Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1147G004 Amborella trichopoda HOM05D005839 ORTHO05D005686 0.0e+00 2194.1 1208 100.0
CiPaw.01G113800 Carya illinoinensis HOM05D005839 ORTHO05D005686 4.8e-52 211.1 1271 26.9
QL06p027171 Quercus lobata HOM05D005839 ORTHO05D005686 3.5e-50 204.9 1237 26.7
Actinidia28516 Actinidia chinensis HOM05D005839 ORTHO05D005686 1.0e-46 193.4 1185 26.2
Dinv32166 Davidia involucrata HOM05D005839 ORTHO05D005686 3.0e-46 191.8 414 39.4
Ciclev10004236m.g Citrus clementina HOM05D005839 ORTHO05D005686 2.2e-44 185.7 377 38.5
TAR636G1565 Trochodendron aralioides HOM05D005839 ORTHO05D005686 1.8e-43 182.6 1237 26.4
Haze_11680 Corylus avellana HOM05D005839 ORTHO05D005686 5.9e-42 177.6 1250 26.2
Hma1.2p1_1457F.1_g284680 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 7.7e-42 177.2 227 48.9
Actinidia35832 Actinidia chinensis HOM05D005839 ORTHO05D005686 1.3e-41 176.4 421 37.1
TAR636G0994 Trochodendron aralioides HOM05D005839 ORTHO05D005686 2.9e-41 175.3 1220 26.5
Prupe.1G170500 Prunus persica HOM05D005839 ORTHO05D005686 3.6e-39 168.3 1206 26.4
Duzib151G0277 Durio zibethinus HOM05D005839 ORTHO05D005686 1.0e-38 166.8 384 36.2
Potri.014G146200 Populus trichocarpa HOM05D005839 ORTHO05D005686 1.8e-38 166.0 1292 26.5
Manes.05G199100 Manihot esculenta HOM05D005839 ORTHO05D005686 2.3e-38 165.6 1263 25.7
Glyma.05G150200 Glycine max HOM05D005839 ORTHO05D005686 8.8e-38 163.7 1231 26.5
Hma1.2p1_0984F.1_g244280 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 2.6e-37 162.2 232 46.6
TAR365G0636 Trochodendron aralioides HOM05D005839 ORTHO05D005686 5.7e-37 161.0 477 34.4
Cpa.g.sc157.17 Carica papaya HOM05D005839 ORTHO05D005686 2.4e-35 155.6 435 37.7
arahy.Tifrunner.gnm1.ann1.3YD71H Arachis hypogaea HOM05D005839 ORTHO05D005686 3.1e-35 155.2 1246 25.0
Peaxi162Scf00286g00911 Petunia axillaris HOM05D005839 ORTHO05D005686 4.1e-35 154.8 1213 25.0
Potri.002G235900 Populus trichocarpa HOM05D005839 ORTHO05D005686 1.6e-34 152.9 1240 26.5
CANSAT78G1593 Cannabis sativa HOM05D005839 ORTHO05D005686 2.0e-34 152.5 235 46.4
Eucgr.H02631 Eucalyptus grandis HOM05D005839 ORTHO05D005686 2.7e-34 152.1 1232 24.8
Sabra14G0109900 Salix brachista HOM05D005839 ORTHO05D005686 2.7e-34 152.1 1284 24.7
Thecc.04G191800 Theobroma cacao HOM05D005839 ORTHO05D005686 4.5e-34 151.4 1226 24.5
FvH4_4g12870 Fragaria vesca HOM05D005839 ORTHO05D005686 7.7e-34 150.6 1275 24.4
Gohir.A10G130200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 8.6e-33 147.1 363 35.0
PGR083G0592 Punica granatum HOM05D005839 ORTHO05D005686 8.6e-33 147.1 1232 25.6
Gorai.011G150900 Gossypium raimondii HOM05D005839 ORTHO05D005686 1.5e-32 146.4 363 35.3
Cc03_g09160 Coffea canephora HOM05D005839 ORTHO05D005686 1.2e-31 143.3 1294 23.8
Gohir.D10G136100 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.2e-31 143.3 385 33.5
arahy.Tifrunner.gnm1.ann1.SAUI5N Arachis hypogaea HOM05D005839 ORTHO05D005686 1.6e-31 142.9 1253 23.5
FAN12G3285 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.6e-31 142.9 1301 24.8
DCAR_005282 Daucus carota HOM05D005839 ORTHO05D005686 4.7e-31 141.4 334 34.1
ECA233G5455 Erigeron canadensis HOM05D005839 ORTHO05D005686 4.7e-31 141.4 217 45.2
CsaV3_3G015820 Cucumis sativus L. HOM05D005839 ORTHO05D005686 1.0e-30 140.2 1228 25.2
FAN22G0032 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.4e-30 139.8 414 32.9
Duzib268G0552 Durio zibethinus HOM05D005839 ORTHO05D005686 1.8e-30 139.4 1261 24.1
HanXRQChr07g0186001 Helianthus annuus HOM05D005839 ORTHO05D005686 1.8e-30 139.4 210 45.2
VMungo0251G1575 Vigna mungo HOM05D005839 ORTHO05D005686 5.2e-30 137.9 1224 26.2
Phvul.003G048600 Phaseolus vulgaris HOM05D005839 ORTHO05D005686 6.8e-30 137.5 1242 25.0
PGSC0003DMG400021878 Solanum tuberosum HOM05D005839 ORTHO05D005686 8.9e-30 137.1 272 37.9
Atru.chr3.1775 Acer truncatum HOM05D005839 ORTHO05D005686 1.5e-29 136.3 169 50.9
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 1.5e-29 136.3 212 42.0
CAN.G1684.4 Capsicum annuum HOM05D005839 ORTHO05D005686 9.8e-29 133.7 1180 23.8
ClCG05G007080 Citrullus lanatus HOM05D005839 ORTHO05D005686 9.8e-29 133.7 1245 23.9
FAN07G0261 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.7e-28 132.9 428 30.6
CSS0003065 Camellia sinensis var. sinensis HOM05D005839 ORTHO05D005686 2.8e-28 132.1 1134 24.4
TWI53G2144 Tripterygium wilfordii HOM05D005839 ORTHO05D005686 2.8e-28 132.1 1178 24.4
Lj3A356G9 Lonicera japonica HOM05D005839 ORTHO05D005686 3.7e-28 131.7 247 41.3
PGSC0003DMG401021870 Solanum tuberosum HOM05D005839 ORTHO05D005686 3.7e-28 131.7 1204 23.1
MD04G1021500 Malus domestica HOM05D005839 ORTHO05D005686 6.3e-28 131.0 1205 24.7
Hund24442 Selenicereus undatus HOM05D005839 ORTHO05D005686 6.3e-28 131.0 281 37.4
Ca_18007_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 1.4e-27 129.8 377 34.2
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.4e-27 129.8 1321 24.2
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 1.4e-27 129.8 278 35.6
MELO3C006781.2 Cucumis melo HOM05D005839 ORTHO05D005686 2.4e-27 129.0 1234 24.1
RcHm_v2.0_Chr4g0412531 Rosa chinensis HOM05D005839 ORTHO05D005686 2.4e-27 129.0 1335 23.7
Sed0018641 Sechium edule HOM05D005839 ORTHO05D005686 4.5e-26 124.8 1207 23.6
Gohir.D09G201300 Gossypium hirsutum HOM05D005839 ORTHO05D005686 5.9e-26 124.4 436 32.6
arahy.Tifrunner.gnm1.ann1.SDG4EV Arachis hypogaea HOM05D005839 ORTHO05D005686 1.0e-25 123.6 231 40.3
Psat7g076360 Pisum sativum HOM05D005839 ORTHO05D005686 1.0e-25 123.6 420 32.4
Sopen09g035450 Solanum pennellii HOM05D005839 ORTHO05D005686 1.0e-25 123.6 1216 23.5
Sabra02G0179700 Salix brachista HOM05D005839 ORTHO05D005686 1.3e-25 123.2 1238 23.9
AUR62020882 Chenopodium quinoa HOM05D005839 ORTHO05D005686 1.7e-25 122.9 238 39.5
Glyma.08G107100 Glycine max HOM05D005839 ORTHO05D005686 8.6e-25 120.6 1236 24.8
Solyc09g092550.4 Solanum lycopersicum HOM05D005839 ORTHO05D005686 1.5e-24 119.8 1213 23.3
COL.COLO4_04260 Corchorus olitorius HOM05D005839 ORTHO05D005686 1.9e-24 119.4 1202 25.0
Gorai.006G225000 Gossypium raimondii HOM05D005839 ORTHO05D005686 2.5e-24 119.0 1211 24.7
Lj4g0005413 Lotus japonicus HOM05D005839 ORTHO05D005686 3.3e-24 118.6 1231 24.1
Nitab4.5_0000037g0160 Nicotiana tabacum HOM05D005839 ORTHO05D005686 4.3e-24 118.2 1221 22.9
Gohir.A09G207800 Gossypium hirsutum HOM05D005839 ORTHO05D005686 6.1e-23 114.4 378 33.1
HanXRQChr02g0058441 Helianthus annuus HOM05D005839 ORTHO05D005686 1.0e-22 113.6 243 36.2
Migut.G00951 Erythranthe guttata HOM05D005839 ORTHO05D005686 1.8e-22 112.8 328 33.5
AUR62018535 Chenopodium quinoa HOM05D005839 ORTHO05D005686 2.3e-22 112.5 374 32.1
Sed0009973 Sechium edule HOM05D005839 ORTHO05D005686 2.3e-22 112.5 1215 23.7
Lsat_1_v5_gn_6_58881 Lactuca sativa HOM05D005839 ORTHO05D005686 8.9e-22 110.5 229 37.1
Oeu049072.1 Olea europaea HOM05D005839 ORTHO05D005686 8.9e-22 110.5 1161 23.9
SalBow2G2888 Salvia bowleyana HOM05D005839 ORTHO05D005686 7.5e-21 107.5 1203 22.9
Ah.04g149590 Amaranthus hybridus HOM05D005839 ORTHO05D005686 1.7e-20 106.3 287 34.5
Medtr8g081010 Medicago truncatula HOM05D005839 ORTHO05D005686 2.2e-20 105.9 750 24.1
arahy.Tifrunner.gnm1.ann1.62570H Arachis hypogaea HOM05D005839 ORTHO05D005686 4.9e-20 104.8 226 34.1
SalBow2G2330 Salvia bowleyana HOM05D005839 ORTHO05D005686 4.9e-20 104.8 1203 22.8
MSTRG.9771 Avicennia marina HOM05D005839 ORTHO05D005686 8.3e-20 104.0 383 28.5
Lj6g0025267 Lotus japonicus HOM05D005839 ORTHO05D005686 1.1e-19 103.6 213 33.3
MSTRG.4261 Avicennia marina HOM05D005839 ORTHO05D005686 4.1e-19 101.7 1229 23.7
Gohir.D02G113200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 4.1e-19 101.7 853 25.4
arahy.Tifrunner.gnm1.ann1.H8QNW8 Arachis hypogaea HOM05D005839 ORTHO05D005686 1.6e-18 99.8 226 33.6
Gorai.005G128100 Gossypium raimondii HOM05D005839 ORTHO05D005686 4.6e-18 98.2 854 25.3
EL10Ac3g07436 Beta vulgaris HOM05D005839 ORTHO05D005686 1.5e-16 93.2 268 35.1
arahy.Tifrunner.gnm1.ann1.98ICAR Arachis hypogaea HOM05D000340 ORTHO05D000821 6.2e-15 87.8 119 44.5
Nn8g41260 Nelumbo nucifera HOM05D005839 ORTHO05D005686 6.2e-15 87.8 328 30.2
Ca_16430_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 1.1e-14 87.0 146 39.0
GSVIVG01031570001 Vitis vinifera HOM05D005839 ORTHO05D005686 1.5e-13 83.2 1170 23.2
SEGI_24376 Sequoiadendron giganteum HOM05D005839 ORTHO05D005686 2.0e-13 82.8 61 55.7
ECA233G2442 Erigeron canadensis HOM05D005839 ORTHO05D005686 2.2e-12 79.3 217 35.0
arahy.Tifrunner.gnm1.ann1.52QBHW Arachis hypogaea HOM05D005839 ORTHO05D005686 4.9e-12 78.2 124 36.3
arahy.Tifrunner.gnm1.ann1.Q2NVSC Arachis hypogaea HOM05D005839 ORTHO05D000011 4.9e-12 78.2 117 41.9
SMO153G0001 Selaginella moellendorffii HOM05D005839 ORTHO05D005686 1.4e-11 76.6 79 44.3
C03p76940 Brassica napus HOM05D010750 ORTHO05D005686 2.4e-11 75.9 135 34.8
Mapoly0008s0012 Marchantia polymorpha HOM05D005839 ORTHO05D005686 5.4e-11 74.7 35 80.0
Sc13g0000540 Simmondsia chinensis HOM05D005839 ORTHO05D005686 7.0e-11 74.3 948 23.6
Atru.chr3.1776 Acer truncatum HOM05D005839 ORTHO05D005686 9.2e-11 73.9 319 26.6
Duzib151G0492 Durio zibethinus HOM05D005839 ORTHO05D005686 9.2e-11 73.9 371 25.9
Lalb_Chr07g0186981 Lupinus albus HOM05D005839 ORTHO05D005686 9.2e-11 73.9 200 34.5
AagrBONN_evm.TU.Sc2ySwM_344.2400 Anthoceros agrestis HOM05D010750 ORTHO05D005686 1.2e-10 73.6 35 74.3
AL7G42170 Arabidopsis lyrata HOM05D010750 ORTHO05D005686 1.6e-10 73.2 133 36.1
BraA08t34382Z Brassica rapa HOM05D010750 ORTHO05D005686 2.7e-10 72.4 129 34.9
BcaC01g00210 Brassica carinata HOM05D010750 ORTHO05D005686 6.0e-10 71.2 135 33.3
BolC3t19949H Brassica oleracea HOM05D010750 ORTHO05D005686 6.0e-10 71.2 135 33.3
Lsat_1_v5_gn_2_47881 Lactuca sativa HOM05D005839 ORTHO05D005686 7.8e-10 70.9 232 32.8
Lj3A375G30 Lonicera japonica HOM05D005839 ORTHO05D005686 1.3e-09 70.1 1028 21.7
THA.LOC104808672 Tarenaya hassleriana HOM05D010750 ORTHO05D005686 1.3e-09 70.1 224 27.2
FvH4_1g13820 Fragaria vesca HOM05D005839 ORTHO05D005686 1.7e-09 69.7 69 46.4
Glyma.18G003300 Glycine max HOM05D005839 ORTHO05D005686 2.3e-09 69.3 143 36.4
arahy.Tifrunner.gnm1.ann1.CIA2YT Arachis hypogaea HOM05D005839 ORTHO05D005686 3.0e-09 68.9 68 47.1
Mapoly0059s0004 Marchantia polymorpha HOM05D005839 ORTHO05D005686 3.0e-09 68.9 74 43.2
CDE05G0606 Ceratophyllum demersum HOM05D062397 ORTHO05D043856 8.6e-09 67.4 177 34.5
AT4G14200 Arabidopsis thaliana HOM05D010750 ORTHO05D005686 1.6e-07 63.2 211 29.9
Os08g0525700 Oryza sativa ssp. japonica HOM05D020277 ORTHO05D023046 1.6e-07 63.2 160 32.5
BcaNung05575 Brassica carinata HOM05D010750 ORTHO05D005686 2.1e-07 62.8 140 33.6
Gohir.A03G095700 Gossypium hirsutum HOM05D005839 ORTHO05D005686 2.8e-07 62.4 836 23.6
Hund19024 Selenicereus undatus HOM05D005839 ORTHO05D005686 2.8e-07 62.4 471 25.3
Mapoly0034s0131 Marchantia polymorpha HOM05D005839 ORTHO05D005686 3.6e-07 62.0 151 36.4
Cpa.g.sc157.18 Carica papaya HOM05D005839 ORTHO05D005686 2.3e-06 59.3 156 32.1
Os09g0502100 Oryza sativa ssp. japonica HOM05D020277 ORTHO05D023046 2.3e-06 59.3 114 32.5
Aqoxy2G04047 Aquilegia oxysepala HOM05D005839 ORTHO05D005686 3.1e-06 58.9 1199 22.3
Lalb_Chr07g0186961 Lupinus albus HOM05D005839 ORTHO05D005686 3.1e-06 58.9 43 58.1


User provided reference genes

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