Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1145G007 Amborella trichopoda HOM05D000081 ORTHO05D017261 1.1e-96 356.7 183 100.0
TAR627G0177 Trochodendron aralioides HOM05D000081 ORTHO05D000036 1.0e-17 94.4 157 43.9
TAR629G1661 Trochodendron aralioides HOM05D000081 ORTHO05D000036 2.9e-17 92.8 166 45.8
MBI15_g36009_MAGBIO Magnolia biondii HOM05D000081 ORTHO05D000036 2.1e-15 86.7 166 44.0
Nn1g09752 Nelumbo nucifera HOM05D000081 ORTHO05D000036 3.5e-15 85.9 153 47.1
TAR362G1075 Trochodendron aralioides HOM05D000081 ORTHO05D000036 3.5e-15 85.9 141 46.1
MBI11_g39357_MAGBIO Magnolia biondii HOM05D000081 ORTHO05D017261 1.9e-13 80.1 62 69.4
vmacro09795 Vaccinium macrocarpon HOM05D000081 ORTHO05D000036 4.3e-13 79.0 139 43.9
Eucgr.F01981 Eucalyptus grandis HOM05D000081 ORTHO05D000036 5.7e-13 78.6 177 39.5
Potri.001G472800 Populus trichocarpa HOM05D000081 ORTHO05D000036 5.7e-13 78.6 158 41.1
Potri.011G169300 Populus trichocarpa HOM05D000081 ORTHO05D000036 7.4e-13 78.2 158 39.9
Nn1g07617 Nelumbo nucifera HOM05D000081 ORTHO05D000036 1.3e-12 77.4 170 39.4
Manes.05G203900 Manihot esculenta HOM05D000081 ORTHO05D000036 2.2e-12 76.6 164 41.5
MBI14_g10258_MAGBIO Magnolia biondii HOM05D000081 ORTHO05D000036 2.8e-12 76.3 164 40.9
Ca_14126_v3 Cicer arietinum L. HOM05D000081 ORTHO05D000036 8.2e-12 74.7 173 38.7
PSO063G2392 Papaver somniferum HOM05D000081 ORTHO05D000036 8.2e-12 74.7 205 35.1
Sabra11G0137500 Salix brachista HOM05D000081 ORTHO05D000036 8.2e-12 74.7 158 38.6
TAR626G1921 Trochodendron aralioides HOM05D000081 ORTHO05D000036 8.2e-12 74.7 161 41.0
Lj8C184T7 Lonicera japonica HOM05D000081 ORTHO05D000036 1.1e-11 74.3 148 40.5
Lalb_Chr15g0079871 Lupinus albus HOM05D000081 ORTHO05D000036 1.1e-11 74.3 185 39.5
Cpa.g.sc12.58 Carica papaya HOM05D000081 ORTHO05D000036 1.4e-11 73.9 154 39.6
Psat5g231120 Pisum sativum HOM05D000081 ORTHO05D000036 1.8e-11 73.6 173 38.2
RcHm_v2.0_Chr5g0074411 Rosa chinensis HOM05D000081 ORTHO05D000036 1.8e-11 73.6 171 39.8
MD03G1044400 Malus domestica HOM05D000081 ORTHO05D000036 2.4e-11 73.2 162 38.3
FvH4_3g41430 Fragaria vesca HOM05D000081 ORTHO05D000036 3.1e-11 72.8 183 38.8
FAN10G3619 Fragaria x ananassa HOM05D004776 ORTHO05D005777 3.1e-11 72.8 164 39.6
FAN11G0082 Fragaria x ananassa HOM05D000081 ORTHO05D000036 3.1e-11 72.8 183 38.8
FAN25G3806 Fragaria x ananassa HOM05D000081 ORTHO05D000036 3.1e-11 72.8 183 38.8
Lj1C902G5 Lonicera japonica HOM05D000081 ORTHO05D000036 4.1e-11 72.4 146 39.0
Manes.01G007600 Manihot esculenta HOM05D000081 ORTHO05D000036 4.1e-11 72.4 161 40.4
Medtr3g009470 Medicago truncatula HOM05D000081 ORTHO05D000036 4.1e-11 72.4 173 37.6
Lalb_Chr04g0259421 Lupinus albus HOM05D000081 ORTHO05D000036 6.9e-11 71.6 182 39.0
TWI38G0942 Tripterygium wilfordii HOM05D000081 ORTHO05D000036 6.9e-11 71.6 160 40.0
CANSAT11G1669 Cannabis sativa HOM05D000081 ORTHO05D000036 9.0e-11 71.2 180 40.0
FAN10G0221 Fragaria x ananassa HOM05D000190 ORTHO05D000113 9.0e-11 71.2 154 39.6
PSO782G0489 Papaver somniferum HOM05D000081 ORTHO05D000036 9.0e-11 71.2 205 34.1
Rhsim04G0007000 Rhododendron simsii HOM05D000081 ORTHO05D000036 9.0e-11 71.2 139 40.3
Sabra16G0321000 Salix brachista HOM05D000081 ORTHO05D000036 9.0e-11 71.2 158 39.2
Thecc.05G199200 Theobroma cacao HOM05D000081 ORTHO05D000036 9.0e-11 71.2 69 56.5
Lalb_Chr18g0048721 Lupinus albus HOM05D000081 ORTHO05D000036 1.2e-10 70.9 182 37.4
Sopen07g034400 Solanum pennellii HOM05D000081 ORTHO05D000036 1.2e-10 70.9 147 39.5
FAN16G2882 Fragaria x ananassa HOM05D000081 ORTHO05D000036 1.5e-10 70.5 177 40.1
Solyc07g066220.3 Solanum lycopersicum HOM05D000081 ORTHO05D000036 1.5e-10 70.5 156 37.2
FAN03G2346 Fragaria x ananassa HOM05D000081 ORTHO05D000036 2.0e-10 70.1 161 38.5
MBI11_g12228_MAGBIO Magnolia biondii HOM05D000081 ORTHO05D000036 2.0e-10 70.1 147 38.8
PGSC0003DMG400022143 Solanum tuberosum HOM05D000081 ORTHO05D000036 2.0e-10 70.1 143 39.2
Aqoxy2G04012 Aquilegia oxysepala HOM05D000081 ORTHO05D000036 2.6e-10 69.7 153 43.8
CSS0041811 Camellia sinensis var. sinensis HOM05D000081 ORTHO05D000036 2.6e-10 69.7 150 40.7
MELO3C014066.2 Cucumis melo HOM05D000081 ORTHO05D000036 2.6e-10 69.7 166 37.3
Glyma.04G115500 Glycine max HOM05D000081 ORTHO05D000036 2.6e-10 69.7 161 38.5
PSO017G6271 Papaver somniferum HOM05D000081 ORTHO05D000036 2.6e-10 69.7 60 65.0
CsaV3_3G003840 Cucumis sativus L. HOM05D000081 ORTHO05D000036 3.4e-10 69.3 153 39.9
TWI39G1194 Tripterygium wilfordii HOM05D000081 ORTHO05D000036 3.4e-10 69.3 157 40.1
PSO675G4386 Papaver somniferum HOM05D000081 ORTHO05D000036 5.9e-10 68.6 83 54.2
Nitab4.5_0000294g0180 Nicotiana tabacum HOM05D000081 ORTHO05D000036 7.7e-10 68.2 139 39.6
FAN21G1723 Fragaria x ananassa HOM05D000081 ORTHO05D000036 1.0e-09 67.8 183 38.3
Peaxi162Scf00232g00810 Petunia axillaris HOM05D000081 ORTHO05D000036 1.0e-09 67.8 144 38.2
QL08p000375 Quercus lobata HOM05D000081 ORTHO05D000036 1.0e-09 67.8 183 37.7
Actinidia30343 Actinidia chinensis HOM05D000081 ORTHO05D000036 1.7e-09 67.0 167 39.5
Gohir.A13G154100 Gossypium hirsutum HOM05D000081 ORTHO05D000036 1.7e-09 67.0 81 53.1
Prupe.6G036300 Prunus persica HOM05D000081 ORTHO05D000036 1.7e-09 67.0 181 37.6
Sed0018136 Sechium edule HOM05D000081 ORTHO05D000036 1.7e-09 67.0 161 35.4
Thecc.07G000700 Theobroma cacao HOM05D000081 ORTHO05D000036 1.7e-09 67.0 162 37.0
Gohir.D08G036600 Gossypium hirsutum HOM05D000081 ORTHO05D000036 2.2e-09 66.6 154 36.4
Nitab4.5_0001732g0010 Nicotiana tabacum HOM05D000081 ORTHO05D000036 2.2e-09 66.6 153 35.3
arahy.Tifrunner.gnm1.ann1.691ACA Arachis hypogaea HOM05D000081 ORTHO05D000036 2.9e-09 66.2 173 37.0
arahy.Tifrunner.gnm1.ann1.SLD8K7 Arachis hypogaea HOM05D000081 ORTHO05D000036 2.9e-09 66.2 173 37.0
TPR.G16686 Trifolium pratense HOM05D000081 ORTHO05D000036 2.9e-09 66.2 173 37.6
CAN.G623.79 Capsicum annuum HOM05D000081 ORTHO05D000036 3.8e-09 65.9 152 39.5
Ca_07987_v3 Cicer arietinum L. HOM05D000081 ORTHO05D000036 3.8e-09 65.9 81 50.6
HanXRQChr08g0232861 Helianthus annuus HOM05D000081 ORTHO05D000036 3.8e-09 65.9 137 39.4
Potri.013G086000 Populus trichocarpa HOM05D000081 ORTHO05D000036 3.8e-09 65.9 82 51.2
Dinv42531 Davidia involucrata HOM05D000081 ORTHO05D000036 5.0e-09 65.5 148 38.5
Duzib128G1403 Durio zibethinus HOM05D000081 ORTHO05D000036 5.0e-09 65.5 79 51.9
Gohir.A08G026100 Gossypium hirsutum HOM05D000081 ORTHO05D000036 5.0e-09 65.5 154 35.7
Sed0001427 Sechium edule HOM05D000081 ORTHO05D000036 5.0e-09 65.5 159 35.8
GSVIVG01014854001 Vitis vinifera HOM05D000081 ORTHO05D000036 5.0e-09 65.5 149 38.3
COL.COLO4_19823 Corchorus olitorius HOM05D000081 ORTHO05D000036 6.5e-09 65.1 69 53.6
Gohir.D13G158700 Gossypium hirsutum HOM05D000081 ORTHO05D000036 6.5e-09 65.1 69 55.1
Gorai.004G034600 Gossypium raimondii HOM05D000081 ORTHO05D000036 6.5e-09 65.1 154 35.7
Gorai.013G179400 Gossypium raimondii HOM05D000081 ORTHO05D000036 6.5e-09 65.1 69 55.1
SGA_v2.0_scaffold92G28150 Striga asiatica HOM05D000081 ORTHO05D000036 6.5e-09 65.1 152 34.9
DCAR_023855 Daucus carota HOM05D000081 ORTHO05D000036 8.5e-09 64.7 100 46.0
Hund07346 Selenicereus undatus HOM05D000081 ORTHO05D000036 8.5e-09 64.7 144 36.8
SEGI_32158 Sequoiadendron giganteum HOM05D000081 ORTHO05D000036 8.5e-09 64.7 80 56.2
Actinidia03588 Actinidia chinensis HOM05D000081 ORTHO05D000036 1.1e-08 64.3 167 38.3
Hma1.2p1_0193F.1_g084400 Hydrangea macrophylla HOM05D000081 ORTHO05D000036 1.1e-08 64.3 163 36.8
TWI18G0115 Tripterygium wilfordii HOM05D000081 ORTHO05D000036 1.1e-08 64.3 86 50.0
vmacro11646 Vaccinium macrocarpon HOM05D000081 ORTHO05D000036 1.1e-08 64.3 154 35.1
VMungo1080G0615 Vigna mungo HOM05D000081 ORTHO05D000036 1.1e-08 64.3 164 37.2
ATR0751G236 Amborella trichopoda HOM05D000081 ORTHO05D000036 1.4e-08 63.9 111 42.3
Haze_09922 Corylus avellana HOM05D000081 ORTHO05D000036 1.4e-08 63.9 176 37.5
Atru.chr2.3906 Acer truncatum HOM05D000081 ORTHO05D000036 1.9e-08 63.5 158 39.2
Cfa016968 Carpinus fangiana HOM05D000081 ORTHO05D000036 1.9e-08 63.5 162 35.8
Nn1g07436 Nelumbo nucifera HOM05D000081 ORTHO05D000036 2.5e-08 63.2 48 66.7
CSS0029789 Camellia sinensis var. sinensis HOM05D000081 ORTHO05D000036 3.2e-08 62.8 150 38.0
Duzib213G0494 Durio zibethinus HOM05D000081 ORTHO05D000036 3.2e-08 62.8 159 35.2
Glyma.06G320700 Glycine max HOM05D000081 ORTHO05D000036 3.2e-08 62.8 163 36.2
CSS0047203 Camellia sinensis var. sinensis HOM05D000081 ORTHO05D000036 4.2e-08 62.4 69 53.6
Oeu055358.1 Olea europaea HOM05D000081 ORTHO05D000036 4.2e-08 62.4 149 32.2
Lj1g0022040 Lotus japonicus HOM05D000081 ORTHO05D000036 5.5e-08 62.0 65 53.8
Lj3g0012883 Lotus japonicus HOM05D000081 ORTHO05D000036 5.5e-08 62.0 163 35.6
MD12G1260600 Malus domestica HOM05D000081 ORTHO05D000036 5.5e-08 62.0 60 56.7
Oeu061793.1 Olea europaea HOM05D000081 ORTHO05D000036 5.5e-08 62.0 148 35.1
Prupe.6G361300 Prunus persica HOM05D000081 ORTHO05D000036 5.5e-08 62.0 62 58.1
DCAR_016808 Daucus carota HOM05D000081 ORTHO05D000036 7.2e-08 61.6 149 35.6
Aqoxy4G02209 Aquilegia oxysepala HOM05D000081 ORTHO05D000036 9.4e-08 61.2 43 69.8
ClCG10G003860 Citrullus lanatus HOM05D000081 ORTHO05D000036 9.4e-08 61.2 164 35.4
ClCG10G003980 Citrullus lanatus HOM05D000081 ORTHO05D000036 9.4e-08 61.2 164 35.4
ClCG10G004000 Citrullus lanatus HOM05D000081 ORTHO05D000036 9.4e-08 61.2 164 35.4
Nn1g03251 Nelumbo nucifera HOM05D000081 ORTHO05D000036 9.4e-08 61.2 44 68.2
TAR626G0547 Trochodendron aralioides HOM05D000081 ORTHO05D000036 9.4e-08 61.2 43 69.8
Phvul.005G005800 Phaseolus vulgaris HOM05D000081 ORTHO05D000036 1.6e-07 60.5 154 34.4
Dinv19637 Davidia involucrata HOM05D000081 ORTHO05D000036 2.1e-07 60.1 97 47.4
Glyma.09G250500 Glycine max HOM05D000081 ORTHO05D000036 2.1e-07 60.1 69 50.7
Phvul.008G054100 Phaseolus vulgaris HOM05D000081 ORTHO05D000036 2.7e-07 59.7 61 55.7
SGA_v2.0_scaffold49G18164 Striga asiatica HOM05D000081 ORTHO05D000036 2.7e-07 59.7 139 36.7
MBI15_g47426_MAGBIO Magnolia biondii HOM05D000081 ORTHO05D000036 3.6e-07 59.3 148 38.5
arahy.Tifrunner.gnm1.ann1.A3ULYL Arachis hypogaea HOM05D000081 ORTHO05D000036 4.6e-07 58.9 66 53.0
Cc05_g15790 Coffea canephora HOM05D000081 ORTHO05D000036 4.6e-07 58.9 168 33.9
SEGI_07340 Sequoiadendron giganteum HOM05D000081 ORTHO05D000036 6.1e-07 58.5 65 53.8
TPR.G18592 Trifolium pratense HOM05D000081 ORTHO05D000036 6.1e-07 58.5 68 50.0
Migut.M01577 Erythranthe guttata HOM05D000081 ORTHO05D000036 1.0e-06 57.8 149 38.9
PSO541G0652 Papaver somniferum HOM05D000081 ORTHO05D000036 1.0e-06 57.8 50 58.0
COL.COLO4_07795 Corchorus olitorius HOM05D000081 ORTHO05D000036 1.4e-06 57.4 159 36.5
Hma1.2p1_0036F.1_g022760 Hydrangea macrophylla HOM05D000081 ORTHO05D000036 1.4e-06 57.4 43 65.1
MSTRG.14531 Avicennia marina HOM05D000081 ORTHO05D000036 1.8e-06 57.0 144 36.8
Medtr7g080000 Medicago truncatula HOM05D000081 ORTHO05D000036 1.8e-06 57.0 57 52.6
Oeu062668.1 Olea europaea HOM05D000081 ORTHO05D000036 1.8e-06 57.0 62 48.4
Sc03g0011820 Simmondsia chinensis HOM05D000081 ORTHO05D000036 1.8e-06 57.0 165 33.3
TPR.G1939 Trifolium pratense HOM05D000081 ORTHO05D000036 1.8e-06 57.0 82 43.9
PSO675G6674 Papaver somniferum HOM05D000081 ORTHO05D000036 2.3e-06 56.6 50 56.0
RcHm_v2.0_Chr3g0447881 Rosa chinensis HOM05D000081 ORTHO05D000036 2.3e-06 56.6 63 55.6
CDE03G0222 Ceratophyllum demersum HOM05D000081 ORTHO05D000036 3.0e-06 56.2 64 54.7
Lalb_Chr04g0248001 Lupinus albus HOM05D000081 ORTHO05D000036 3.0e-06 56.2 56 53.6
SEGI_21237 Sequoiadendron giganteum HOM05D000081 ORTHO05D000036 3.0e-06 56.2 49 55.1
Medtr7g080020 Medicago truncatula HOM05D000081 ORTHO05D000036 3.9e-06 55.8 75 45.3
PGR119G1203 Punica granatum HOM05D000081 ORTHO05D000036 3.9e-06 55.8 68 50.0
MD04G1244700 Malus domestica HOM05D000081 ORTHO05D000036 5.1e-06 55.5 62 50.0
Psat5g171000 Pisum sativum HOM05D000081 ORTHO05D000036 5.1e-06 55.5 42 64.3
Rhsim06G0235700 Rhododendron simsii HOM05D000081 ORTHO05D000036 5.1e-06 55.5 161 32.9
VMungo0647G2175 Vigna mungo HOM05D000081 ORTHO05D000036 5.1e-06 55.5 63 46.0
FAN09G3529 Fragaria x ananassa HOM05D000081 ORTHO05D000036 6.7e-06 55.1 84 47.6
FAN14G0041 Fragaria x ananassa HOM05D000081 ORTHO05D000036 6.7e-06 55.1 84 47.6
FAN16G3136 Fragaria x ananassa HOM05D000081 ORTHO05D000036 6.7e-06 55.1 79 44.3
Glyma.18G242000 Glycine max HOM05D000081 ORTHO05D000036 6.7e-06 55.1 74 48.6
Medtr3g056100 Medicago truncatula HOM05D000081 ORTHO05D000036 6.7e-06 55.1 80 42.5
Sabra13G0077800 Salix brachista HOM05D000081 ORTHO05D000036 6.7e-06 55.1 49 57.1
FvH4_3g24010 Fragaria vesca HOM05D000081 ORTHO05D000036 8.8e-06 54.7 79 44.3
FAN11G3949 Fragaria x ananassa HOM05D000081 ORTHO05D000036 8.8e-06 54.7 79 44.3
FAN21G3648 Fragaria x ananassa HOM05D000081 ORTHO05D000036 8.8e-06 54.7 79 44.3
FAN25G1891 Fragaria x ananassa HOM05D000081 ORTHO05D000036 8.8e-06 54.7 79 44.3
FAN25G2443 Fragaria x ananassa HOM05D000081 ORTHO05D000036 8.8e-06 54.7 79 44.3
Glyma.14G016200 Glycine max HOM05D000081 ORTHO05D000036 8.8e-06 54.7 77 42.9
HPP92_006090 Vanilla planifolia HOM05D000081 ORTHO05D000036 8.8e-06 54.7 41 63.4


User provided reference genes

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