Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1149G086 Amborella trichopoda HOM05D006454 ORTHO05D008024 3.4e-209 731.9 512 100.0
MBI16_g11566_MAGBIO Magnolia biondii HOM05D006454 ORTHO05D008024 2.3e-96 357.1 526 63.5
TAR626G0559 Trochodendron aralioides HOM05D006454 ORTHO05D008024 3.8e-83 313.2 473 63.8
MD11G1204700 Malus domestica HOM05D006454 ORTHO05D008024 2.5e-82 310.5 492 62.2
Prupe.4G234400 Prunus persica HOM05D006454 ORTHO05D008024 2.1e-81 307.4 473 64.5
CSS0002313 Camellia sinensis var. sinensis HOM05D006454 ORTHO05D000036 1.2e-79 301.6 366 73.8
QL08p005504 Quercus lobata HOM05D006454 ORTHO05D008024 1.5e-79 301.2 510 60.4
FvH4_3g24060 Fragaria vesca HOM05D006454 ORTHO05D008024 3.3e-79 300.1 504 59.9
FAN11G0689 Fragaria x ananassa HOM05D006454 ORTHO05D008024 3.3e-79 300.1 504 59.9
FAN21G2064 Fragaria x ananassa HOM05D006454 ORTHO05D008024 1.7e-78 297.7 504 58.7
FAN25G3289 Fragaria x ananassa HOM05D006454 ORTHO05D008024 2.2e-78 297.4 507 59.0
Nitab4.5_0000163g0310 Nicotiana tabacum HOM05D006454 ORTHO05D008024 2.2e-78 297.4 490 61.6
SalBow8G0989 Salvia bowleyana HOM05D006454 ORTHO05D008024 2.8e-78 297.0 480 62.7
FAN25G1123 Fragaria x ananassa HOM05D006454 ORTHO05D008024 4.8e-78 296.2 507 59.0
RcHm_v2.0_Chr5g0042641 Rosa chinensis HOM05D006454 ORTHO05D008024 1.1e-77 295.0 505 59.8
MELO3C024909.2 Cucumis melo HOM05D006454 ORTHO05D008024 1.4e-77 294.7 479 59.7
Migut.M01675 Erythranthe guttata HOM05D006454 ORTHO05D008024 7.0e-77 292.4 499 58.5
ECA246G2030 Erigeron canadensis HOM05D006454 ORTHO05D008024 2.7e-76 290.4 517 55.3
Haze_09788 Corylus avellana HOM05D006454 ORTHO05D008024 4.5e-76 289.7 478 60.7
Cfa020229 Carpinus fangiana HOM05D006454 ORTHO05D008024 1.0e-75 288.5 483 60.5
Thecc.07G022300 Theobroma cacao HOM05D006454 ORTHO05D008024 1.7e-75 287.7 489 58.7
CDE12G0728 Ceratophyllum demersum HOM05D006454 ORTHO05D008024 2.9e-75 287.0 485 59.8
Aqoxy4G02215 Aquilegia oxysepala HOM05D006454 ORTHO05D008024 1.5e-74 284.6 491 58.7
DCAR_013215 Daucus carota HOM05D006454 ORTHO05D008024 2.5e-74 283.9 469 59.1
HanXRQChr08g0235811 Helianthus annuus HOM05D006454 ORTHO05D008024 2.5e-74 283.9 477 56.4
Lj1A885G30 Lonicera japonica HOM05D006454 ORTHO05D008024 3.6e-73 280.0 352 75.0
Solyc12g015640.2 Solanum lycopersicum HOM05D006454 ORTHO05D008024 4.7e-73 279.6 512 58.6
Lalb_Chr04g0247971 Lupinus albus HOM05D006454 ORTHO05D008024 4.0e-72 276.6 468 60.3
Carub.0008s1595 Capsella rubella HOM05D006454 ORTHO05D008024 5.2e-72 276.2 480 57.3
Peaxi162Scf00955g00214 Petunia axillaris HOM05D006454 ORTHO05D008024 5.2e-72 276.2 517 58.4
Phvul.008G275700 Phaseolus vulgaris HOM05D006454 ORTHO05D008024 3.4e-71 273.5 486 57.6
Sp6g17500 Schrenkiella parvula HOM05D006454 ORTHO05D008024 3.4e-71 273.5 468 57.9
Ca_06374_v3 Cicer arietinum L. HOM05D006454 ORTHO05D000136 7.5e-71 272.3 327 78.0
CAN.G1239.14 Capsicum annuum HOM05D006454 ORTHO05D008024 1.3e-70 271.6 483 60.9
Medtr5g094610 Medicago truncatula HOM05D006454 ORTHO05D008024 2.2e-70 270.8 515 57.1
Sed0021870 Sechium edule HOM05D006454 ORTHO05D008024 6.3e-70 269.2 505 56.0
Sopen12g007540 Solanum pennellii HOM05D006454 ORTHO05D008024 6.3e-70 269.2 514 58.2
Aa31LG3G11530 Aethionema arabicum HOM05D006454 ORTHO05D008024 8.3e-70 268.9 472 57.6
C03p16380 Brassica napus HOM05D006454 ORTHO05D008024 1.8e-69 267.7 493 56.2
Gohir.D13G138500 Gossypium hirsutum HOM05D006454 ORTHO05D008024 5.4e-69 266.2 515 54.4
Gorai.013G155100 Gossypium raimondii HOM05D006454 ORTHO05D008024 5.4e-69 266.2 509 55.0
BcaC01g06383 Brassica carinata HOM05D006454 ORTHO05D008024 7.0e-69 265.8 493 56.0
CANSAT11G2145 Cannabis sativa HOM05D006454 ORTHO05D008024 1.6e-68 264.6 474 58.0
Gohir.A13G134866 Gossypium hirsutum HOM05D006454 ORTHO05D008024 1.6e-68 264.6 507 55.0
BolC3t14060H Brassica oleracea HOM05D006454 ORTHO05D008024 2.0e-68 264.2 493 56.0
MD03G1188700 Malus domestica HOM05D006454 ORTHO05D008024 2.7e-68 263.8 505 57.4
TPR.G14154 Trifolium pratense HOM05D006454 ORTHO05D008024 2.7e-68 263.8 474 58.0
BcaB01g04358 Brassica carinata HOM05D006454 ORTHO05D008024 7.7e-68 262.3 476 56.9
Thhalv10013311m.g Eutrema salsugineum HOM05D006454 ORTHO05D008024 7.7e-68 262.3 469 46.7
A03p13940 Brassica napus HOM05D006454 ORTHO05D008024 1.0e-67 261.9 475 57.1
BraA03t10695Z Brassica rapa HOM05D006454 ORTHO05D008024 1.0e-67 261.9 475 57.1
Lsat_1_v5_gn_5_8060 Lactuca sativa HOM05D006454 ORTHO05D008024 8.6e-67 258.8 471 57.1
CiPaw.11G201000 Carya illinoinensis HOM05D006454 ORTHO05D008024 3.2e-66 256.9 335 73.1
Sabra11G0073300 Salix brachista HOM05D006454 ORTHO05D008024 3.2e-66 256.9 510 55.7
CARHR268890 Cardamine hirsuta HOM05D006454 ORTHO05D008024 4.2e-66 256.5 335 72.2
Nitab4.5_0002517g0040 Nicotiana tabacum HOM05D006454 ORTHO05D008024 5.5e-66 256.1 487 57.1
PSO675G2716 Papaver somniferum HOM05D006454 ORTHO05D008024 7.2e-66 255.8 477 56.0
Sabra11G0078800 Salix brachista HOM05D006454 ORTHO05D008024 7.2e-66 255.8 510 55.7
Potri.001G361800 Populus trichocarpa HOM05D006454 ORTHO05D008024 9.5e-66 255.4 511 54.6
vmacro11560 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 1.6e-65 254.6 398 65.3
Oeu054328.1 Olea europaea HOM05D006454 ORTHO05D008024 2.1e-65 254.2 473 58.4
AL8G31150 Arabidopsis lyrata HOM05D006454 ORTHO05D008024 3.6e-65 253.4 487 55.6
Rhsim06G0226800 Rhododendron simsii HOM05D006454 ORTHO05D008024 3.6e-65 253.4 367 67.6
Atru.chr2.3605 Acer truncatum HOM05D006454 ORTHO05D008024 4.7e-65 253.1 510 54.9
TWI39G0040 Tripterygium wilfordii HOM05D006454 ORTHO05D008024 4.7e-65 253.1 476 58.6
Ciclev10008511m.g Citrus clementina HOM05D006454 ORTHO05D008024 8.0e-65 252.3 485 55.9
Actinidia05032 Actinidia chinensis HOM05D006454 ORTHO05D008024 1.8e-64 251.1 525 54.7
AT5G55580 Arabidopsis thaliana HOM05D006454 ORTHO05D008024 4.0e-64 250.0 479 55.1
CsaV3_7G018450 Cucumis sativus L. HOM05D006454 ORTHO05D008024 4.0e-64 250.0 485 56.7
MSTRG.6985 Avicennia marina HOM05D006454 ORTHO05D008024 6.8e-64 249.2 539 53.4
Cc05_g14700 Coffea canephora HOM05D006454 ORTHO05D008024 6.8e-64 249.2 504 55.0
ClCG09G021120 Citrullus lanatus HOM05D006454 ORTHO05D008024 4.4e-63 246.5 480 56.0
THA.LOC104813444 Tarenaya hassleriana HOM05D006454 ORTHO05D008024 9.8e-63 245.4 480 54.2
PSO541G2941 Papaver somniferum HOM05D006454 ORTHO05D008024 2.2e-62 244.2 530 53.0
Dinv40835 Davidia involucrata HOM05D006454 ORTHO05D008024 6.3e-62 242.7 291 80.8
LjContig00272g0005215 Lotus japonicus HOM05D006454 ORTHO05D008024 1.4e-61 241.5 489 54.6
Glyma.14G015800 Glycine max HOM05D006454 ORTHO05D008024 3.1e-61 240.4 488 54.3
Manes.15G063200 Manihot esculenta HOM05D006454 ORTHO05D008024 3.1e-61 240.4 510 54.1
arahy.Tifrunner.gnm1.ann1.AYWF3K Arachis hypogaea HOM05D006454 ORTHO05D008024 1.6e-60 238.0 463 55.9
arahy.Tifrunner.gnm1.ann1.IBL7LR Arachis hypogaea HOM05D006454 ORTHO05D008024 2.7e-60 237.3 327 70.9
AUR62017060 Chenopodium quinoa HOM05D006454 ORTHO05D008024 2.3e-59 234.2 465 56.3
Eucgr.F03524 Eucalyptus grandis HOM05D006454 ORTHO05D008024 9.5e-58 228.8 473 54.8
VMungo0647G1066 Vigna mungo HOM05D006454 ORTHO05D008024 2.8e-57 227.3 477 54.9
SGA_v2.0_scaffold171G38887 Striga asiatica HOM05D006454 ORTHO05D008024 3.6e-57 226.9 518 54.2
Glyma.02G297900 Glycine max HOM05D006454 ORTHO05D008024 1.5e-55 221.5 465 55.1
AUR62040658 Chenopodium quinoa HOM05D006454 ORTHO05D008024 2.9e-54 217.2 477 50.1
GSVIVG01037780001 Vitis vinifera HOM05D006454 ORTHO05D008024 6.4e-54 216.1 444 57.0
HPP92_007883 Vanilla planifolia HOM05D006454 ORTHO05D008024 2.7e-52 210.7 482 53.1
CiPaw.12G136000 Carya illinoinensis HOM05D006454 ORTHO05D008024 3.5e-52 210.3 488 51.0
Ah.04g166440 Amaranthus hybridus HOM05D006454 ORTHO05D008024 5.0e-51 206.5 465 52.7
PGSC0003DMG401029813 Solanum tuberosum HOM05D006454 ORTHO05D008024 5.0e-51 206.5 291 80.1
EL10Ac4g07613 Beta vulgaris HOM05D006454 ORTHO05D008024 2.1e-49 201.1 470 51.7
Psat2g008800 Pisum sativum HOM05D006454 ORTHO05D008024 3.6e-49 200.3 489 51.9
CAN.G489.2 Capsicum annuum HOM05D006454 ORTHO05D008024 1.7e-46 191.4 294 56.8
COL.COLO4_09787 Corchorus olitorius HOM05D006454 ORTHO05D008024 4.1e-45 186.8 473 51.8
Hund01917 Selenicereus undatus HOM05D006454 ORTHO05D008024 1.2e-44 185.3 355 61.4
PGR031G1939 Punica granatum HOM05D006454 ORTHO05D008024 2.0e-44 184.5 503 47.3
Oeu031063.1 Olea europaea HOM05D006454 ORTHO05D008024 6.6e-43 179.5 291 74.6
Actinidia00093 Actinidia chinensis HOM05D006454 ORTHO05D008024 5.6e-42 176.4 456 53.5
Prupe.4G234100 Prunus persica HOM05D006454 ORTHO05D008024 7.8e-36 156.0 234 81.6
Cpa.g.sc12.192 Carica papaya HOM05D006454 ORTHO05D008024 1.5e-34 151.8 118 73.7
Zm00001eb107900 Zea mays HOM05D006454 ORTHO05D008024 5.6e-34 149.8 477 47.6
Sc16g0003560 Simmondsia chinensis HOM05D006454 ORTHO05D008024 6.2e-33 146.4 379 52.8
Nn1g07440 Nelumbo nucifera HOM05D006454 ORTHO05D008024 8.1e-33 146.0 123 70.7
Hund01916 Selenicereus undatus HOM05D006454 ORTHO05D008024 8.1e-33 146.0 503 27.8
Cpa.g.sc12.193 Carica papaya HOM05D006454 ORTHO05D008024 1.8e-32 144.8 270 37.0
Os07g0583200 Oryza sativa ssp. japonica HOM05D006454 ORTHO05D008024 3.1e-32 144.1 484 45.2
HPP92_007898 Vanilla planifolia HOM05D006454 ORTHO05D008024 8.9e-32 142.5 285 67.4
BcaNung06723 Brassica carinata HOM05D000081 ORTHO05D008024 2.9e-30 137.5 256 50.0
unitig_899.g15274 Utricularia gibba HOM05D006454 ORTHO05D008024 7.8e-28 129.4 93 65.6
Mapoly0042s0040 Marchantia polymorpha HOM05D006454 ORTHO05D008024 1.7e-27 128.3 422 48.3
SEGI_11937 Sequoiadendron giganteum HOM05D047912 ORTHO05D008024 4.3e-26 123.6 328 56.1
Pp3c7_3780 Physcomitrium patens HOM05D006454 ORTHO05D008024 8.1e-25 119.4 536 43.8
Pp3c11_22990 Physcomitrium patens HOM05D006454 ORTHO05D008024 6.4e-22 109.8 345 52.5
BolC2t07758H Brassica oleracea HOM05D006454 ORTHO05D008024 3.5e-20 104.0 103 51.5
vmacro10144 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 1.1e-13 82.4 351 27.1
BcaNung06724 Brassica carinata HOM05D006454 ORTHO05D008024 1.9e-13 81.6 54 66.7
AagrBONN_evm.TU.Sc2ySwM_117.1902 Anthoceros agrestis HOM05D006454 ORTHO05D008024 3.2e-13 80.9 289 27.0
PRCOL_00000825 Prasinoderma coloniale HOM05D006454 ORTHO05D008024 7.9e-12 76.3 114 35.1
MCO01G181 Micromonas commoda HOM05D006454 ORTHO05D008024 4.0e-08 63.9 126 42.9


User provided reference genes

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