Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1145G024 Amborella trichopoda HOM05D005458 ORTHO05D005672 4.0e-85 318.2 172 100.0
Lalb_Chr01g0022281 Lupinus albus HOM05D005458 ORTHO05D005672 1.7e-14 83.6 59 83.1
Prupe.1G008500 Prunus persica HOM05D005458 ORTHO05D005672 1.7e-14 83.6 61 85.2
Lsat_1_v5_gn_6_60280 Lactuca sativa HOM05D005458 ORTHO05D005672 6.3e-14 81.6 62 79.0
TWI75G0430 Tripterygium wilfordii HOM05D005458 ORTHO05D005672 8.2e-14 81.3 58 84.5
ECA248G3568 Erigeron canadensis HOM05D000609 ORTHO05D000462 1.1e-13 80.9 78 65.4
Potri.017G055501 Populus trichocarpa HOM05D005458 ORTHO05D005672 1.8e-13 80.1 58 84.5
Ciclev10006390m.g Citrus clementina HOM05D005458 ORTHO05D005672 3.1e-13 79.3 57 80.7
CANSAT11G1273 Cannabis sativa HOM05D005458 ORTHO05D005672 4.1e-13 79.0 61 75.4
CsaV3_2G011550 Cucumis sativus L. HOM05D005458 ORTHO05D005672 4.1e-13 79.0 57 84.2
Zm00001eb287790 Zea mays HOM05D005458 ORTHO05D005672 6.9e-13 78.2 64 71.9
Atru.chr4.1700 Acer truncatum HOM05D005458 ORTHO05D005672 9.1e-13 77.8 59 79.7
ClCG06G007830 Citrullus lanatus HOM05D005458 ORTHO05D005672 9.1e-13 77.8 56 85.7
Lalb_Chr19g0125681 Lupinus albus HOM05D005458 ORTHO05D005672 1.2e-12 77.4 58 79.3
Peaxi162Scf00047g00517 Petunia axillaris HOM05D005458 ORTHO05D005672 2.0e-12 76.6 59 79.7
Manes.15G054000 Manihot esculenta HOM05D005458 ORTHO05D005672 2.6e-12 76.3 66 74.2
Os05g0407100 Oryza sativa ssp. japonica HOM05D005458 ORTHO05D005672 4.5e-12 75.5 54 79.6
GSVIVG01021052001 Vitis vinifera HOM05D005458 ORTHO05D005672 4.5e-12 75.5 66 72.7
Ca_17417_v3 Cicer arietinum L. HOM05D005458 ORTHO05D005672 7.7e-12 74.7 64 75.0
Pp3c4_17970 Physcomitrium patens HOM05D005458 ORTHO05D005672 7.7e-12 74.7 56 78.6
Glyma.08G351700 Glycine max HOM05D005458 ORTHO05D005672 1.0e-11 74.3 62 74.2
Psat3g147360 Pisum sativum HOM05D005458 ORTHO05D005672 1.0e-11 74.3 64 75.0
Hund16751 Selenicereus undatus HOM05D005458 ORTHO05D005672 1.3e-11 73.9 59 78.0
CiPaw.01G120800 Carya illinoinensis HOM05D005458 ORTHO05D005672 1.7e-11 73.6 63 76.2
Phvul.008G127837 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 1.7e-11 73.6 62 74.2
Pp3c12_4180 Physcomitrium patens HOM05D005458 ORTHO05D005672 1.7e-11 73.6 56 78.6
FvH4_4g16450 Fragaria vesca HOM05D005458 ORTHO05D005672 2.2e-11 73.2 59 72.9
Rhsim02G0057300 Rhododendron simsii HOM05D005458 ORTHO05D005672 2.9e-11 72.8 82 54.9
Aqoxy2G03857 Aquilegia oxysepala HOM05D005458 ORTHO05D005672 5.0e-11 72.0 62 74.2
CAN.G1635.9 Capsicum annuum HOM05D005458 ORTHO05D005672 6.5e-11 71.6 65 75.4
Potri.014G056600 Populus trichocarpa HOM05D005458 ORTHO05D005672 6.5e-11 71.6 69 69.6
Thecc.01G224300 Theobroma cacao HOM05D005458 ORTHO05D005672 6.5e-11 71.6 58 79.3
Sc05g0002070 Simmondsia chinensis HOM05D005458 ORTHO05D005672 8.5e-11 71.2 61 77.0
PGSC0003DMG400031295 Solanum tuberosum HOM05D005458 ORTHO05D005672 8.5e-11 71.2 58 79.3
MD04G1009100 Malus domestica HOM05D005458 ORTHO05D005672 1.1e-10 70.9 51 80.4
PSO017G2416 Papaver somniferum HOM05D005458 ORTHO05D005672 1.1e-10 70.9 58 75.9
PSO063G0044 Papaver somniferum HOM05D005458 ORTHO05D005672 1.1e-10 70.9 58 75.9
Nn1g07886 Nelumbo nucifera HOM05D005458 ORTHO05D005672 1.4e-10 70.5 59 74.6
Cpa.g.sc2154.1 Carica papaya HOM05D005458 ORTHO05D005672 1.9e-10 70.1 54 79.6
GSVIVG01003386001 Vitis vinifera HOM05D005458 ORTHO05D005672 3.2e-10 69.3 72 62.5
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 4.2e-10 68.9 77 59.7
MELO3C020447.2 Cucumis melo HOM05D005458 ORTHO05D005672 5.5e-10 68.6 48 87.5
Pp3c13_10560 Physcomitrium patens HOM05D005458 ORTHO05D005672 5.5e-10 68.6 52 78.8
Thhalv10026728m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 7.2e-10 68.2 58 74.1
Carub.0007s2961 Capsella rubella HOM05D005458 ORTHO05D005672 9.4e-10 67.8 64 67.2
FAN07G0843 Fragaria x ananassa HOM05D005458 ORTHO05D005672 9.4e-10 67.8 56 71.4
Haze_24813 Corylus avellana HOM05D005458 ORTHO05D005672 1.2e-09 67.4 62 67.7
Gorai.004G226200 Gossypium raimondii HOM05D005458 ORTHO05D005672 1.2e-09 67.4 64 70.3
Lj1g0002931 Lotus japonicus HOM05D005458 ORTHO05D005672 1.2e-09 67.4 63 66.7
TPR.G14533 Trifolium pratense HOM05D005458 ORTHO05D005672 1.6e-09 67.0 57 75.4
Medtr7g056410 Medicago truncatula HOM05D005458 ORTHO05D005672 2.1e-09 66.6 60 73.3
EL10Ac3g07484 Beta vulgaris HOM05D005458 ORTHO05D005672 2.7e-09 66.2 51 78.4
Aa31LG9G4840 Aethionema arabicum HOM05D002547 ORTHO05D002649 3.6e-09 65.9 58 72.4
Sc19g0007160 Simmondsia chinensis HOM05D005458 ORTHO05D005672 3.6e-09 65.9 63 66.7
Cc03_g07880 Coffea canephora HOM05D005458 ORTHO05D005672 4.7e-09 65.5 50 80.0
Eucgr.H00051 Eucalyptus grandis HOM05D005458 ORTHO05D005672 4.7e-09 65.5 60 70.0
Hund27148 Selenicereus undatus HOM05D005458 ORTHO05D005672 8.0e-09 64.7 59 72.9
Hma1.2p1_1407F.1_g281420 Hydrangea macrophylla HOM05D000434 ORTHO05D005672 1.0e-08 64.3 60 66.7
Migut.D02491 Erythranthe guttata HOM05D005458 ORTHO05D005672 1.8e-08 63.5 57 73.7
Phvul.010G019701 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 1.8e-08 63.5 60 70.0
Pp3c12_4160 Physcomitrium patens HOM05D005458 ORTHO05D005672 2.3e-08 63.2 52 71.2
Prupe.8G201600 Prunus persica HOM05D005458 ORTHO05D005672 5.2e-08 62.0 61 68.9
Manes.12G045600 Manihot esculenta HOM05D005458 ORTHO05D005672 6.7e-08 61.6 53 75.5
AT3G24100 Arabidopsis thaliana HOM05D005458 ORTHO05D005672 8.8e-08 61.2 47 80.9
AUR62001097 Chenopodium quinoa HOM05D001937 ORTHO05D007024 1.1e-07 60.8 54 74.1
Gohir.A07G157232 Gossypium hirsutum HOM05D005458 ORTHO05D005672 1.1e-07 60.8 48 79.2
Mapoly0075s0018 Marchantia polymorpha HOM05D005458 ORTHO05D005672 1.1e-07 60.8 54 70.4
Peaxi162Scf00594g00523 Petunia axillaris HOM05D005458 ORTHO05D005672 1.5e-07 60.5 57 70.2
Thhalv10002785m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 2.0e-07 60.1 46 80.4
Os11g0425600 Oryza sativa ssp. japonica HOM05D005458 ORTHO05D005672 2.0e-07 60.1 40 80.0
Potri.001G315400 Populus trichocarpa HOM05D005458 ORTHO05D005672 2.6e-07 59.7 46 82.6
VMungo1383G3675 Vigna mungo HOM05D005458 ORTHO05D000001 2.6e-07 59.7 62 64.5
Gohir.D07G163401 Gossypium hirsutum HOM05D005458 ORTHO05D005672 3.3e-07 59.3 47 78.7
Gorai.001G187200 Gossypium raimondii HOM05D005458 ORTHO05D005672 3.3e-07 59.3 47 78.7
unitig_736.g22466 Utricularia gibba HOM05D005458 ORTHO05D005672 3.3e-07 59.3 53 73.6
Carub.0003s2440 Capsella rubella HOM05D005458 ORTHO05D005672 4.4e-07 58.9 46 80.4
arahy.Tifrunner.gnm1.ann1.XWTR79 Arachis hypogaea HOM05D005458 ORTHO05D005672 7.4e-07 58.2 44 81.8
Dinv27235 Davidia involucrata HOM05D005458 ORTHO05D005672 7.4e-07 58.2 55 69.1
PGR142G1434 Punica granatum HOM05D005458 ORTHO05D005672 7.4e-07 58.2 45 80.0
A04p08570 Brassica napus HOM05D005458 ORTHO05D005672 9.7e-07 57.8 47 76.6
BolC4t25811H Brassica oleracea HOM05D005458 ORTHO05D005672 9.7e-07 57.8 47 76.6
BraA04t16551Z Brassica rapa HOM05D005458 ORTHO05D005672 9.7e-07 57.8 47 76.6
AL3G39170 Arabidopsis lyrata HOM05D005458 ORTHO05D005672 1.3e-06 57.4 45 80.0
CARHR100100 Cardamine hirsuta HOM05D005458 ORTHO05D005672 1.3e-06 57.4 45 80.0
Cpa.g.sc8.142 Carica papaya HOM05D005458 ORTHO05D005672 1.3e-06 57.4 50 74.0
Duzib138G0965 Durio zibethinus HOM05D005458 ORTHO05D005672 1.3e-06 57.4 46 76.1
Duzib211G0320 Durio zibethinus HOM05D005458 ORTHO05D005672 1.3e-06 57.4 46 80.4
Gohir.D07G207100 Gossypium hirsutum HOM05D005458 ORTHO05D005672 1.3e-06 57.4 47 78.7
Gorai.001G233500 Gossypium raimondii HOM05D005458 ORTHO05D005672 1.3e-06 57.4 47 78.7
VMungo0331G1336 Vigna mungo HOM05D005458 ORTHO05D005672 1.3e-06 57.4 65 60.0
Duzib133G0368 Durio zibethinus HOM05D005458 ORTHO05D005672 1.7e-06 57.0 46 80.4
Glyma.18G164200 Glycine max HOM05D005458 ORTHO05D005672 1.7e-06 57.0 62 62.9
EL10Ac1g00186 Beta vulgaris HOM05D005458 ORTHO05D005672 2.2e-06 56.6 43 81.4
FAN15G3619 Fragaria x ananassa HOM05D005458 ORTHO05D005672 2.2e-06 56.6 63 65.1
Migut.N00389 Erythranthe guttata HOM05D005458 ORTHO05D005672 2.8e-06 56.2 35 85.7
Gohir.A08G195125 Gossypium hirsutum HOM05D005458 ORTHO05D005672 2.8e-06 56.2 60 65.0
AT4G13615 Arabidopsis thaliana HOM05D005458 ORTHO05D005672 3.7e-06 55.8 46 76.1
Sed0009755 Sechium edule HOM05D005458 ORTHO05D005672 3.7e-06 55.8 61 63.9
Zm00001eb356280 Zea mays HOM05D005458 ORTHO05D005672 3.7e-06 55.8 40 75.0
Lalb_Chr07g0194291 Lupinus albus HOM05D005458 ORTHO05D005672 4.8e-06 55.5 59 61.0
THA.LOC104804811 Tarenaya hassleriana HOM05D005458 ORTHO05D005672 4.8e-06 55.5 58 65.5
CARHR219300 Cardamine hirsuta HOM05D005458 ORTHO05D005672 6.3e-06 55.1 46 73.9
Manes.03G147401 Manihot esculenta HOM05D005458 ORTHO05D005672 6.3e-06 55.1 56 66.1
Thhalv10026730m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 8.2e-06 54.7 45 75.6
Os01g0332700 Oryza sativa ssp. japonica HOM05D005458 ORTHO05D005672 8.2e-06 54.7 45 73.3


User provided reference genes

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