM05D004174 ORTHO05D004624 1.3e-151 540.4 420 67.9
Thecc.09G123000 Theobroma cacao HOM05D004174 ORTHO05D004624 1.3e-151 540.4 453 65.3
Gorai.013G233600 Gossypium raimondii HOM05D004174 ORTHO05D004624 4.9e-151 538.5 448 65.0
Aqoxy7G02096 Aquilegia oxysepala HOM05D004174 ORTHO05D004624 6.4e-151 538.1 451 63.4
Duzib150G0384 Durio zibethinus HOM05D004174 ORTHO05D004624 6.4e-151 538.1 399 69.2
MBI04_g24208_MAGBIO Magnolia biondii HOM05D004174 ORTHO05D004624 6.4e-151 538.1 415 66.5
TWI34G0924 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 6.4e-151 538.1 420 66.7
TAR383G0558 Trochodendron aralioides HOM05D004174 ORTHO05D004624 1.1e-150 537.3 432 65.0
MD00G1107300 Malus domestica HOM05D004174 ORTHO05D004624 1.4e-150 537.0 417 67.1
vmacro06177 Vaccinium macrocarpon HOM05D004174 ORTHO05D004624 3.2e-150 535.8 419 67.3
Manes.14G130500 Manihot esculenta HOM05D004174 ORTHO05D004624 5.4e-150 535.0 447 64.0
Dinv36548 Davidia involucrata HOM05D004174 ORTHO05D004624 7.1e-150 534.6 419 67.8
Cc06_g08790 Coffea canephora HOM05D004174 ORTHO05D004624 1.6e-149 533.5 395 68.9
MD02G1035600 Malus domestica HOM05D004174 ORTHO05D004624 1.6e-149 533.5 421 66.7
Potri.018G070400 Populus trichocarpa HOM05D004174 ORTHO05D004624 2.1e-149 533.1 443 64.3
Manes.06G050000 Manihot esculenta HOM05D004174 ORTHO05D004624 6.0e-149 531.6 447 63.8
Atru.chr7.1197 Acer truncatum HOM05D004174 ORTHO05D004624 7.8e-149 531.2 423 66.4
TWI32G1270 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 1.0e-148 530.8 447 63.5
Eucgr.C04181 Eucalyptus grandis HOM05D004174 ORTHO05D004624 2.3e-148 529.6 419 67.5
Oeu058056.1 Olea europaea HOM05D004174 ORTHO05D004624 2.3e-148 529.6 413 67.6
Prupe.7G239600 Prunus persica HOM05D004174 ORTHO05D004624 3.0e-148 529.3 419 66.1
QL02p087765 Quercus lobata HOM05D004174 ORTHO05D004624 6.6e-148 528.1 418 65.6
MSTRG.19607 Avicennia marina HOM05D004174 ORTHO05D004624 1.1e-147 527.3 411 67.2
CiPaw.03G241700 Carya illinoinensis HOM05D004174 ORTHO05D004624 1.5e-147 526.9 454 61.7
RcHm_v2.0_Chr2g0089131 Rosa chinensis HOM05D004174 ORTHO05D004624 3.3e-147 525.8 394 67.8
Hma1.2p1_0665F.1_g199150 Hydrangea macrophylla HOM05D004174 ORTHO05D004624 5.6e-147 525.0 455 62.0
Hund09144 Selenicereus undatus HOM05D004174 ORTHO05D004624 3.6e-146 522.3 426 64.8
Peaxi162Scf02490g00007 Petunia axillaris HOM05D004174 ORTHO05D004624 4.7e-146 521.9 418 65.1
FAN23G0992 Fragaria x ananassa HOM05D004174 ORTHO05D004624 6.2e-146 521.5 394 67.3
PGSC0003DMG400024321 Solanum tuberosum HOM05D004174 ORTHO05D004624 1.1e-145 520.8 405 66.4
Ciclev10008313m.g Citrus clementina HOM05D004174 ORTHO05D004624 1.4e-145 520.4 432 63.7
Duzib187G0531 Durio zibethinus HOM05D004174 ORTHO05D004624 1.8e-145 520.0 437 64.3
Sopen06g031500 Solanum pennellii HOM05D004174 ORTHO05D004624 2.4e-145 519.6 414 65.5
FAN19G0954 Fragaria x ananassa HOM05D004174 ORTHO05D004624 4.0e-145 518.8 394 67.3
Aa31LG8G2170 Aethionema arabicum HOM05D004174 ORTHO05D004624 5.2e-145 518.5 422 62.6
Cfa003346 Carpinus fangiana HOM05D004174 ORTHO05D004624 6.8e-145 518.1 398 67.6
Haze_25614 Corylus avellana HOM05D004174 ORTHO05D004624 6.8e-145 518.1 398 67.6
FvH4_1g03600 Fragaria vesca HOM05D004174 ORTHO05D004624 8.9e-145 517.7 394 67.0
Thhalv10013566m.g Eutrema salsugineum HOM05D004174 ORTHO05D004624 2.0e-144 516.5 438 61.6
PGR102G0881 Punica granatum HOM05D004174 ORTHO05D004624 2.0e-144 516.5 444 61.7
Sabra18G0061500 Salix brachista HOM05D004174 ORTHO05D004624 2.0e-144 516.5 399 67.7
BcaB01g04811 Brassica carinata HOM05D004174 ORTHO05D004624 4.4e-144 515.4 451 59.4
CARHR192760 Cardamine hirsuta HOM05D004174 ORTHO05D004624 5.8e-144 515.0 445 60.2
CANSAT11G0280 Cannabis sativa HOM05D004174 ORTHO05D004624 7.6e-144 514.6 432 64.8
Carub.0006s1845 Capsella rubella HOM05D004174 ORTHO05D004624 7.6e-144 514.6 402 64.4
FAN28G1355 Fragaria x ananassa HOM05D004174 ORTHO05D004624 7.6e-144 514.6 423 63.6
BcaC03g13730 Brassica carinata HOM05D004174 ORTHO05D004624 2.2e-143 513.1 410 63.9
Sp6g24340 Schrenkiella parvula HOM05D004174 ORTHO05D004624 2.2e-143 513.1 396 64.4
Solyc06g075080.4 Solanum lycopersicum HOM05D004174 ORTHO05D004624 2.9e-143 512.7 403 66.5
Actinidia26403 Actinidia chinensis HOM05D004174 ORTHO05D004624 4.9e-143 511.9 396 66.2
Actinidia07434 Actinidia chinensis HOM05D004174 ORTHO05D004624 6.4e-143 511.5 438 62.6
ClCG11G002850 Citrullus lanatus HOM05D004174 ORTHO05D004624 8.4e-143 511.1 414 63.0
Nitab4.5_0006698g0010 Nicotiana tabacum HOM05D004174 ORTHO05D004624 1.4e-142 510.4 415 65.3
BolC3t13612H Brassica oleracea HOM05D004174 ORTHO05D004624 1.9e-142 510.0 434 60.4
SalBow3G2402 Salvia bowleyana HOM05D004174 ORTHO05D004624 3.2e-142 509.2 422 63.7
A02p06020 Brassica napus HOM05D004174 ORTHO05D004624 4.2e-142 508.8 410 63.4
C03p11380 Brassica napus HOM05D004174 ORTHO05D004624 4.2e-142 508.8 402 63.7
BraA02t05553Z Brassica rapa HOM05D004174 ORTHO05D004624 4.2e-142 508.8 410 63.4
FAN26G3217 Fragaria x ananassa HOM05D004174 ORTHO05D004624 4.2e-142 508.8 395 66.6
AT5G20070 Arabidopsis thaliana HOM05D004174 ORTHO05D004624 5.4e-142 508.4 431 60.6
BcaB05g22875 Brassica carinata HOM05D004174 ORTHO05D004624 5.4e-142 508.4 406 63.3
SGA_v2.0_scaffold229G43324 Striga asiatica HOM05D004174 ORTHO05D004624 5.4e-142 508.4 422 63.5
HanXRQChr12g0368841 Helianthus annuus HOM05D004174 ORTHO05D004624 7.1e-142 508.1 406 64.0
CAN.G1966.1 Capsicum annuum HOM05D004174 ORTHO05D004624 9.2e-142 507.7 419 64.4
Ca_03159_v3 Cicer arietinum L. HOM05D004174 ORTHO05D004624 9.2e-142 507.7 430 62.8
Medtr2g054680 Medicago truncatula HOM05D004174 ORTHO05D004624 9.2e-142 507.7 422 64.7
Potri.006G154200 Populus trichocarpa HOM05D004174 ORTHO05D004624 1.2e-141 507.3 398 65.1
AL6G31620 Arabidopsis lyrata HOM05D004174 ORTHO05D004624 2.7e-141 506.1 415 61.9
A03p09800 Brassica napus HOM05D004174 ORTHO05D004624 2.7e-141 506.1 439 59.9
BraA03t10295Z Brassica rapa HOM05D004174 ORTHO05D004624 2.7e-141 506.1 439 59.9
THA.LOC104811038 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 3.5e-141 505.8 425 60.9
Psat1g025760 Pisum sativum HOM05D004174 ORTHO05D004624 6.0e-141 505.0 415 64.6
Sed0019119 Sechium edule HOM05D004174 ORTHO05D004624 7.8e-141 504.6 413 63.0
CsaV3_2G002690 Cucumis sativus L. HOM05D004174 ORTHO05D004624 1.7e-140 503.4 415 61.9
COL.COLO4_17917 Corchorus olitorius HOM05D004174 ORTHO05D004624 3.0e-140 502.7 398 67.1
Lsat_1_v5_gn_8_58900 Lactuca sativa HOM05D004174 ORTHO05D004624 5.1e-140 501.9 409 63.3
THA.LOC104799651 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 5.1e-140 501.9 402 62.4
Nitab4.5_0000106g0230 Nicotiana tabacum HOM05D004174 ORTHO05D004624 8.7e-140 501.1 401 64.8
Rhsim03G0246500 Rhododendron simsii HOM05D004174 ORTHO05D004624 1.1e-139 500.7 361 70.9
PSO170G6838 Papaver somniferum HOM05D004174 ORTHO05D004624 1.9e-139 500.0 428 61.7
MELO3C004525.2 Cucumis melo HOM05D004174 ORTHO05D004624 3.3e-139 499.2 414 61.6
EL10Ac8g18616 Beta vulgaris HOM05D004174 ORTHO05D004624 4.3e-139 498.8 413 64.4
TPR.G31095 Trifolium pratense HOM05D004174 ORTHO05D004624 5.6e-139 498.4 399 66.7
Sc18g0000710 Simmondsia chinensis HOM05D004174 ORTHO05D004624 7.3e-139 498.0 411 64.0
Phvul.009G197200 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 9.6e-139 497.7 419 63.7
VMungo1309G2067 Vigna mungo HOM05D004174 ORTHO05D004624 9.6e-139 497.7 395 65.3
Lsat_1_v5_gn_7_42401 Lactuca sativa HOM05D004174 ORTHO05D004624 1.2e-138 497.3 399 63.4
HanXRQChr06g0180241 Helianthus annuus HOM05D004174 ORTHO05D004624 2.1e-138 496.5 402 64.4
BNapus_Darmor_BZH_scaffold_38p01820 Brassica napus HOM05D004174 ORTHO05D004624 2.8e-138 496.1 410 62.7
PSO455G0049 Papaver somniferum HOM05D004174 ORTHO05D004624 2.8e-138 496.1 415 63.4
Migut.J01169 Erythranthe guttata HOM05D004174 ORTHO05D004624 4.7e-138 495.4 398 62.8
DCAR_017828 Daucus carota HOM05D004174 ORTHO05D004624 8.1e-138 494.6 397 64.0
Lj1g0010752 Lotus japonicus HOM05D004174 ORTHO05D004624 1.4e-137 493.8 425 62.4
CSS0035220 Camellia sinensis var. sinensis HOM05D004174 ORTHO05D004624 1.2e-136 490.7 373 68.4
HPP92_000661 Vanilla planifolia HOM05D004174 ORTHO05D004624 1.5e-136 490.3 419 62.5
HPP92_000685 Vanilla planifolia HOM05D004174 ORTHO05D004624 2.0e-136 490.0 418 63.2
Lalb_Chr23g0275331 Lupinus albus HOM05D004174 ORTHO05D004624 4.4e-136 488.8 421 63.2
HanXRQChr03g0062501 Helianthus annuus HOM05D004174 ORTHO05D004624 9.9e-136 487.6 402 62.9
arahy.Tifrunner.gnm1.ann1.SBVG8E Arachis hypogaea HOM05D004174 ORTHO05D004624 2.9e-135 486.1 408 61.5
DCAR_009201 Daucus carota HOM05D004174 ORTHO05D004624 8.4e-135 484.6 408 62.3
arahy.Tifrunner.gnm1.ann1.E6UBTJ Arachis hypogaea HOM05D004174 ORTHO05D004624 9.3e-134 481.1 420 60.2
Glyma.06G216700 Glycine max HOM05D004174 ORTHO05D004624 6.0e-133 478.4 419 62.3
Gorai.004G277900 Gossypium raimondii HOM05D004174 ORTHO05D004624 6.0e-133 478.4 427 60.4
Gohir.D08G260000 Gossypium hirsutum HOM05D004174 ORTHO05D004624 7.8e-133 478.0 420 60.5
CDE02G3646 Ceratophyllum demersum HOM05D004174 ORTHO05D004624 1.9e-131 473.4 413 60.0
ECA240G3275 Erigeron canadensis HOM05D004174 ORTHO05D004624 8.1e-130 468.0 344 66.9
MD15G1175700 Malus domestica HOM05D004174 ORTHO05D004624 3.1e-129 466.1 468 57.3
SEGI_17043 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 4.0e-129 465.7 394 59.9
Zm00001eb377430 Zea mays HOM05D004174 ORTHO05D004624 5.3e-129 465.3 423 59.1
Lalb_Chr08g0234871 Lupinus albus HOM05D004174 ORTHO05D004624 2.2e-127 459.9 391 62.4
Os06g0141166 Oryza sativa ssp. japonica HOM05D004174 ORTHO05D004624 2.2e-127 459.9 425 58.1
GSVIVG01015501001 Vitis vinifera HOM05D004174 ORTHO05D004624 1.1e-126 457.6 305 73.8
TPR.G10694 Trifolium pratense HOM05D004174 ORTHO05D004624 1.9e-126 456.8 396 58.3
Sed0008859 Sechium edule HOM05D004174 ORTHO05D004624 1.6e-125 453.8 391 58.6
Psat4g040360 Pisum sativum HOM05D004174 ORTHO05D004624 2.1e-125 453.4 394 59.4
MELO3C026643.2 Cucumis melo HOM05D004174 ORTHO05D004624 3.5e-125 452.6 400 58.8
VMungo1215G2625 Vigna mungo HOM05D004174 ORTHO05D004624 3.5e-125 452.6 398 58.3
Phvul.003G162700 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 2.3e-124 449.9 398 58.0
Lalb_Chr07g0178801 Lupinus albus HOM05D004174 ORTHO05D004624 6.7e-124 448.4 394 58.6
Medtr4g113990 Medicago truncatula HOM05D004174 ORTHO05D004624 9.6e-123 444.5 397 57.7
Glyma.17G116600 Glycine max HOM05D004174 ORTHO05D004624 3.7e-122 442.6 407 57.7
AUR62033476 Chenopodium quinoa HOM05D004174 ORTHO05D004624 3.3e-115 419.5 411 56.2
Dinv41532 Davidia involucrata HOM05D004174 ORTHO05D004624 1.3e-114 417.5 358 61.7
FAN26G0665 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.8e-113 413.7 239 79.9
ClCG06G010920 Citrullus lanatus HOM05D004174 ORTHO05D004624 2.6e-104 383.3 397 51.1
Ah.02g124290 Amaranthus hybridus HOM05D004174 ORTHO05D004624 2.0e-99 367.1 251 68.5
Ah.14g080300 Amaranthus hybridus HOM05D004174 ORTHO05D004624 3.3e-99 366.3 222 73.9
AagrBONN_evm.TU.Sc2ySwM_368.699 Anthoceros agrestis HOM05D004174 ORTHO05D004624 1.3e-95 354.4 420 47.4
Pp3c3_2090 Physcomitrium patens HOM05D004174 ORTHO05D004624 2.9e-95 353.2 408 48.3
SEGI_09002 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 3.3e-91 339.7 272 59.6
Mapoly0103s0044 Marchantia polymorpha HOM05D004174 ORTHO05D004624 1.1e-89 334.7 384 47.9
Lj7A632G45 Lonicera japonica HOM05D004174 ORTHO05D004624 2.0e-88 330.5 293 60.4
SMO169G0291 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 5.9e-88 328.9 249 62.7
Gohir.A08G239300 Gossypium hirsutum HOM05D004174 ORTHO05D004624 1.1e-86 324.7 293 58.0
Lj4g0002160 Lotus japonicus HOM05D004174 ORTHO05D004624 1.6e-80 304.3 291 56.4
Lj4A460T58 Lonicera japonica HOM05D004174 ORTHO05D004624 4.7e-77 292.7 241 61.8
AUR62030487 Chenopodium quinoa HOM05D004174 ORTHO05D004624 6.3e-74 282.3 173 78.6
AUR62011109 Chenopodium quinoa HOM05D004174 ORTHO05D004624 4.0e-68 263.1 172 74.4
SEGI_03330 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 1.0e-63 248.4 310 44.8
Glyma.05G008302 Glycine max HOM05D004174 ORTHO05D004624 3.2e-57 226.9 152 71.1
BolC2t07007H Brassica oleracea HOM05D004174 ORTHO05D004624 8.9e-44 182.2 207 49.3
Cre09.g396900 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 8.9e-44 182.2 293 37.5
AUR62015314 Chenopodium quinoa HOM05D004174 ORTHO05D004624 1.9e-41 174.5 146 58.2
Cc11_g15180 Coffea canephora HOM05D004174 ORTHO05D004624 3.3e-38 163.7 96 82.3
Haze_27339 Corylus avellana HOM05D004174 ORTHO05D004624 1.9e-33 147.9 230 39.6
MD02G1035400 Malus domestica HOM05D004174 ORTHO05D004624 3.5e-32 143.7 82 72.0
SEGI_13131 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 1.1e-30 138.7 296 33.4
Cpa.g.sc648.3 Carica papaya HOM05D004174 ORTHO05D004624 9.6e-30 135.6 179 48.6
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 3.6e-29 133.7 210 45.2
Cfa023976 Carpinus fangiana HOM05D003934 ORTHO05D005108 2.4e-28 131.0 309 30.7
Pp3c14_12120 Physcomitrium patens HOM05D004174 ORTHO05D004624 8.9e-28 129.0 260 35.0
Lj4C460T3 Lonicera japonica HOM05D004174 ORTHO05D004624 2.4e-25 120.9 74 77.0
Ah.14g080310 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.2e-24 118.6 196 43.4
Mapoly0019s0154 Marchantia polymorpha HOM05D004174 ORTHO05D004624 1.3e-23 115.2 299 30.4
MCO10G159 Micromonas commoda HOM05D004174 ORTHO05D004624 8.7e-23 112.5 259 31.7
Ah.12g053390 Amaranthus hybridus HOM05D004174 ORTHO05D004624 2.8e-21 107.5 63 69.8
Ah.12g055680 Amaranthus hybridus HOM05D004174 ORTHO05D004624 6.2e-21 106.3 63 69.8
Ah.05g171270 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.4e-20 105.1 63 68.3
CBR_g46446 Chara braunii HOM05D004174 ORTHO05D004624 6.9e-20 102.8 122 44.3
Sabra06G0122300 Salix brachista HOM05D004174 ORTHO05D004624 9.0e-20 102.4 241 33.2
PRCOL_00006603 Prasinoderma coloniale HOM05D004174 ORTHO05D004624 5.8e-19 99.8 141 36.9
VMungo0647G2130 Vigna mungo HOM05D004174 ORTHO05D004624 7.1e-17 92.8 88 53.4
Cre13.g582476 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 1.0e-15 89.0 170 33.5
VMungo1215G0447 Vigna mungo HOM05D006361 ORTHO05D007824 4.0e-12 77.0 74 52.7
Ah.12g053410 Amaranthus hybridus HOM05D004174 ORTHO05D004624 3.2e-09 67.4 38 76.3
SMO141G0190 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 9.3e-09 65.9 119 37.0


User provided reference genes

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