Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1153G072 Amborella trichopoda HOM05D005802 ORTHO05D006992 3.6e-149 531.6 273 100.0
TAR375G0577 Trochodendron aralioides HOM05D005802 ORTHO05D006992 1.0e-87 327.4 266 65.4
Nn6g34003 Nelumbo nucifera HOM05D005802 ORTHO05D006992 1.4e-87 327.0 267 64.4
Duzib133G1160 Durio zibethinus HOM05D005802 ORTHO05D006992 5.2e-87 325.1 270 64.1
PSO017G7043 Papaver somniferum HOM05D005802 ORTHO05D006992 2.0e-86 323.2 269 62.8
PSO478G1061 Papaver somniferum HOM05D005802 ORTHO05D006992 4.4e-86 322.0 269 62.5
Potri.014G060000 Populus trichocarpa HOM05D005802 ORTHO05D006992 6.3e-85 318.2 268 63.4
Thecc.01G381900 Theobroma cacao HOM05D005802 ORTHO05D006992 2.7e-83 312.8 271 63.8
COL.COLO4_12497 Corchorus olitorius HOM05D005802 ORTHO05D006992 3.5e-83 312.4 273 64.1
QL04p039160 Quercus lobata HOM05D005802 ORTHO05D006992 3.5e-83 312.4 265 62.3
CSS0000774 Camellia sinensis var. sinensis HOM05D005802 ORTHO05D006992 5.9e-83 311.6 269 63.6
Gohir.D12G097200 Gossypium hirsutum HOM05D005802 ORTHO05D006992 7.7e-83 311.2 266 63.9
Gohir.A12G094400 Gossypium hirsutum HOM05D005802 ORTHO05D006992 1.3e-82 310.5 266 63.5
Actinidia12678 Actinidia chinensis HOM05D005802 ORTHO05D006992 1.7e-82 310.1 264 62.9
GSVIVG01027639001 Vitis vinifera HOM05D005802 ORTHO05D006992 5.0e-82 308.5 267 60.7
PGR042G3152 Punica granatum HOM05D005802 ORTHO05D006992 6.6e-82 308.1 266 61.7
CiPaw.13G033000 Carya illinoinensis HOM05D005802 ORTHO05D006992 1.9e-81 306.6 266 61.7
Manes.05G048500 Manihot esculenta HOM05D005802 ORTHO05D006992 3.3e-81 305.8 267 62.2
arahy.Tifrunner.gnm1.ann1.I9SF1K Arachis hypogaea HOM05D005802 ORTHO05D006992 7.2e-81 304.7 274 58.4
Gorai.008G105800 Gossypium raimondii HOM05D005802 ORTHO05D006992 7.2e-81 304.7 266 63.2
Lj3g0015572 Lotus japonicus HOM05D005802 ORTHO05D006992 9.5e-81 304.3 267 60.7
Rhsim01G0150000 Rhododendron simsii HOM05D005802 ORTHO05D006992 9.5e-81 304.3 267 61.0
Sabra14G0043900 Salix brachista HOM05D005802 ORTHO05D006992 2.8e-80 302.8 278 60.4
Aqoxy7G00743 Aquilegia oxysepala HOM05D005802 ORTHO05D006992 3.6e-80 302.4 273 58.2
Haze_02673 Corylus avellana HOM05D005802 ORTHO05D006992 4.7e-80 302.0 271 60.1
Eucgr.D02489 Eucalyptus grandis HOM05D005802 ORTHO05D006992 6.1e-80 301.6 264 59.8
DCAR_025098 Daucus carota HOM05D005802 ORTHO05D006992 1.4e-79 300.4 262 60.7
Atru.chr5.259 Acer truncatum HOM05D005802 ORTHO05D006992 1.8e-79 300.1 267 61.8
Ciclev10021687m.g Citrus clementina HOM05D005802 ORTHO05D006992 1.8e-79 300.1 266 62.0
AL5G42970 Arabidopsis lyrata HOM05D005802 ORTHO05D006992 2.3e-79 299.7 266 63.2
Cpa.g.sc49.162 Carica papaya HOM05D005802 ORTHO05D006992 2.3e-79 299.7 271 60.9
Medtr4g026180 Medicago truncatula HOM05D005802 ORTHO05D006992 2.3e-79 299.7 270 56.3
Cfa011175 Carpinus fangiana HOM05D005802 ORTHO05D006992 1.2e-78 297.4 256 60.5
Lsat_1_v5_gn_4_44621 Lactuca sativa HOM05D005802 ORTHO05D006992 1.2e-78 297.4 274 58.8
THA.LOC104802463 Tarenaya hassleriana HOM05D005802 ORTHO05D006992 1.5e-78 297.0 270 58.9
AUR62013665 Chenopodium quinoa HOM05D005802 ORTHO05D006992 2.0e-78 296.6 270 57.8
Glyma.01G137000 Glycine max HOM05D005802 ORTHO05D006992 2.0e-78 296.6 264 60.2
Aa31LG10G14950 Aethionema arabicum HOM05D005802 ORTHO05D006992 4.4e-78 295.4 268 60.1
AT3G60660 Arabidopsis thaliana HOM05D005802 ORTHO05D006992 4.4e-78 295.4 266 61.3
Thhalv10006164m.g Eutrema salsugineum HOM05D005802 ORTHO05D006992 5.7e-78 295.0 269 60.6
MD02G1209900 Malus domestica HOM05D005802 ORTHO05D006992 5.7e-78 295.0 269 59.9
MSTRG.17165 Avicennia marina HOM05D005802 ORTHO05D006992 1.7e-77 293.5 265 58.1
TWI23G1076 Tripterygium wilfordii HOM05D005802 ORTHO05D006992 1.7e-77 293.5 265 61.9
BolC8t51149H Brassica oleracea HOM05D005802 ORTHO05D006992 2.2e-77 293.1 265 60.4
Sc02g0002770 Simmondsia chinensis HOM05D005802 ORTHO05D006992 2.8e-77 292.7 267 59.2
C08p35600 Brassica napus HOM05D005802 ORTHO05D006992 6.3e-77 291.6 268 60.1
CARHR171060 Cardamine hirsuta HOM05D005802 ORTHO05D006992 8.3e-77 291.2 268 60.4
Prupe.2G138600 Prunus persica HOM05D005802 ORTHO05D006992 1.1e-76 290.8 269 58.4
ClCG09G008930 Citrullus lanatus HOM05D005802 ORTHO05D006992 1.8e-76 290.0 266 59.0
Sed0027573 Sechium edule HOM05D005802 ORTHO05D006992 1.8e-76 290.0 267 59.9
A09p52850 Brassica napus HOM05D005802 ORTHO05D006992 3.2e-76 289.3 276 58.3
Os07g0484500 Oryza sativa ssp. japonica HOM05D005802 ORTHO05D006992 4.1e-76 288.9 277 54.5
Phvul.010G077700 Phaseolus vulgaris HOM05D005802 ORTHO05D006992 7.0e-76 288.1 264 58.3
Psat7g217800 Pisum sativum HOM05D005802 ORTHO05D006992 7.0e-76 288.1 266 56.8
TPR.G5024 Trifolium pratense HOM05D005802 ORTHO05D006992 7.0e-76 288.1 274 54.7
arahy.Tifrunner.gnm1.ann1.GQKS8P Arachis hypogaea HOM05D005802 ORTHO05D006992 9.2e-76 287.7 310 51.9
HanXRQChr03g0088101 Helianthus annuus HOM05D005802 ORTHO05D006992 1.2e-75 287.3 270 58.1
Sp5g02580 Schrenkiella parvula HOM05D005802 ORTHO05D006992 1.2e-75 287.3 268 59.0
Cc02_g24280 Coffea canephora HOM05D005802 ORTHO05D006992 1.6e-75 287.0 267 58.4
Peaxi162Scf01052g00014 Petunia axillaris HOM05D005802 ORTHO05D006992 2.0e-75 286.6 265 58.1
Hund27376 Selenicereus undatus HOM05D005802 ORTHO05D006992 2.7e-75 286.2 264 57.6
ECA234G0875 Erigeron canadensis HOM05D005802 ORTHO05D006992 4.5e-75 285.4 263 57.0
CAN.G106.25 Capsicum annuum HOM05D005802 ORTHO05D006992 1.0e-74 284.3 269 57.2
BcaC07g40584 Brassica carinata HOM05D005802 ORTHO05D006992 1.7e-74 283.5 272 58.8
RcHm_v2.0_Chr5g0028911 Rosa chinensis HOM05D005802 ORTHO05D006992 3.9e-74 282.3 268 57.5
CANSAT56G0664 Cannabis sativa HOM05D005802 ORTHO05D006992 6.6e-74 281.6 273 57.5
CsaV3_7G026130 Cucumis sativus L. HOM05D005802 ORTHO05D006992 6.6e-74 281.6 268 59.0
Migut.B01600 Erythranthe guttata HOM05D005802 ORTHO05D006992 8.6e-74 281.2 265 55.5
FAN06G1875 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.5e-73 279.6 283 55.8
PGSC0003DMG400007022 Solanum tuberosum HOM05D005802 ORTHO05D006992 5.6e-73 278.5 265 56.2
Carub.0005s2750 Capsella rubella HOM05D005802 ORTHO05D006992 3.6e-72 275.8 254 59.4
Dinv44124 Davidia involucrata HOM05D005802 ORTHO05D006992 4.7e-72 275.4 256 58.6
Zm00001eb321530 Zea mays HOM05D005802 ORTHO05D006992 4.7e-72 275.4 277 53.4
Solyc05g050900.4 Solanum lycopersicum HOM05D005802 ORTHO05D006992 1.8e-71 273.5 267 55.4
FAN10G1300 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.1e-71 272.7 273 56.4
FAN06G3617 Fragaria x ananassa HOM05D005802 ORTHO05D006992 4.0e-71 272.3 273 56.0
SalBow5G5068 Salvia bowleyana HOM05D005802 ORTHO05D006992 5.2e-71 271.9 265 54.7
Sopen05g029380 Solanum pennellii HOM05D005802 ORTHO05D006992 6.8e-71 271.6 267 55.1
vmacro21028 Vaccinium macrocarpon HOM05D005802 ORTHO05D006992 6.8e-71 271.6 265 57.4
FAN03G1851 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.5e-70 270.4 273 56.0
FAN01G2984 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.0e-70 270.0 277 55.2
Carub.0005s2739 Capsella rubella HOM05D005802 ORTHO05D006992 9.8e-70 267.7 261 57.5
Actinidia28320 Actinidia chinensis HOM05D005802 ORTHO05D006992 2.2e-69 266.5 218 65.6
FAN10G3200 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.9e-69 266.2 273 55.3
AUR62004168 Chenopodium quinoa HOM05D005802 ORTHO05D006992 4.1e-68 262.3 268 54.5
SGA_v2.0_scaffold153G36973 Striga asiatica HOM05D005802 ORTHO05D006992 2.0e-67 260.0 242 55.8
BraA09t40717Z Brassica rapa HOM05D005802 ORTHO05D006992 1.3e-66 257.3 333 47.7
Nitab4.5_0001329g0060 Nicotiana tabacum HOM05D005802 ORTHO05D006992 5.0e-66 255.4 260 53.5
VMungo0331G0187 Vigna mungo HOM05D005802 ORTHO05D006992 2.8e-64 249.6 241 56.4
CDE04G3422 Ceratophyllum demersum HOM05D005802 ORTHO05D006992 3.6e-64 249.2 287 49.8
FvH4_7g11150 Fragaria vesca HOM05D005802 ORTHO05D006992 4.7e-64 248.8 244 56.6
Mapoly0010s0189 Marchantia polymorpha HOM05D005802 ORTHO05D006992 6.8e-63 245.0 268 51.5
TAR375G0251 Trochodendron aralioides HOM05D005802 ORTHO05D006992 2.2e-61 240.0 190 66.3
Nitab4.5_0005050g0030 Nicotiana tabacum HOM05D005802 ORTHO05D006992 5.4e-60 235.3 270 48.9
AagrBONN_evm.TU.Sc2ySwM_368.1567 Anthoceros agrestis HOM05D005802 ORTHO05D006992 3.4e-54 216.1 264 47.7
Ca_02431_v3 Cicer arietinum L. HOM05D005802 ORTHO05D006992 3.4e-54 216.1 257 48.2
EL10Ac1g00841 Beta vulgaris HOM05D005802 ORTHO05D006992 9.9e-54 214.5 264 47.7
Lalb_Chr12g0208021 Lupinus albus HOM05D005802 ORTHO05D006992 9.9e-54 214.5 181 62.4
Pp3c6_12030 Physcomitrium patens HOM05D005802 ORTHO05D006992 2.9e-53 213.0 268 45.9
Oeu051925.1 Olea europaea HOM05D005802 ORTHO05D006992 8.3e-53 211.5 242 48.8
SMO347G0664 Selaginella moellendorffii HOM05D005802 ORTHO05D006992 4.1e-52 209.1 226 48.7
Lj7A534G38 Lonicera japonica HOM05D000908 ORTHO05D000789 3.5e-51 206.1 241 48.1
RcHm_v2.0_Chr1g0349231 Rosa chinensis HOM05D005802 ORTHO05D006992 2.1e-48 196.8 191 55.0
Oeu051926.1 Olea europaea HOM05D005802 ORTHO05D006992 2.2e-45 186.8 132 67.4
MELO3C021033.2 Cucumis melo HOM05D005802 ORTHO05D006992 2.6e-38 163.3 194 49.5
Actinidia33479 Actinidia chinensis HOM05D005802 ORTHO05D006992 1.9e-36 157.1 131 63.4
FAN03G0906 Fragaria x ananassa HOM05D005802 ORTHO05D006992 6.6e-34 148.7 113 69.9
FAN03G0348 Fragaria x ananassa HOM05D005802 ORTHO05D006992 8.7e-34 148.3 113 69.0
Ah.05g173880 Amaranthus hybridus HOM05D005802 ORTHO05D006992 9.6e-33 144.8 107 68.2
Cre16.g672500 Chlamydomonas reinhardtii HOM05D005802 ORTHO05D006992 1.3e-29 134.4 265 34.7
RcHm_v2.0_Chr1g0349201 Rosa chinensis HOM05D005802 ORTHO05D006992 1.7e-29 134.0 339 32.7
RcHm_v2.0_Chr1g0349251 Rosa chinensis HOM05D005802 ORTHO05D006992 3.5e-27 126.3 84 73.8
CBR_g48776 Chara braunii HOM05D005802 ORTHO05D006992 1.9e-25 120.6 194 40.2
Cc00_g05160 Coffea canephora HOM05D005802 ORTHO05D006992 2.1e-24 117.1 109 60.6
Glyma.03G031466 Glycine max HOM05D005802 ORTHO05D006992 1.8e-23 114.0 84 64.3
Cc00_g05150 Coffea canephora HOM05D005802 ORTHO05D006992 2.4e-23 113.6 111 58.6
FAN10G4230 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.4e-20 104.4 56 85.7
Ah.05g173870 Amaranthus hybridus HOM05D005802 ORTHO05D006992 1.9e-20 104.0 141 46.1
Oeu055514.1 Olea europaea HOM05D005802 ORTHO05D006992 2.5e-20 103.6 101 54.5
SHI22578 Sapria himalayana HOM05D005802 ORTHO05D006992 2.5e-20 103.6 100 56.0
RcHm_v2.0_Chr1g0349171 Rosa chinensis HOM05D005802 ORTHO05D006992 1.1e-17 94.7 56 85.7
Dinv44127 Davidia involucrata HOM05D005802 ORTHO05D006992 9.6e-17 91.7 69 63.8
SHI22577 Sapria himalayana HOM05D005802 ORTHO05D006992 9.6e-17 91.7 92 51.1
RcHm_v2.0_Chr1g0349241 Rosa chinensis HOM05D005802 ORTHO05D006992 1.3e-16 91.3 95 51.6
Hma1.2p1_0072F.1_g038280 Hydrangea macrophylla HOM05D005802 ORTHO05D006992 3.7e-16 89.7 100 51.0
ECA240G2706 Erigeron canadensis HOM05D001255 ORTHO05D001246 2.4e-15 87.0 72 56.9
RcHm_v2.0_Chr1g0349161 Rosa chinensis HOM05D005802 ORTHO05D006992 9.0e-15 85.1 126 43.7
C04p32020 Brassica napus HOM05D010895 ORTHO05D012939 1.2e-14 84.7 137 40.1
Oeu045806.1 Olea europaea HOM05D005802 ORTHO05D006992 6.5e-13 79.0 72 54.2
BolC4t24754H Brassica oleracea HOM05D005802 ORTHO05D006992 4.2e-12 76.3 103 45.6
Lalb_Chr12g0208011 Lupinus albus HOM05D005802 ORTHO05D006992 5.5e-12 75.9 69 55.1
CARHR170760 Cardamine hirsuta HOM05D005802 ORTHO05D006992 3.5e-11 73.2 69 58.0
SGA_v2.0_scaffold123G33454 Striga asiatica HOM05D000451 ORTHO05D000351 7.9e-11 72.0 109 38.5


User provided reference genes

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