Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1147G022 Amborella trichopoda HOM05D004385 ORTHO05D005245 0.0e+00 1147.5 573 100.0
MBI11_g07424_MAGBIO Magnolia biondii HOM05D004385 ORTHO05D005245 2.9e-180 636.0 524 60.3
TAR626G1834 Trochodendron aralioides HOM05D004385 ORTHO05D005245 1.2e-173 614.0 497 61.6
Dinv26468 Davidia involucrata HOM05D004385 ORTHO05D005245 1.3e-172 610.5 526 58.0
Potri.018G138206 Populus trichocarpa HOM05D004385 ORTHO05D005245 6.4e-172 608.2 497 60.0
Manes.03G078300 Manihot esculenta HOM05D004385 ORTHO05D005245 3.0e-169 599.4 491 59.7
QL11p009243 Quercus lobata HOM05D004385 ORTHO05D005245 3.9e-169 599.0 528 57.6
Rhsim05G0069600 Rhododendron simsii HOM05D004385 ORTHO05D005245 8.7e-169 597.8 505 59.8
Haze_19053 Corylus avellana HOM05D004385 ORTHO05D005245 1.5e-168 597.0 503 59.0
Cpa.g.sc123.33 Carica papaya HOM05D004385 ORTHO05D005245 3.3e-168 595.9 488 58.8
Prupe.1G065500 Prunus persica HOM05D004385 ORTHO05D005245 3.3e-168 595.9 497 58.8
Nn1g09800 Nelumbo nucifera HOM05D004385 ORTHO05D005245 4.3e-168 595.5 506 58.3
TWI32G0217 Tripterygium wilfordii HOM05D004385 ORTHO05D005245 4.3e-168 595.5 530 55.8
Thecc.09G194100 Theobroma cacao HOM05D004385 ORTHO05D005245 5.6e-168 595.1 492 59.3
Ca_20811_v3 Cicer arietinum L. HOM05D004385 ORTHO05D005245 8.1e-167 591.3 522 55.9
vmacro22292 Vaccinium macrocarpon HOM05D004385 ORTHO05D005245 8.1e-167 591.3 506 59.5
Duzib168G1467 Durio zibethinus HOM05D004385 ORTHO05D005245 1.1e-166 590.9 478 60.9
Gorai.009G001300 Gossypium raimondii HOM05D004385 ORTHO05D005245 4.0e-166 589.0 492 59.6
Gohir.A05G001100 Gossypium hirsutum HOM05D004385 ORTHO05D005245 6.9e-166 588.2 492 59.6
MD16G1239400 Malus domestica HOM05D004385 ORTHO05D005245 6.9e-166 588.2 499 57.9
FvH4_4g06230 Fragaria vesca HOM05D004385 ORTHO05D005245 1.2e-165 587.4 500 57.2
Lj3g0012868 Lotus japonicus HOM05D004385 ORTHO05D005245 1.2e-165 587.4 520 56.2
Gohir.D05G001400 Gossypium hirsutum HOM05D004385 ORTHO05D005245 1.5e-165 587.0 492 59.6
Medtr4g068230 Medicago truncatula HOM05D004385 ORTHO05D005245 1.5e-165 587.0 518 55.4
Eucgr.C02022 Eucalyptus grandis HOM05D004385 ORTHO05D005245 2.6e-165 586.3 513 57.3
VMungo1127G2221 Vigna mungo HOM05D004385 ORTHO05D005245 2.6e-165 586.3 489 57.9
CsaV3_2G035400 Cucumis sativus L. HOM05D004385 ORTHO05D005245 9.9e-165 584.3 574 53.0
Hma1.2p1_0284F.1_g113840 Hydrangea macrophylla HOM05D004385 ORTHO05D005245 9.9e-165 584.3 512 58.0
ClCG06G014050 Citrullus lanatus HOM05D004385 ORTHO05D005245 1.3e-164 583.9 498 57.6
RcHm_v2.0_Chr4g0397951 Rosa chinensis HOM05D004385 ORTHO05D005245 2.9e-164 582.8 526 55.1
DCAR_023663 Daucus carota HOM05D004385 ORTHO05D005245 3.8e-164 582.4 495 58.8
COL.COLO4_24913 Corchorus olitorius HOM05D004385 ORTHO05D005245 6.4e-164 581.6 490 59.2
AUR62028001 Chenopodium quinoa HOM05D004385 ORTHO05D005245 8.4e-164 581.3 495 58.0
CSS0002376 Camellia sinensis var. sinensis HOM05D004385 ORTHO05D005245 1.4e-163 580.5 522 57.9
TPR.G34256 Trifolium pratense HOM05D004385 ORTHO05D005245 1.9e-163 580.1 508 56.5
Cc00_g00420 Coffea canephora HOM05D004385 ORTHO05D005245 3.2e-163 579.3 488 59.6
Phvul.011G051400 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 5.5e-163 578.6 489 57.9
Glyma.12G049000 Glycine max HOM05D004385 ORTHO05D005245 7.1e-163 578.2 515 55.5
Manes.03G078400 Manihot esculenta HOM05D004385 ORTHO05D005245 7.1e-163 578.2 490 57.8
Oeu028831.1 Olea europaea HOM05D004385 ORTHO05D005245 7.1e-163 578.2 545 54.5
Medtr4g068270 Medicago truncatula HOM05D004385 ORTHO05D005245 1.2e-162 577.4 522 55.0
Medtr4g068240 Medicago truncatula HOM05D004385 ORTHO05D005245 2.1e-162 576.6 519 55.3
Haze_19054 Corylus avellana HOM05D004385 ORTHO05D005245 2.7e-162 576.2 525 56.8
Sopen07g005830 Solanum pennellii HOM05D004385 ORTHO05D005245 4.6e-162 575.5 490 58.0
FAN12G0289 Fragaria x ananassa HOM05D004385 ORTHO05D005245 2.3e-161 573.2 528 54.0
arahy.Tifrunner.gnm1.ann1.77JVZB Arachis hypogaea HOM05D004385 ORTHO05D005245 3.0e-161 572.8 526 53.4
Psat0s5298g0040 Pisum sativum HOM05D004385 ORTHO05D005245 3.9e-161 572.4 515 54.4
ECA240G2514 Erigeron canadensis HOM05D004385 ORTHO05D005245 6.7e-161 571.6 487 58.9
Cc00_g00450 Coffea canephora HOM05D004385 ORTHO05D005245 1.1e-160 570.9 506 57.9
arahy.Tifrunner.gnm1.ann1.D17V0C Arachis hypogaea HOM05D004385 ORTHO05D005245 1.5e-160 570.5 495 55.8
HanXRQChr03g0067331 Helianthus annuus HOM05D004385 ORTHO05D005245 7.4e-160 568.2 529 53.5
Atru.chr7.972_Atru.chr7.973 Acer truncatum HOM05D004385 ORTHO05D005245 9.6e-160 567.8 500 57.4
PGR142G0778 Punica granatum HOM05D004385 ORTHO05D005245 2.8e-159 566.2 487 57.7
Cpa.g.sc123.32 Carica papaya HOM05D004385 ORTHO05D005245 4.8e-159 565.5 507 55.0
Lalb_Chr19g0138471 Lupinus albus HOM05D004385 ORTHO05D005245 4.8e-159 565.5 490 55.9
MSTRG.10464 Avicennia marina HOM05D004385 ORTHO05D005245 8.2e-159 564.7 490 58.4
MELO3C019214.2 Cucumis melo HOM05D004385 ORTHO05D005245 8.2e-159 564.7 537 53.1
CANSAT80G1931 Cannabis sativa HOM05D004385 ORTHO05D005245 2.4e-158 563.1 500 56.4
Lsat_1_v5_gn_7_57600 Lactuca sativa HOM05D004385 ORTHO05D005245 2.4e-158 563.1 511 56.2
EL10Ac2g03630 Beta vulgaris HOM05D004385 ORTHO05D005245 4.5e-157 558.9 544 52.8
Sed0010902 Sechium edule HOM05D004385 ORTHO05D005245 1.7e-156 557.0 494 54.5
Phvul.011G051300 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 2.9e-156 556.2 494 55.9
Sed0013454 Sechium edule HOM05D004385 ORTHO05D005245 8.4e-156 554.7 514 54.3
HPP92_003174 Vanilla planifolia HOM05D004385 ORTHO05D005245 8.4e-156 554.7 532 53.8
SEGI_12293 Sequoiadendron giganteum HOM05D004385 ORTHO05D005245 7.1e-155 551.6 500 56.0
ClCG06G014070 Citrullus lanatus HOM05D004385 ORTHO05D005245 2.1e-154 550.1 513 53.8
CANSAT80G0643 Cannabis sativa HOM05D004385 ORTHO05D005245 2.7e-154 549.7 493 52.9
CiPaw.15G156000 Carya illinoinensis HOM05D004385 ORTHO05D005245 6.0e-154 548.5 502 55.6
VMungo1127G1209 Vigna mungo HOM05D004385 ORTHO05D005245 1.0e-153 547.7 489 55.6
Sed0018057 Sechium edule HOM05D004385 ORTHO05D005245 3.9e-153 545.8 492 55.1
SGA_v2.0_scaffold21G09624 Striga asiatica HOM05D004385 ORTHO05D005245 3.3e-152 542.7 490 57.1
Sed0010048 Sechium edule HOM05D004385 ORTHO05D005245 9.7e-152 541.2 540 50.9
Phvul.011G051100 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 1.6e-151 540.4 494 55.9
Sabra18G0119900 Salix brachista HOM05D004385 ORTHO05D005245 2.2e-151 540.0 504 54.2
Nitab4.5_0001205g0010 Nicotiana tabacum HOM05D004385 ORTHO05D005245 2.8e-151 539.7 504 55.8
Migut.B00849 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.1e-150 537.7 479 56.6
Peaxi162Scf00320g00411 Petunia axillaris HOM05D004385 ORTHO05D005245 3.4e-149 532.7 526 50.8
Psat0s8631g0040 Pisum sativum HOM05D004385 ORTHO05D005245 3.4e-149 532.7 501 52.9
Nitab4.5_0000413g0040 Nicotiana tabacum HOM05D004385 ORTHO05D005245 2.9e-148 529.6 492 55.5
HanXRQChr03g0067221 Helianthus annuus HOM05D004385 ORTHO05D005245 3.8e-148 529.3 497 53.5
Peaxi162Scf00320g00412 Petunia axillaris HOM05D004385 ORTHO05D005245 1.9e-147 526.9 508 54.3
Potri.018G145600 Populus trichocarpa HOM05D004385 ORTHO05D005245 1.8e-145 520.4 424 59.7
EL10Ac2g03633 Beta vulgaris HOM05D004385 ORTHO05D005245 5.1e-145 518.8 534 51.1
Hund03234 Selenicereus undatus HOM05D004385 ORTHO05D005245 8.8e-145 518.1 500 52.8
ECA240G4307 Erigeron canadensis HOM05D004385 ORTHO05D005245 1.9e-144 516.9 511 52.3
Solyc07g015980.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.2e-143 513.5 490 53.7
TPR.G10229 Trifolium pratense HOM05D004385 ORTHO05D005245 8.2e-143 511.5 598 46.2
HanXRQChr03g0067391 Helianthus annuus HOM05D004385 ORTHO05D005245 1.4e-142 510.8 494 51.6
AUR62028000 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.6e-141 506.5 504 52.4
AUR62020716 Chenopodium quinoa HOM05D004385 ORTHO05D005245 5.9e-141 505.4 510 51.4
CDE06G1948 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 1.7e-140 503.8 454 55.1
AUR62028006 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.5e-139 500.0 522 49.2
Peaxi162Scf00320g00316 Petunia axillaris HOM05D004385 ORTHO05D005245 9.4e-139 498.0 509 50.1
EL10Ac2g03631 Beta vulgaris HOM05D004385 ORTHO05D005245 6.1e-138 495.4 515 49.7
EL10Ac2g03634 Beta vulgaris HOM05D004385 ORTHO05D005245 2.2e-135 486.9 500 50.2
RhsimUnG0051500 Rhododendron simsii HOM05D004385 ORTHO05D005245 2.8e-135 486.5 543 51.4
AagrBONN_evm.TU.Sc2ySwM_117.1864 Anthoceros agrestis HOM05D004385 ORTHO05D005245 3.1e-134 483.0 510 49.8
AUR62027997 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.4e-133 479.6 499 49.7
Mapoly0055s0075 Marchantia polymorpha HOM05D004385 ORTHO05D005245 3.8e-132 476.1 502 49.0
EL10Ac2g03632 Beta vulgaris HOM05D004385 ORTHO05D005245 4.7e-130 469.2 534 48.3
EL10Ac2g04866 Beta vulgaris HOM05D004385 ORTHO05D005245 8.8e-129 464.9 515 48.7
Peaxi162Scf00320g00317 Petunia axillaris HOM05D004385 ORTHO05D005245 1.1e-128 464.5 499 48.1
EL10Ac2g04868 Beta vulgaris HOM05D004385 ORTHO05D005245 1.8e-126 457.2 509 49.1
Migut.L01912 Erythranthe guttata HOM05D004385 ORTHO05D005245 5.3e-126 455.7 407 57.2
Pp3c15_21680 Physcomitrium patens HOM05D004385 ORTHO05D005245 2.0e-125 453.8 496 45.6
Cpa.g.sc123.30 Carica papaya HOM05D004385 ORTHO05D005245 7.7e-125 451.8 489 47.9
Ah.11g043620 Amaranthus hybridus HOM05D004385 ORTHO05D005245 2.2e-124 450.3 486 50.2
Ah.11g043630 Amaranthus hybridus HOM05D004385 ORTHO05D005245 1.1e-123 448.0 491 49.1
Rhsim01G0218300 Rhododendron simsii HOM05D004385 ORTHO05D005245 6.1e-122 442.2 379 61.2
Atru.chr9.1512 Acer truncatum HOM05D004385 ORTHO05D005245 4.8e-119 432.6 499 50.7
Sc06g0001470 Simmondsia chinensis HOM05D004385 ORTHO05D005245 1.1e-118 431.4 398 53.5
Zm00001eb064440 Zea mays HOM05D004385 ORTHO05D005245 1.4e-118 431.0 399 55.4
SGA_v2.0_scaffold21G09621 Striga asiatica HOM05D004385 ORTHO05D005245 3.5e-117 426.4 422 49.8
Cpa.g.sc123.31 Carica papaya HOM05D004385 ORTHO05D005245 1.1e-115 421.4 459 49.0
Rhsim03G0268600 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.5e-115 421.0 505 47.5
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 1.7e-103 380.9 657 35.9
Cfa020737 Carpinus fangiana HOM05D004385 ORTHO05D005245 1.7e-100 370.9 332 55.1
PGSC0003DMG400022081 Solanum tuberosum HOM05D004385 ORTHO05D005245 3.8e-100 369.8 463 44.1
PGSC0003DMG400021019 Solanum tuberosum HOM05D004385 ORTHO05D005245 1.2e-98 364.8 342 54.4
Aqoxy2G04068 Aquilegia oxysepala HOM05D004385 ORTHO05D005245 3.6e-98 363.2 438 46.1
TAR626G1477 Trochodendron aralioides HOM05D004385 ORTHO05D005245 2.3e-97 360.5 288 62.2
CAN.G1581.3 Capsicum annuum HOM05D004385 ORTHO05D005245 6.8e-97 359.0 333 55.3
TPR.G34194 Trifolium pratense HOM05D004385 ORTHO05D005245 9.8e-96 355.1 328 53.0
Haze_18802 Corylus avellana HOM05D004385 ORTHO05D005245 3.7e-95 353.2 399 49.1
unitig_578.g16395 Utricularia gibba HOM05D004385 ORTHO05D005245 4.1e-94 349.7 338 53.6
Solyc07g016050.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 9.5e-91 338.6 345 47.8
Atru.chr9.1488 Acer truncatum HOM05D004385 ORTHO05D005245 1.1e-86 325.1 418 46.9
FAN17G2530 Fragaria x ananassa HOM05D004385 ORTHO05D005245 5.4e-86 322.8 348 49.1
CsaV3_1G004600 Cucumis sativus L. HOM05D004385 ORTHO05D005245 5.1e-84 316.2 284 53.9
CDE06G1657 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 1.1e-81 308.5 457 40.5
Migut.L00572 Erythranthe guttata HOM05D004385 ORTHO05D005245 2.7e-77 293.9 238 56.3
Cre02.g105150 Chlamydomonas reinhardtii HOM05D004385 ORTHO05D005245 6.6e-76 289.3 617 32.9
Migut.L00391 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.1e-73 282.0 233 55.8
Solyc07g016080.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 7.8e-69 265.8 279 47.7
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 5.1e-68 263.1 499 35.9
Solyc07g016030.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.9e-62 244.6 350 38.3
EL10Ac6g13794 Beta vulgaris HOM05D004385 ORTHO05D005245 3.0e-60 237.3 262 50.0
CAN.G1581.2 Capsicum annuum HOM05D004385 ORTHO05D005245 3.2e-54 217.2 142 71.1
FAN22G1494 Fragaria x ananassa HOM05D004385 ORTHO05D005245 2.7e-53 214.2 149 67.8
Psat1g029120 Pisum sativum HOM05D000870 ORTHO05D000715 2.7e-53 214.2 214 51.9
FAN07G2444 Fragaria x ananassa HOM05D004385 ORTHO05D005245 4.6e-53 213.4 149 67.8
Sopen07g016620 Solanum pennellii HOM05D004385 ORTHO05D005245 4.6e-53 213.4 164 62.8
SalBow5G2207 Salvia bowleyana HOM05D004385 ORTHO05D005245 7.9e-53 212.6 140 72.9
MELO3C017386.2 Cucumis melo HOM05D004385 ORTHO05D005245 3.3e-51 207.2 186 54.8
unitig_578.g16396 Utricularia gibba HOM05D004385 ORTHO05D005245 6.0e-45 186.4 124 71.0
AUR62020718 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.3e-44 185.3 188 45.7
Sopen00g013700 Solanum pennellii HOM05D004385 ORTHO05D005245 6.7e-44 183.0 140 60.0
Solyc07g016020.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.9e-38 164.9 145 54.5
AUR62020720 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.5e-38 164.5 174 46.0
AUR62028004 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.3e-36 158.7 131 58.8
Sopen07g016630 Solanum pennellii HOM05D004385 ORTHO05D005245 5.1e-36 156.8 243 41.6
Solyc07g016040.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.5e-35 154.5 113 61.9
AUR62020721 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.2e-29 135.6 92 65.2
AUR62028003 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.1e-29 134.8 205 37.6
Psat0s3373g0120 Pisum sativum HOM05D000870 ORTHO05D005245 2.0e-27 128.3 203 37.4
Solyc07g032590.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 9.7e-27 125.9 141 51.8
PGSC0003DMG400007349 Solanum tuberosum HOM05D004385 ORTHO05D005245 1.8e-20 105.1 76 57.9
AUR62027998 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.1e-19 102.4 87 51.7
GSVIVG01026776001 Vitis vinifera HOM05D004385 ORTHO05D005245 2.6e-11 74.7 66 47.0
Medtr5g096240 Medicago truncatula HOM05D004385 ORTHO05D005245 7.7e-08 63.2 74 43.2
Oeu000968.1 Olea europaea HOM05D004385 ORTHO05D005245 1.0e-07 62.8 53 62.3
Medtr4g117010 Medicago truncatula HOM05D004385 ORTHO05D005245 1.9e-06 58.5 74 43.2


User provided reference genes

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