Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1136G063 Amborella trichopoda HOM05D002604 ORTHO05D003070 6.5e-63 243.8 117 100.0
ATR1136G173 Amborella trichopoda HOM05D002604 ORTHO05D003070 3.6e-53 211.5 117 86.3
ATR1136G177 Amborella trichopoda HOM05D002604 ORTHO05D003070 2.8e-50 201.8 117 83.8
Cc07_g18230 Coffea canephora HOM05D002604 ORTHO05D003070 4.4e-19 98.2 121 42.1
Nn5g28605 Nelumbo nucifera HOM05D002604 ORTHO05D003070 1.3e-18 96.7 117 44.4
CDE04G3160 Ceratophyllum demersum HOM05D002604 ORTHO05D003070 1.7e-18 96.3 120 39.2
Nn5g28609 Nelumbo nucifera HOM05D002604 ORTHO05D003070 2.9e-18 95.5 117 42.7
Nn5g28610 Nelumbo nucifera HOM05D002604 ORTHO05D003070 6.4e-18 94.4 121 41.3
Nn5g28606 Nelumbo nucifera HOM05D002604 ORTHO05D003070 1.1e-17 93.6 117 41.9
CSS0018540 Camellia sinensis var. sinensis HOM05D002604 ORTHO05D003070 1.9e-17 92.8 124 39.5
CSS0030832 Camellia sinensis var. sinensis HOM05D002604 ORTHO05D003070 4.1e-17 91.7 124 39.5
Nn1g06228 Nelumbo nucifera HOM05D002604 ORTHO05D003070 5.4e-17 91.3 117 40.2
Aqoxy5G01085 Aquilegia oxysepala HOM05D002604 ORTHO05D003070 7.0e-17 90.9 124 40.3
Nitab4.5_0020308g0010 Nicotiana tabacum HOM05D002604 ORTHO05D003070 7.0e-17 90.9 120 39.2
Peaxi162Scf00589g00214 Petunia axillaris HOM05D002604 ORTHO05D003070 9.2e-17 90.5 119 37.0
Nn5g27742 Nelumbo nucifera HOM05D002604 ORTHO05D003070 1.2e-16 90.1 120 37.5
Nitab4.5_0000805g0080 Nicotiana tabacum HOM05D002604 ORTHO05D003070 1.2e-16 90.1 117 38.5
CAN.G1032.6 Capsicum annuum HOM05D002604 ORTHO05D003070 3.5e-16 88.6 122 39.3
CDE07G0514 Ceratophyllum demersum HOM05D002604 ORTHO05D003070 3.5e-16 88.6 118 39.8
CDE07G1331 Ceratophyllum demersum HOM05D002604 ORTHO05D003070 3.5e-16 88.6 120 35.0
Peaxi162Scf00589g00019 Petunia axillaris HOM05D002604 ORTHO05D003070 3.5e-16 88.6 120 38.3
CAN.G1032.2 Capsicum annuum HOM05D002604 ORTHO05D003070 4.6e-16 88.2 119 41.2
CAN.G1163.2 Capsicum annuum HOM05D002604 ORTHO05D003070 4.6e-16 88.2 117 39.3
MBI03_g46617_MAGBIO Magnolia biondii HOM05D002604 ORTHO05D003070 6.0e-16 87.8 123 37.4
PGSC0003DMG400028660 Solanum tuberosum HOM05D002604 ORTHO05D003070 7.8e-16 87.4 126 38.1
Sopen11g001810 Solanum pennellii HOM05D002604 ORTHO05D003070 1.3e-15 86.7 126 37.3
Actinidia06633 Actinidia chinensis HOM05D002604 ORTHO05D003070 1.7e-15 86.3 117 38.5
CAN.G1032.5 Capsicum annuum HOM05D002604 ORTHO05D003070 1.7e-15 86.3 122 38.5
Hma1.2p1_0218F.1_g092570 Hydrangea macrophylla HOM05D002604 ORTHO05D003070 1.7e-15 86.3 118 37.3
Peaxi162Scf00589g00018 Petunia axillaris HOM05D002604 ORTHO05D003070 1.7e-15 86.3 120 37.5
Solyc11g005860.2 Solanum lycopersicum HOM05D002604 ORTHO05D003070 1.7e-15 86.3 126 37.3
CDE07G1020 Ceratophyllum demersum HOM05D002604 ORTHO05D003070 2.3e-15 85.9 118 39.0
Duzib264G0292 Durio zibethinus HOM05D002604 ORTHO05D003070 2.3e-15 85.9 117 39.3
Lj4A847G45 Lonicera japonica HOM05D002604 ORTHO05D003070 5.1e-15 84.7 119 35.3
Rhsim10G0135800 Rhododendron simsii HOM05D002604 ORTHO05D003070 5.1e-15 84.7 117 34.2
Sabra07G0089000 Salix brachista HOM05D002604 ORTHO05D003070 5.1e-15 84.7 117 38.5
PGSC0003DMG400028679 Solanum tuberosum HOM05D002604 ORTHO05D003070 5.1e-15 84.7 125 37.6
CiPaw.03G123100 Carya illinoinensis HOM05D002604 ORTHO05D003070 6.6e-15 84.3 117 36.8
SHI25208 Sapria himalayana HOM05D002604 ORTHO05D003070 6.6e-15 84.3 116 39.7
CSS0041802 Camellia sinensis var. sinensis HOM05D002604 ORTHO05D003070 1.1e-14 83.6 130 36.9
CiPaw.03G123400 Carya illinoinensis HOM05D002604 ORTHO05D003070 1.1e-14 83.6 118 36.4
Dinv24337 Davidia involucrata HOM05D002604 ORTHO05D003070 1.1e-14 83.6 117 40.2
Solyc11g005840.2 Solanum lycopersicum HOM05D002604 ORTHO05D003070 1.1e-14 83.6 122 38.5
GSVIVG01026500001 Vitis vinifera HOM05D002604 ORTHO05D003070 1.1e-14 83.6 117 43.6
Migut.H00731 Erythranthe guttata HOM05D002604 ORTHO05D003070 1.5e-14 83.2 122 38.5
Sopen11g001800 Solanum pennellii HOM05D002604 ORTHO05D003070 1.5e-14 83.2 122 37.7
Solyc11g005830.2 Solanum lycopersicum HOM05D002604 ORTHO05D003070 1.9e-14 82.8 122 37.7
Oeu037810.1 Olea europaea HOM05D002604 ORTHO05D003070 2.5e-14 82.4 117 36.8
Sopen11g001790 Solanum pennellii HOM05D002604 ORTHO05D003070 2.5e-14 82.4 122 37.7
Duzib264G0308 Durio zibethinus HOM05D002604 ORTHO05D003070 3.3e-14 82.0 117 37.6
Nitab4.5_0011375g0010 Nicotiana tabacum HOM05D002604 ORTHO05D003070 4.3e-14 81.6 126 35.7
Migut.H00734 Erythranthe guttata HOM05D002604 ORTHO05D003070 5.6e-14 81.3 117 35.0
PGSC0003DMG400028659 Solanum tuberosum HOM05D002604 ORTHO05D003070 1.2e-13 80.1 122 36.9
CSS0004480 Camellia sinensis var. sinensis HOM05D002604 ORTHO05D003070 1.6e-13 79.7 130 36.2
Cfa021207 Carpinus fangiana HOM05D002604 ORTHO05D003070 1.6e-13 79.7 117 34.2
DCAR_010258 Daucus carota HOM05D002604 ORTHO05D003070 1.6e-13 79.7 121 36.4
Prupe.4G280000 Prunus persica HOM05D002604 ORTHO05D003070 1.6e-13 79.7 119 37.8
Duzib264G0616 Durio zibethinus HOM05D002604 ORTHO05D003070 2.1e-13 79.3 117 36.8
Duzib264G1219 Durio zibethinus HOM05D002604 ORTHO05D003070 2.1e-13 79.3 117 36.8
vmacro12816 Vaccinium macrocarpon HOM05D002604 ORTHO05D003070 2.1e-13 79.3 120 34.2
SGA_v2.0_scaffold289G47271 Striga asiatica HOM05D002604 ORTHO05D003070 2.8e-13 79.0 117 37.6
Duzib264G0064 Durio zibethinus HOM05D002604 ORTHO05D003070 3.6e-13 78.6 117 36.8
Thecc.01G129200 Theobroma cacao HOM05D002604 ORTHO05D003070 4.7e-13 78.2 117 35.9
Cpa.g.sc42.142 Carica papaya HOM05D002604 ORTHO05D003070 6.2e-13 77.8 119 38.7
COL.COLO4_35698 Corchorus olitorius HOM05D002604 ORTHO05D003070 6.2e-13 77.8 119 36.1
HanXRQChr15g0469511 Helianthus annuus HOM05D002604 ORTHO05D003070 6.2e-13 77.8 123 35.0
Potri.007G108900 Populus trichocarpa HOM05D002604 ORTHO05D003070 6.2e-13 77.8 117 35.9
Lj4C846G5 Lonicera japonica HOM05D002604 ORTHO05D003070 8.1e-13 77.4 118 35.6
Potri.007G108800 Populus trichocarpa HOM05D002604 ORTHO05D003070 1.1e-12 77.0 117 35.0
Ciclev10000688m.g Citrus clementina HOM05D002604 ORTHO05D003070 1.4e-12 76.6 117 36.8
Nitab4.5_0000805g0090 Nicotiana tabacum HOM05D002604 ORTHO05D003070 1.4e-12 76.6 119 33.6
HanXRQChr15g0469391 Helianthus annuus HOM05D002604 ORTHO05D003070 1.8e-12 76.3 122 36.1
QL03p010938 Quercus lobata HOM05D002604 ORTHO05D003070 1.8e-12 76.3 121 32.2
PGR102G0193 Punica granatum HOM05D002604 ORTHO05D003070 2.3e-12 75.9 117 36.8
TWI79G1312 Tripterygium wilfordii HOM05D002604 ORTHO05D003070 3.1e-12 75.5 117 35.9
Sabra05G0050700 Salix brachista HOM05D002604 ORTHO05D003070 4.0e-12 75.1 117 35.0
Nn1g06231 Nelumbo nucifera HOM05D002604 ORTHO05D003070 5.2e-12 74.7 109 35.8
Oeu037812.1 Olea europaea HOM05D002604 ORTHO05D003070 5.2e-12 74.7 121 36.4
PGR102G0816 Punica granatum HOM05D002604 ORTHO05D003070 5.2e-12 74.7 122 36.1
Cfa002878 Carpinus fangiana HOM05D002604 ORTHO05D003070 6.8e-12 74.3 117 35.0
Eucgr.H04953 Eucalyptus grandis HOM05D002604 ORTHO05D003070 6.8e-12 74.3 121 38.0
AagrBONN_evm.TU.Sc2ySwM_369.578 Anthoceros agrestis HOM05D002604 ORTHO05D003070 1.5e-11 73.2 129 34.9
Manes.13G082800 Manihot esculenta HOM05D002604 ORTHO05D003070 1.5e-11 73.2 119 33.6
Potri.005G059900 Populus trichocarpa HOM05D002604 ORTHO05D003070 1.5e-11 73.2 117 32.5
AagrBONN_evm.TU.Sc2ySwM_344.1875 Anthoceros agrestis HOM05D002604 ORTHO05D003070 2.0e-11 72.8 119 35.3
Eucgr.H04958 Eucalyptus grandis HOM05D002604 ORTHO05D003070 2.0e-11 72.8 120 35.0
EL10Ac6g15281 Beta vulgaris HOM05D002604 ORTHO05D003070 2.6e-11 72.4 120 35.0
Ciclev10000628m.g Citrus clementina HOM05D002604 ORTHO05D003070 4.4e-11 71.6 117 35.0
FAN26G2672 Fragaria x ananassa HOM05D002604 ORTHO05D003070 4.4e-11 71.6 118 35.6
PSO541G2450 Papaver somniferum HOM05D002604 ORTHO05D003070 4.4e-11 71.6 121 33.9
Gohir.A11G056600 Gossypium hirsutum HOM05D002604 ORTHO05D003070 7.5e-11 70.9 116 37.1
Eucgr.H04955 Eucalyptus grandis HOM05D002604 ORTHO05D003070 9.9e-11 70.5 117 35.0
FAN28G0046 Fragaria x ananassa HOM05D002604 ORTHO05D003070 9.9e-11 70.5 117 34.2
MELO3C008050.2 Cucumis melo HOM05D002604 ORTHO05D003070 1.3e-10 70.1 117 33.3
Eucgr.H04954 Eucalyptus grandis HOM05D002604 ORTHO05D003070 1.3e-10 70.1 122 36.1
HanXRQChr15g0469501 Helianthus annuus HOM05D002604 ORTHO05D003070 1.3e-10 70.1 118 35.6
Dinv05237 Davidia involucrata HOM05D002604 ORTHO05D003070 2.2e-10 69.3 104 35.6
PSO541G3236 Papaver somniferum HOM05D002604 ORTHO05D003070 2.2e-10 69.3 128 35.2
AUR62003598 Chenopodium quinoa HOM05D002604 ORTHO05D003070 2.9e-10 68.9 117 34.2
Gohir.D11G060800 Gossypium hirsutum HOM05D002604 ORTHO05D003070 2.9e-10 68.9 116 33.6
Gorai.007G065500 Gossypium raimondii HOM05D002604 ORTHO05D003070 2.9e-10 68.9 116 33.6
PSO339G4415 Papaver somniferum HOM05D002604 ORTHO05D003070 2.9e-10 68.9 123 33.3
PSO541G2413 Papaver somniferum HOM05D002604 ORTHO05D003070 2.9e-10 68.9 122 32.8
MD15G1137400 Malus domestica HOM05D002604 ORTHO05D003070 3.7e-10 68.6 122 34.4
Os11g0209900 Oryza sativa ssp. japonica HOM05D002604 ORTHO05D003070 3.7e-10 68.6 125 31.2
ECA246G2143 Erigeron canadensis HOM05D002604 ORTHO05D003070 4.9e-10 68.2 117 35.0
FAN28G2350 Fragaria x ananassa HOM05D002604 ORTHO05D003070 4.9e-10 68.2 118 33.9
VMungo0251G1832 Vigna mungo HOM05D002604 ORTHO05D003070 4.9e-10 68.2 121 33.1
Atru.chr4.856 Acer truncatum HOM05D002604 ORTHO05D003070 6.4e-10 67.8 117 32.5
AUR62017909 Chenopodium quinoa HOM05D002604 ORTHO05D003070 6.4e-10 67.8 117 33.3
RcHm_v2.0_Chr2g0120561 Rosa chinensis HOM05D002604 ORTHO05D003070 8.3e-10 67.4 118 37.3
RcHm_v2.0_Chr2g0120531 Rosa chinensis HOM05D002604 ORTHO05D003070 1.1e-09 67.0 121 33.9
FvH4_1g24170 Fragaria vesca HOM05D002604 ORTHO05D003070 1.9e-09 66.2 118 33.1
SMO117G0147 Selaginella moellendorffii HOM05D002604 ORTHO05D003070 1.9e-09 66.2 118 35.6
CsaV3_6G041700 Cucumis sativus L. HOM05D002604 ORTHO05D003070 2.4e-09 65.9 117 32.5
Eucgr.H04956 Eucalyptus grandis HOM05D002604 ORTHO05D003070 2.4e-09 65.9 118 35.6
Lsat_1_v5_gn_5_33980 Lactuca sativa HOM05D002604 ORTHO05D003070 2.4e-09 65.9 120 32.5
CDE07G0334 Ceratophyllum demersum HOM05D002604 ORTHO05D003070 4.1e-09 65.1 101 36.6
FAN19G0321 Fragaria x ananassa HOM05D002604 ORTHO05D003070 4.1e-09 65.1 118 33.1
Glyma.05G191000 Glycine max HOM05D002604 ORTHO05D003070 4.1e-09 65.1 125 30.4
Mapoly0011s0126 Marchantia polymorpha HOM05D002604 ORTHO05D003070 4.1e-09 65.1 120 33.3
EL10Ac6g15140 Beta vulgaris HOM05D002604 ORTHO05D003070 9.2e-09 63.9 131 33.6
ECA246G1286 Erigeron canadensis HOM05D002604 ORTHO05D003070 9.2e-09 63.9 121 30.6
HPP92_005734 Vanilla planifolia HOM05D002604 ORTHO05D003070 9.2e-09 63.9 117 33.3
MD15G1137100 Malus domestica HOM05D002604 ORTHO05D003070 2.1e-08 62.8 121 32.2
Mapoly0008s0004 Marchantia polymorpha HOM05D002604 ORTHO05D003070 2.1e-08 62.8 125 33.6
Nn3g19264 Nelumbo nucifera HOM05D002604 ORTHO05D003070 2.7e-08 62.4 118 33.1
Phvul.002G271300 Phaseolus vulgaris HOM05D002604 ORTHO05D003070 2.7e-08 62.4 118 30.5
Phvul.002G271400 Phaseolus vulgaris HOM05D002604 ORTHO05D003070 2.7e-08 62.4 117 28.2
Medtr8g093560 Medicago truncatula HOM05D002604 ORTHO05D003070 3.5e-08 62.0 120 33.3
Sed0009181 Sechium edule HOM05D002604 ORTHO05D003070 4.6e-08 61.6 118 33.1
HPP92_005704 Vanilla planifolia HOM05D002604 ORTHO05D003070 6.0e-08 61.2 117 32.5
ClCG01G015460 Citrullus lanatus HOM05D002604 ORTHO05D003070 7.8e-08 60.8 117 32.5
MBI04_g21148_MAGBIO Magnolia biondii HOM05D002604 ORTHO05D003070 1.0e-07 60.5 117 30.8
arahy.Tifrunner.gnm1.ann1.03H2AV Arachis hypogaea HOM05D002604 ORTHO05D003070 1.3e-07 60.1 122 28.7
arahy.Tifrunner.gnm1.ann1.TGDC4A Arachis hypogaea HOM05D002604 ORTHO05D003070 1.3e-07 60.1 122 28.7
Psat7g046240 Pisum sativum HOM05D002604 ORTHO05D003070 1.7e-07 59.7 119 31.9
Zm00001eb168640 Zea mays HOM05D002604 ORTHO05D003070 1.7e-07 59.7 121 29.8
Migut.H00732 Erythranthe guttata HOM05D002604 ORTHO05D003070 3.0e-07 58.9 114 31.6
Lsat_1_v5_gn_5_34261 Lactuca sativa HOM05D002604 ORTHO05D003070 3.0e-07 58.9 121 30.6
Lsat_1_v5_gn_5_34281 Lactuca sativa HOM05D002604 ORTHO05D003070 3.0e-07 58.9 124 33.1
MBI04_g21146_MAGBIO Magnolia biondii HOM05D002604 ORTHO05D003070 3.9e-07 58.5 117 30.8
Lj3g0007016 Lotus japonicus HOM05D002604 ORTHO05D003070 8.6e-07 57.4 116 29.3
GSVIVG01026502001 Vitis vinifera HOM05D002604 ORTHO05D003070 8.6e-07 57.4 33 69.7
Lj4g0006471 Lotus japonicus HOM05D002604 ORTHO05D003070 1.1e-06 57.0 117 30.8
Medtr8g093550 Medicago truncatula HOM05D002604 ORTHO05D003070 1.5e-06 56.6 117 29.1
CANSAT01G1539 Cannabis sativa HOM05D002604 ORTHO05D003070 2.5e-06 55.8 123 31.7
Nn1g02039 Nelumbo nucifera HOM05D002604 ORTHO05D003070 3.3e-06 55.5 123 30.9
CDE07G1484 Ceratophyllum demersum HOM05D002604 ORTHO05D003070 4.3e-06 55.1 33 66.7
AUR62003823 Chenopodium quinoa HOM05D002604 ORTHO05D003070 4.3e-06 55.1 126 31.7


User provided reference genes

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