Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1149G149 Amborella trichopoda HOM05D007725 ORTHO05D009774 1.4e-140 503.8 454 100.0
Nn1g03245 Nelumbo nucifera HOM05D007725 ORTHO05D009774 1.4e-60 238.0 455 62.2
TAR624G0507 Trochodendron aralioides HOM05D007725 ORTHO05D009774 1.8e-60 237.7 451 72.1
SEGI_22467 Sequoiadendron giganteum HOM05D007725 ORTHO05D009774 5.3e-60 236.1 443 65.2
CSS0027076 Camellia sinensis var. sinensis HOM05D007725 ORTHO05D009774 7.9e-56 222.2 452 53.3
Haze_09790 Corylus avellana HOM05D007725 ORTHO05D009774 3.0e-55 220.3 465 67.1
Glyma.08G326100 Glycine max HOM05D007725 ORTHO05D009774 1.1e-54 218.4 459 56.4
GSVIVG01037783001 Vitis vinifera HOM05D007725 ORTHO05D009774 1.5e-54 218.0 450 56.0
Nitab4.5_0002517g0030 Nicotiana tabacum HOM05D007725 ORTHO05D009774 5.6e-54 216.1 453 54.5
COL.COLO4_09791 Corchorus olitorius HOM05D007725 ORTHO05D009774 9.6e-54 215.3 452 58.2
Peaxi162Scf00955g00014 Petunia axillaris HOM05D007725 ORTHO05D009774 2.1e-53 214.2 453 54.5
VMungo0540G1375 Vigna mungo HOM05D007725 ORTHO05D009774 3.7e-53 213.4 454 56.4
PSO478G1598 Papaver somniferum HOM05D007725 ORTHO05D009774 4.8e-53 213.0 456 60.1
Hma1.2p1_2796F.1_g328670 Hydrangea macrophylla HOM05D007725 ORTHO05D009774 1.8e-52 211.1 451 66.5
Nn1g03425 Nelumbo nucifera HOM05D007725 ORTHO05D009774 6.9e-52 209.1 438 67.6
Dinv10315 Davidia involucrata HOM05D007725 ORTHO05D009774 1.5e-51 208.0 432 70.8
Cfa020227 Carpinus fangiana HOM05D007725 ORTHO05D009774 3.4e-51 206.8 469 61.8
Nitab4.5_0000163g0300 Nicotiana tabacum HOM05D007725 ORTHO05D009774 3.4e-51 206.8 453 59.4
Duzib170G0716 Durio zibethinus HOM05D007725 ORTHO05D009774 7.6e-51 205.7 447 52.3
Lj1P886T16 Lonicera japonica HOM05D007725 ORTHO05D009774 2.2e-50 204.1 450 59.1
PGSC0003DMG402029798 Solanum tuberosum HOM05D007725 ORTHO05D009774 3.8e-50 203.4 453 53.9
Sopen12g007550 Solanum pennellii HOM05D007725 ORTHO05D009774 8.4e-50 202.2 453 53.4
Cpa.g.sc12.189 Carica papaya HOM05D007725 ORTHO05D009774 1.9e-49 201.1 455 62.2
Solyc12g015650.3 Solanum lycopersicum HOM05D007725 ORTHO05D009774 1.9e-49 201.1 453 53.4
Ciclev10008214m.g Citrus clementina HOM05D007725 ORTHO05D009774 6.0e-48 196.1 453 59.2
ClCG09G021110 Citrullus lanatus HOM05D007725 ORTHO05D009774 1.3e-45 188.3 453 57.0
Manes.03G138100 Manihot esculenta HOM05D007725 ORTHO05D009774 1.6e-45 188.0 452 63.3
Cc05_g14730 Coffea canephora HOM05D007725 ORTHO05D009774 3.7e-45 186.8 455 59.3
MSTRG.15782 Avicennia marina HOM05D007725 ORTHO05D009774 4.8e-45 186.4 451 57.4
Gohir.A11G277300 Gossypium hirsutum HOM05D007725 ORTHO05D009774 8.2e-45 185.7 448 45.5
Gorai.007G311000 Gossypium raimondii HOM05D007725 ORTHO05D009774 1.8e-44 184.5 448 42.2
Psat5g175640 Pisum sativum HOM05D007725 ORTHO05D009774 6.9e-44 182.6 454 58.1
GSVIVG01037784001 Vitis vinifera HOM05D007725 ORTHO05D009774 1.9e-41 174.5 458 52.6
QL08p005480 Quercus lobata HOM05D007725 ORTHO05D009774 3.2e-41 173.7 452 58.4
Nn1g07446 Nelumbo nucifera HOM05D007725 ORTHO05D009774 9.3e-41 172.2 454 44.9
MELO3C024908.2 Cucumis melo HOM05D007725 ORTHO05D009774 5.1e-39 166.4 340 52.6
AUR62040655 Chenopodium quinoa HOM05D007725 ORTHO05D009774 6.7e-39 166.0 454 63.0
CsaV3_7G018510 Cucumis sativus L. HOM05D007725 ORTHO05D009774 6.7e-39 166.0 452 55.8
Ca_26464_v3 Cicer arietinum L. HOM05D007725 ORTHO05D009774 8.7e-39 165.6 448 47.1
Phvul.006G053700 Phaseolus vulgaris HOM05D007725 ORTHO05D009774 1.3e-37 161.8 359 61.6
Gohir.D11G287700 Gossypium hirsutum HOM05D007725 ORTHO05D009774 4.8e-37 159.8 328 46.0
Medtr3g056580 Medicago truncatula HOM05D007725 ORTHO05D009774 8.2e-37 159.1 451 39.0
Aa31LG8G7000 Aethionema arabicum HOM05D007725 ORTHO05D009774 1.1e-36 158.7 458 55.0
CARHR095760 Cardamine hirsuta HOM05D007725 ORTHO05D009774 1.8e-36 157.9 456 53.9
AUR62017062 Chenopodium quinoa HOM05D007725 ORTHO05D009774 2.4e-36 157.5 452 61.7
DCAR_022605 Daucus carota HOM05D007725 ORTHO05D009774 9.0e-36 155.6 337 52.5
arahy.Tifrunner.gnm1.ann1.LCTM2T Arachis hypogaea HOM05D007725 ORTHO05D009774 2.6e-35 154.1 454 52.0
AL3G33870 Arabidopsis lyrata HOM05D007725 ORTHO05D009774 3.4e-35 153.7 450 53.6
AT3G20170 Arabidopsis thaliana HOM05D007725 ORTHO05D009774 1.7e-34 151.4 455 53.4
HanXRQChr11g0333971 Helianthus annuus HOM05D007725 ORTHO05D009774 1.7e-34 151.4 458 40.2
Migut.M01753 Erythranthe guttata HOM05D007725 ORTHO05D009774 2.2e-34 151.0 337 52.8
EL10Ac4g07611 Beta vulgaris HOM05D007725 ORTHO05D009774 2.9e-34 150.6 336 51.5
Carub.0003s2010 Capsella rubella HOM05D007725 ORTHO05D009774 5.0e-34 149.8 459 53.4
arahy.Tifrunner.gnm1.ann1.TWJV4J Arachis hypogaea HOM05D007725 ORTHO05D009774 7.2e-33 146.0 340 47.9
SalBow8G2031 Salvia bowleyana HOM05D007725 ORTHO05D009774 1.0e-31 142.1 312 56.1
arahy.Tifrunner.gnm1.ann1.Q8DMES Arachis hypogaea HOM05D007725 ORTHO05D009774 3.9e-31 140.2 454 52.2
Thhalv10020642m.g Eutrema salsugineum HOM05D007725 ORTHO05D009774 3.9e-31 140.2 457 52.5
BcaB04g19094 Brassica carinata HOM05D007725 ORTHO05D009774 5.1e-31 139.8 456 53.7
Sp3g18200 Schrenkiella parvula HOM05D007725 ORTHO05D009774 1.5e-30 138.3 456 51.5
PGR031G2940 Punica granatum HOM05D007725 ORTHO05D009774 2.0e-30 137.9 459 38.8
TPR.G1953 Trifolium pratense HOM05D007725 ORTHO05D009774 2.5e-30 137.5 454 26.9
A05p28800 Brassica napus HOM05D007725 ORTHO05D009774 9.7e-30 135.6 454 50.9
BolC5t33143H Brassica oleracea HOM05D007725 ORTHO05D009774 1.7e-29 134.8 454 50.9
Sed0002917 Sechium edule HOM05D007725 ORTHO05D009774 2.2e-29 134.4 339 47.8
C05p44210 Brassica napus HOM05D007725 ORTHO05D009774 2.8e-29 134.0 454 50.9
C03p50970 Brassica napus HOM05D007725 ORTHO05D009774 4.8e-29 133.3 341 47.8
BolC3t17381H Brassica oleracea HOM05D007725 ORTHO05D009774 6.3e-29 132.9 341 47.5
A03p41610 Brassica napus HOM05D007725 ORTHO05D009774 1.2e-27 128.6 340 47.4
BraA03t13314Z Brassica rapa HOM05D007725 ORTHO05D009774 1.2e-27 128.6 340 47.4
Oeu005490.1 Olea europaea HOM05D007725 ORTHO05D009774 1.3e-26 125.2 173 42.2
COL.COLO4_09793 Corchorus olitorius HOM05D007725 ORTHO05D009774 3.8e-26 123.6 189 40.2
SGA_v2.0_scaffold168G38532 Striga asiatica HOM05D007725 ORTHO05D009774 3.8e-26 123.6 337 27.9
Thecc.07G022000 Theobroma cacao HOM05D007725 ORTHO05D009774 9.4e-25 119.0 167 43.1
HPP92_006089 Vanilla planifolia HOM05D007725 ORTHO05D009774 1.5e-22 111.7 455 49.9
Lj6g0003901 Lotus japonicus HOM05D007725 ORTHO05D009774 4.5e-19 100.1 343 42.9
Lj6g0016094 Lotus japonicus HOM05D007725 ORTHO05D009774 5.5e-17 93.2 451 47.0
Lj2g0017250 Lotus japonicus HOM05D007725 ORTHO05D009774 2.1e-16 91.3 341 24.6
TPR.G1910 Trifolium pratense HOM05D007725 ORTHO05D009774 3.6e-16 90.5 74 60.8
BraA05t21757Z Brassica rapa HOM05D007725 ORTHO05D009774 6.1e-16 89.7 173 34.7
Lj6g0024671 Lotus japonicus HOM05D007725 ORTHO05D009774 5.2e-15 86.7 455 45.5
BcaC01g03576 Brassica carinata HOM05D007725 ORTHO05D009774 2.9e-10 70.9 142 33.8
BcaC02g11617 Brassica carinata HOM05D007725 ORTHO05D009774 1.1e-09 68.9 50 68.0
CDE04G3331 Ceratophyllum demersum HOM05D000050 ORTHO05D009774 2.0e-06 58.2 74 45.9
CBR_g50708 Chara braunii HOM05D007725 ORTHO05D009774 2.6e-06 57.8 74 36.5


User provided reference genes

Program Settings