Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1153G077 Amborella trichopoda HOM05D006826 ORTHO05D008404 4.2e-96 354.8 187 100.0
ATR1153G068 Amborella trichopoda HOM05D006826 ORTHO05D008404 1.1e-43 180.6 185 53.5
Cc07_g07060 Coffea canephora HOM05D006826 ORTHO05D008404 1.9e-16 90.1 135 39.3
CSS0017641 Camellia sinensis var. sinensis HOM05D006826 ORTHO05D008404 4.3e-16 89.0 192 36.5
MSTRG.3472 Avicennia marina HOM05D006826 ORTHO05D008404 5.6e-16 88.6 134 38.8
TAR381G0105 Trochodendron aralioides HOM05D006826 ORTHO05D008404 1.2e-15 87.4 138 42.0
PGSC0003DMG400021447 Solanum tuberosum HOM05D006826 ORTHO05D008404 8.1e-15 84.7 139 41.7
Nn1g04562 Nelumbo nucifera HOM05D006826 ORTHO05D008404 1.1e-14 84.3 158 39.2
Ah.02g125420 Amaranthus hybridus HOM05D006826 ORTHO05D008404 1.8e-14 83.6 141 39.0
Solyc02g092420.4 Solanum lycopersicum HOM05D006826 ORTHO05D008404 2.3e-14 83.2 143 39.9
AUR62004003 Chenopodium quinoa HOM05D006826 ORTHO05D008404 3.1e-14 82.8 128 40.6
EL10Ac6g15623 Beta vulgaris HOM05D006826 ORTHO05D008404 4.0e-14 82.4 149 37.6
Dinv26926 Davidia involucrata HOM05D006826 ORTHO05D008404 4.0e-14 82.4 223 33.2
Gohir.A12G076600 Gossypium hirsutum HOM05D006826 ORTHO05D008404 4.0e-14 82.4 144 33.3
SGA_v2.0_scaffold13G06413 Striga asiatica HOM05D006826 ORTHO05D008404 4.0e-14 82.4 191 35.1
Atru.chr4.1893 Acer truncatum HOM05D006826 ORTHO05D008404 6.8e-14 81.6 127 37.0
Sopen02g036970 Solanum pennellii HOM05D006826 ORTHO05D008404 6.8e-14 81.6 137 40.9
Thecc.01G072200 Theobroma cacao HOM05D006826 ORTHO05D008404 6.8e-14 81.6 202 31.2
AUR62040242 Chenopodium quinoa HOM05D006826 ORTHO05D008404 1.2e-13 80.9 128 39.1
Duzib147G0604 Durio zibethinus HOM05D006826 ORTHO05D008404 1.2e-13 80.9 139 35.3
Gorai.008G083000 Gossypium raimondii HOM05D006826 ORTHO05D008404 1.2e-13 80.9 144 33.3
Nitab4.5_0000651g0250 Nicotiana tabacum HOM05D006826 ORTHO05D008404 1.5e-13 80.5 141 41.1
unitig_32.g10777 Utricularia gibba HOM05D006826 ORTHO05D008404 1.5e-13 80.5 128 39.8
SalBow5G0080 Salvia bowleyana HOM05D006826 ORTHO05D008404 2.0e-13 80.1 167 36.5
SalBow5G4880 Salvia bowleyana HOM05D006826 ORTHO05D008404 2.0e-13 80.1 167 36.5
Aqoxy5G00873 Aquilegia oxysepala HOM05D006826 ORTHO05D008404 2.6e-13 79.7 164 34.1
Gohir.D12G074900 Gossypium hirsutum HOM05D006826 ORTHO05D008404 2.6e-13 79.7 144 32.6
GSVIVG01000112001 Vitis vinifera HOM05D006826 ORTHO05D008404 2.6e-13 79.7 188 33.0
DCAR_025798 Daucus carota HOM05D006826 ORTHO05D008404 3.4e-13 79.3 185 29.7
GSVIVG01000120001 Vitis vinifera HOM05D001721 ORTHO05D008404 4.4e-13 79.0 140 35.7
CAN.G1075.32 Capsicum annuum HOM05D006826 ORTHO05D008404 5.8e-13 78.6 148 38.5
Atru.chr3.138 Acer truncatum HOM05D006826 ORTHO05D008404 7.6e-13 78.2 126 36.5
Ah.03g140520 Amaranthus hybridus HOM05D006826 ORTHO05D008404 7.6e-13 78.2 172 34.3
unitig_748.g8387 Utricularia gibba HOM05D006826 ORTHO05D008404 7.6e-13 78.2 157 34.4
Actinidia32839 Actinidia chinensis HOM05D006826 ORTHO05D008404 1.7e-12 77.0 132 40.9
Migut.L00215 Erythranthe guttata HOM05D006826 ORTHO05D008404 1.7e-12 77.0 199 34.7
Lsat_1_v5_gn_4_161681 Lactuca sativa HOM05D006826 ORTHO05D008404 2.2e-12 76.6 141 37.6
arahy.Tifrunner.gnm1.ann1.HU6JVE Arachis hypogaea HOM05D006826 ORTHO05D008404 2.9e-12 76.3 195 29.7
arahy.Tifrunner.gnm1.ann1.I5GRN4 Arachis hypogaea HOM05D006826 ORTHO05D008404 3.7e-12 75.9 195 29.7
arahy.Tifrunner.gnm1.ann1.RKP7M8 Arachis hypogaea HOM05D006826 ORTHO05D008404 3.7e-12 75.9 195 29.7
TWI73G0815 Tripterygium wilfordii HOM05D006826 ORTHO05D008404 4.9e-12 75.5 124 38.7
RcHm_v2.0_Chr2g0107971 Rosa chinensis HOM05D006826 ORTHO05D008404 8.4e-12 74.7 132 37.1
Lalb_Chr16g0378851 Lupinus albus HOM05D006826 ORTHO05D008404 1.9e-11 73.6 183 30.6
FAN19G0226 Fragaria x ananassa HOM05D006826 ORTHO05D008404 3.2e-11 72.8 172 34.9
Hund13950 Selenicereus undatus HOM05D006826 ORTHO05D008404 3.2e-11 72.8 155 36.1
Glyma.01G193900 Glycine max HOM05D006826 ORTHO05D008404 4.1e-11 72.4 158 31.0
QL03p006766 Quercus lobata HOM05D006826 ORTHO05D008404 4.1e-11 72.4 133 36.1
CDE04G3189 Ceratophyllum demersum HOM05D006826 ORTHO05D008404 5.4e-11 72.0 136 39.0
Glyma.11G048000 Glycine max HOM05D006826 ORTHO05D008404 5.4e-11 72.0 162 31.5
Medtr5g015540 Medicago truncatula HOM05D006826 ORTHO05D008404 7.1e-11 71.6 164 31.1
vmacro18027 Vaccinium macrocarpon HOM05D006826 ORTHO05D008404 7.1e-11 71.6 111 40.5
BcaB05g23173 Brassica carinata HOM05D006826 ORTHO05D008404 9.2e-11 71.2 195 28.7
Carub.0005s1626 Capsella rubella HOM05D006826 ORTHO05D008404 9.2e-11 71.2 217 31.3
COL.COLO4_11571 Corchorus olitorius HOM05D006826 ORTHO05D008404 1.2e-10 70.9 126 34.9
FvH4_1g17650 Fragaria vesca HOM05D006826 ORTHO05D008404 1.2e-10 70.9 175 33.7
Peaxi162Scf00548g00661 Petunia axillaris HOM05D006826 ORTHO05D008404 1.2e-10 70.9 143 39.2
CARHR158980 Cardamine hirsuta HOM05D006826 ORTHO05D008404 1.6e-10 70.5 151 33.8
Ca_24696_v3 Cicer arietinum L. HOM05D006826 ORTHO05D008404 1.6e-10 70.5 148 31.8
HanXRQChr11g0323131 Helianthus annuus HOM05D006826 ORTHO05D008404 1.6e-10 70.5 141 34.8
AL5G29910 Arabidopsis lyrata HOM05D006826 ORTHO05D008404 2.1e-10 70.1 159 32.7
Cfa004128 Carpinus fangiana HOM05D001721 ORTHO05D008404 2.1e-10 70.1 130 36.2
CDE02G4649 Ceratophyllum demersum HOM05D006273 ORTHO05D007607 2.1e-10 70.1 131 38.9
FAN26G1977 Fragaria x ananassa HOM05D006826 ORTHO05D008404 2.1e-10 70.1 173 32.4
ClCG01G017570 Citrullus lanatus HOM05D006826 ORTHO05D008404 2.7e-10 69.7 139 34.5
Lj2g0002010 Lotus japonicus HOM05D006826 ORTHO05D008404 2.7e-10 69.7 207 31.4
Oeu013318.1 Olea europaea HOM05D006826 ORTHO05D000116 3.5e-10 69.3 135 32.6
Potri.005G149400 Populus trichocarpa HOM05D006826 ORTHO05D008404 3.5e-10 69.3 149 32.2
BolC8t50111H Brassica oleracea HOM05D006826 ORTHO05D008404 4.6e-10 68.9 200 30.0
ECA232G1496 Erigeron canadensis HOM05D000109 ORTHO05D000210 4.6e-10 68.9 185 31.4
FAN23G1142 Fragaria x ananassa HOM05D006826 ORTHO05D008404 4.6e-10 68.9 173 32.4
FAN23G2863 Fragaria x ananassa HOM05D006826 ORTHO05D008404 4.6e-10 68.9 173 32.4
FAN28G2373 Fragaria x ananassa HOM05D006826 ORTHO05D008404 4.6e-10 68.9 173 32.4
Ciclev10025483m.g Citrus clementina HOM05D006826 ORTHO05D008404 6.0e-10 68.6 124 33.9
Manes.13G112000 Manihot esculenta HOM05D006826 ORTHO05D008404 6.0e-10 68.6 151 33.8
Psat2g171440 Pisum sativum HOM05D006826 ORTHO05D008404 6.0e-10 68.6 159 30.8
TPR.G34852 Trifolium pratense HOM05D006826 ORTHO05D008404 6.0e-10 68.6 162 30.9
AT3G49900 Arabidopsis thaliana HOM05D006826 ORTHO05D008404 7.8e-10 68.2 160 32.5
A09p43040 Brassica napus HOM05D006826 ORTHO05D008404 7.8e-10 68.2 212 29.2
BraA09t39773Z Brassica rapa HOM05D006826 ORTHO05D008404 7.8e-10 68.2 206 29.6
BcaC07g39455 Brassica carinata HOM05D006826 ORTHO05D008404 1.0e-09 67.8 165 32.1
C08p24930 Brassica napus HOM05D006826 ORTHO05D008404 1.0e-09 67.8 165 32.1
Duzib264G1056 Durio zibethinus HOM05D006826 ORTHO05D008404 1.0e-09 67.8 183 32.2
BcaC09g49982 Brassica carinata HOM05D006826 ORTHO05D008404 1.3e-09 67.4 146 33.6
C01p30410 Brassica napus HOM05D006826 ORTHO05D008404 1.3e-09 67.4 146 33.6
BolC1t02984H Brassica oleracea HOM05D006826 ORTHO05D008404 1.3e-09 67.4 146 33.6
Cpa.g.sc6.22 Carica papaya HOM05D006826 ORTHO05D008404 1.3e-09 67.4 126 34.9
Haze_15287 Corylus avellana HOM05D006826 ORTHO05D008404 1.3e-09 67.4 134 32.8
THA.LOC104821220 Tarenaya hassleriana HOM05D006826 ORTHO05D008404 1.3e-09 67.4 171 33.9
VMungo0251G1929 Vigna mungo HOM05D006826 ORTHO05D008404 1.3e-09 67.4 150 31.3
CsaV3_6G044110 Cucumis sativus L. HOM05D006826 ORTHO05D008404 1.7e-09 67.0 171 31.6
PSO170G4592 Papaver somniferum HOM05D006826 ORTHO05D008404 1.7e-09 67.0 134 34.3
Phvul.003G235400 Phaseolus vulgaris HOM05D006826 ORTHO05D008404 1.7e-09 67.0 150 30.7
Eucgr.I00707 Eucalyptus grandis HOM05D006826 ORTHO05D008404 3.0e-09 66.2 157 30.6
Glyma.17G161200 Glycine max HOM05D006826 ORTHO05D008404 3.0e-09 66.2 158 29.7
Prupe.6G221500 Prunus persica HOM05D006826 ORTHO05D008404 3.9e-09 65.9 183 31.7
PSO017G0034 Papaver somniferum HOM05D006826 ORTHO05D008404 5.1e-09 65.5 133 33.8
Aa31LG4G18350 Aethionema arabicum HOM05D006826 ORTHO05D008404 6.6e-09 65.1 149 32.2
BcaB01g00654 Brassica carinata HOM05D006826 ORTHO05D008404 8.6e-09 64.7 199 29.1
Nitab4.5_0008034g0010 Nicotiana tabacum HOM05D006826 ORTHO05D008404 8.6e-09 64.7 130 34.6
CANSAT01G2774 Cannabis sativa HOM05D006826 ORTHO05D008404 1.1e-08 64.3 123 35.0
Thhalv10010291m.g Eutrema salsugineum HOM05D006826 ORTHO05D008404 1.1e-08 64.3 142 33.1
Sed0012414 Sechium edule HOM05D006826 ORTHO05D008404 2.5e-08 63.2 139 35.3
MD02G1185300 Malus domestica HOM05D006826 ORTHO05D008404 3.3e-08 62.8 140 29.3
A01p24390 Brassica napus HOM05D006826 ORTHO05D008404 4.3e-08 62.4 172 31.4
Sp5g12210 Schrenkiella parvula HOM05D006826 ORTHO05D008404 5.6e-08 62.0 207 29.0
CiPaw.01G004900 Carya illinoinensis HOM05D006826 ORTHO05D008404 9.6e-08 61.2 117 35.9
PGR004G0197 Punica granatum HOM05D006826 ORTHO05D008404 9.6e-08 61.2 133 33.1
Pp3c6_24130 Physcomitrium patens HOM05D000091 ORTHO05D004126 1.2e-07 60.8 118 32.2
Pp3c7_4380 Physcomitrium patens HOM05D000091 ORTHO05D004032 1.2e-07 60.8 75 42.7
VMungo1215G2007 Vigna mungo HOM05D001721 ORTHO05D008404 1.6e-07 60.5 169 28.4
BraA01t02352Z Brassica rapa HOM05D006826 ORTHO05D008404 2.1e-07 60.1 139 31.7
Pp3c12_21590 Physcomitrium patens HOM05D000091 ORTHO05D002116 2.8e-07 59.7 152 28.9
unitig_26.g8850 Utricularia gibba HOM05D003833 ORTHO05D004209 3.6e-07 59.3 116 31.0
arahy.Tifrunner.gnm1.ann1.99W7VW Arachis hypogaea HOM05D000091 ORTHO05D001510 4.7e-07 58.9 179 29.1
Phvul.002G011000 Phaseolus vulgaris HOM05D006826 ORTHO05D008404 4.7e-07 58.9 147 27.2
SEGI_39225 Sequoiadendron giganteum HOM05D000091 ORTHO05D009457 4.7e-07 58.9 162 31.5
arahy.Tifrunner.gnm1.ann1.3RU1TJ Arachis hypogaea HOM05D000091 ORTHO05D001510 6.2e-07 58.5 179 29.1
CDE05G3004 Ceratophyllum demersum HOM05D000091 ORTHO05D001510 6.2e-07 58.5 123 34.1
Mapoly0182s0022 Marchantia polymorpha HOM05D000091 ORTHO05D004126 6.2e-07 58.5 57 52.6
Rhsim08G0093800 Rhododendron simsii HOM05D006826 ORTHO05D008404 6.2e-07 58.5 108 36.1
RcHm_v2.0_Chr6g0271301 Rosa chinensis HOM05D000091 ORTHO05D004126 1.1e-06 57.8 121 29.8
Cc02_g21030 Coffea canephora HOM05D000091 ORTHO05D004126 1.4e-06 57.4 121 29.8
Haze_24930 Corylus avellana HOM05D000091 ORTHO05D009480 1.4e-06 57.4 159 26.4
HPP92_018819 Vanilla planifolia HOM05D000091 ORTHO05D006279 1.4e-06 57.4 119 33.6
Lj4g0014549 Lotus japonicus HOM05D000091 ORTHO05D004126 1.8e-06 57.0 121 30.6
Mapoly0026s0028 Marchantia polymorpha HOM05D000091 ORTHO05D009457 1.8e-06 57.0 159 30.2
Phvul.002G211400 Phaseolus vulgaris HOM05D000091 ORTHO05D004126 1.8e-06 57.0 123 29.3
Pp3c15_21210 Physcomitrium patens HOM05D000091 ORTHO05D004126 1.8e-06 57.0 112 35.7
Migut.N01090 Erythranthe guttata HOM05D000091 ORTHO05D004126 3.1e-06 56.2 123 31.7
HanXRQChr15g0469851 Helianthus annuus HOM05D000091 ORTHO05D009480 3.1e-06 56.2 113 27.4
AT3G50840 Arabidopsis thaliana HOM05D000091 ORTHO05D006279 4.0e-06 55.8 116 29.3
CSS0047297 Camellia sinensis var. sinensis HOM05D000091 ORTHO05D004126 4.0e-06 55.8 127 29.9
Cfa002661 Carpinus fangiana HOM05D000091 ORTHO05D009480 4.0e-06 55.8 138 25.4
Eucgr.G00960 Eucalyptus grandis HOM05D000091 ORTHO05D004126 4.0e-06 55.8 122 29.5
Gohir.D02G199600 Gossypium hirsutum HOM05D000091 ORTHO05D004126 4.0e-06 55.8 133 29.3
Gorai.005G224200 Gossypium raimondii HOM05D000091 ORTHO05D004126 4.0e-06 55.8 133 29.3
Solyc10g047530.2 Solanum lycopersicum HOM05D000091 ORTHO05D004126 4.0e-06 55.8 123 26.8
Sopen10g017810 Solanum pennellii HOM05D000091 ORTHO05D004126 4.0e-06 55.8 123 26.8
VMungo0251G1806 Vigna mungo HOM05D000091 ORTHO05D004126 4.0e-06 55.8 129 27.9
Atru.chr8.1862 Acer truncatum HOM05D000091 ORTHO05D001510 5.2e-06 55.5 115 33.0
CDE02G4405 Ceratophyllum demersum HOM05D000091 ORTHO05D001510 5.2e-06 55.5 123 32.5
Gohir.A03G175800 Gossypium hirsutum HOM05D000091 ORTHO05D004126 5.2e-06 55.5 133 29.3
Psat7g100600 Pisum sativum HOM05D000091 ORTHO05D004126 5.2e-06 55.5 57 49.1
MSTRG.16608 Avicennia marina HOM05D000091 ORTHO05D004126 6.8e-06 55.1 121 30.6
Duzib132G1054 Durio zibethinus HOM05D000091 ORTHO05D004126 6.8e-06 55.1 139 24.5
Lj2C16T1 Lonicera japonica HOM05D000091 ORTHO05D001510 6.8e-06 55.1 114 30.7
Manes.10G102200 Manihot esculenta HOM05D000091 ORTHO05D004126 6.8e-06 55.1 123 26.0
Phvul.006G203600 Phaseolus vulgaris HOM05D000091 ORTHO05D004126 6.8e-06 55.1 168 23.8
Solyc01g105680.4 Solanum lycopersicum HOM05D000091 ORTHO05D004126 6.8e-06 55.1 140 25.7
THA.LOC104799720 Tarenaya hassleriana HOM05D000091 ORTHO05D001510 6.8e-06 55.1 127 29.9
BcaB04g19967 Brassica carinata HOM05D000091 ORTHO05D004126 8.9e-06 54.7 133 32.3
ClCG10G009530 Citrullus lanatus HOM05D000091 ORTHO05D004126 8.9e-06 54.7 186 26.9
Ciclev10031240m.g Citrus clementina HOM05D000091 ORTHO05D001510 8.9e-06 54.7 115 29.6
Ciclev10033437m.g Citrus clementina HOM05D000091 ORTHO05D008759 8.9e-06 54.7 113 34.5
Migut.H02359 Erythranthe guttata HOM05D000091 ORTHO05D009480 8.9e-06 54.7 106 29.2
Lsat_1_v5_gn_7_31160 Lactuca sativa HOM05D000091 ORTHO05D001510 8.9e-06 54.7 123 30.9
Nitab4.5_0002650g0080 Nicotiana tabacum HOM05D000091 ORTHO05D004126 8.9e-06 54.7 139 25.2
Peaxi162Scf00299g00849 Petunia axillaris HOM05D000091 ORTHO05D004126 8.9e-06 54.7 111 32.4
Pp3c27_6760 Physcomitrium patens HOM05D000091 ORTHO05D004126 8.9e-06 54.7 57 43.9
Pp3c6_12160 Physcomitrium patens HOM05D000091 ORTHO05D004126 8.9e-06 54.7 114 32.5
SEGI_37835 Sequoiadendron giganteum HOM05D000091 ORTHO05D003024 8.9e-06 54.7 115 27.8
Zm00001eb244600 Zea mays HOM05D000091 ORTHO05D004126 8.9e-06 54.7 176 31.8


User provided reference genes

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