Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1136G026 Amborella trichopoda HOM05D004409 ORTHO05D005292 3.8e-75 284.6 135 100.0
ATR1136G215 Amborella trichopoda HOM05D004409 ORTHO05D005292 6.9e-32 141.0 102 61.8
Sabra03G0054600 Salix brachista HOM05D004409 ORTHO05D005292 7.3e-26 120.9 106 50.9
Dinv28881 Davidia involucrata HOM05D004409 ORTHO05D005292 3.6e-25 118.6 110 50.9
Potri.003G084000 Populus trichocarpa HOM05D004409 ORTHO05D005292 3.6e-25 118.6 106 52.8
GSVIVG01004835001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.4e-24 116.7 105 49.5
TWI60G0543 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 1.8e-24 116.3 105 56.2
Ciclev10022946m.g Citrus clementina HOM05D004409 ORTHO05D005292 3.1e-24 115.5 76 64.5
CSS0044628 Camellia sinensis var. sinensis HOM05D004409 ORTHO05D005292 4.0e-24 115.2 76 64.5
Atru.chr9.1197 Acer truncatum HOM05D004409 ORTHO05D005292 2.0e-23 112.8 99 52.5
DCAR_008327 Daucus carota HOM05D004409 ORTHO05D005292 2.0e-23 112.8 76 60.5
Actinidia10866 Actinidia chinensis HOM05D004409 ORTHO05D005292 5.8e-23 111.3 99 53.5
Actinidia31492 Actinidia chinensis HOM05D004409 ORTHO05D005292 5.8e-23 111.3 99 52.5
ECA240G1407 Erigeron canadensis HOM05D004409 ORTHO05D005292 7.6e-23 110.9 76 63.2
GSVIVG01004822001 Vitis vinifera HOM05D004409 ORTHO05D005292 7.6e-23 110.9 93 54.8
GSVIVG01004827001 Vitis vinifera HOM05D004409 ORTHO05D005292 7.6e-23 110.9 93 54.8
CAN.G845.22 Capsicum annuum HOM05D004409 ORTHO05D005292 1.3e-22 110.2 78 64.1
Hma1.2p1_3159F.1_g333389 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 1.3e-22 110.2 110 45.5
Gohir.D12G214900 Gossypium hirsutum HOM05D004409 ORTHO05D005292 2.2e-22 109.4 99 49.5
Peaxi162Scf00102g00085 Petunia axillaris HOM05D004409 ORTHO05D005292 2.2e-22 109.4 102 49.0
Aqoxy3G02644 Aquilegia oxysepala HOM05D004409 ORTHO05D005292 2.9e-22 109.0 94 50.0
Gorai.008G230500 Gossypium raimondii HOM05D004409 ORTHO05D005292 3.8e-22 108.6 99 48.5
Manes.01G089900 Manihot esculenta HOM05D004409 ORTHO05D005292 3.8e-22 108.6 99 51.5
QL12p008592 Quercus lobata HOM05D004409 ORTHO05D005292 3.8e-22 108.6 100 50.0
TAR636G0884 Trochodendron aralioides HOM05D004409 ORTHO05D005292 3.8e-22 108.6 106 48.1
ATR1136G211 Amborella trichopoda HOM05D004409 ORTHO05D005292 4.9e-22 108.2 107 52.3
Cc08_g11210 Coffea canephora HOM05D004409 ORTHO05D005292 4.9e-22 108.2 97 50.5
Gohir.A12G212400 Gossypium hirsutum HOM05D004409 ORTHO05D005292 4.9e-22 108.2 99 48.5
THA.LOC104809923 Tarenaya hassleriana HOM05D004409 ORTHO05D005292 4.9e-22 108.2 76 57.9
Thecc.03G239100 Theobroma cacao HOM05D004409 ORTHO05D005292 8.4e-22 107.5 104 51.0
Cfa012334 Carpinus fangiana HOM05D004409 ORTHO05D005292 1.1e-21 107.1 100 52.0
COL.COLO4_06685 Corchorus olitorius HOM05D004409 ORTHO05D005292 1.1e-21 107.1 103 48.5
Nitab4.5_0000185g0190 Nicotiana tabacum HOM05D004409 ORTHO05D005292 1.4e-21 106.7 107 51.4
Duzib205G0528 Durio zibethinus HOM05D004409 ORTHO05D005292 1.9e-21 106.3 101 50.5
Cfa012333 Carpinus fangiana HOM05D004409 ORTHO05D005292 2.4e-21 105.9 108 46.3
HanXRQChr03g0089681 Helianthus annuus HOM05D004409 ORTHO05D005292 4.2e-21 105.1 76 56.6
HanXRQChr13g0419061 Helianthus annuus HOM05D004409 ORTHO05D005292 4.2e-21 105.1 95 49.5
Lsat_1_v5_gn_6_94501 Lactuca sativa HOM05D004409 ORTHO05D005292 5.4e-21 104.8 95 49.5
DCAR_003519 Daucus carota HOM05D004409 ORTHO05D005292 1.2e-20 103.6 74 62.2
CANSAT21G0033 Cannabis sativa HOM05D004409 ORTHO05D005292 1.6e-20 103.2 96 51.0
Ciclev10030379m.g Citrus clementina HOM05D004409 ORTHO05D005292 1.6e-20 103.2 73 58.9
GSVIVG01004832001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.6e-20 103.2 78 55.1
Duzib068G0789 Durio zibethinus HOM05D004409 ORTHO05D005292 2.1e-20 102.8 98 49.0
Gohir.D13G124300 Gossypium hirsutum HOM05D004409 ORTHO05D005292 2.1e-20 102.8 104 49.0
CsaV3_3G004710 Cucumis sativus L. HOM05D004409 ORTHO05D005292 3.5e-20 102.1 100 45.0
Thecc.03G144800 Theobroma cacao HOM05D004409 ORTHO05D005292 7.9e-20 100.9 73 56.2
Cc06_g12260 Coffea canephora HOM05D004409 ORTHO05D005292 1.0e-19 100.5 112 42.9
DCAR_005587 Daucus carota HOM05D004409 ORTHO05D005292 1.0e-19 100.5 95 49.5
Duzib068G1042 Durio zibethinus HOM05D004409 ORTHO05D005292 1.0e-19 100.5 97 47.4
ECA240G4009 Erigeron canadensis HOM05D004409 ORTHO05D005292 1.3e-19 100.1 78 52.6
MELO3C014170.2 Cucumis melo HOM05D004409 ORTHO05D005292 3.0e-19 99.0 95 44.2
Thecc.08G189000 Theobroma cacao HOM05D004409 ORTHO05D005292 3.0e-19 99.0 94 51.1
Ciclev10022894m.g Citrus clementina HOM05D004409 ORTHO05D005292 5.1e-19 98.2 102 45.1
COL.COLO4_37301 Corchorus olitorius HOM05D004409 ORTHO05D005292 5.1e-19 98.2 73 54.8
Peaxi162Scf00391g00715 Petunia axillaris HOM05D004409 ORTHO05D005292 5.1e-19 98.2 73 60.3
COL.COLO4_21695 Corchorus olitorius HOM05D004409 ORTHO05D005292 6.7e-19 97.8 76 55.3
Duzib205G0410 Durio zibethinus HOM05D004409 ORTHO05D005292 6.7e-19 97.8 98 49.0
Actinidia01026 Actinidia chinensis HOM05D004409 ORTHO05D005292 8.7e-19 97.4 73 53.4
ClCG10G002150 Citrullus lanatus HOM05D004409 ORTHO05D005292 8.7e-19 97.4 95 44.2
Ciclev10033339m.g Citrus clementina HOM05D004409 ORTHO05D005292 1.1e-18 97.1 76 55.3
Thecc.03G144900 Theobroma cacao HOM05D004409 ORTHO05D005292 1.1e-18 97.1 106 45.3
CANSAT21G0737 Cannabis sativa HOM05D004409 ORTHO05D005292 1.5e-18 96.7 98 48.0
Cpa.g.sc13.213 Carica papaya HOM05D004409 ORTHO05D005292 1.5e-18 96.7 72 58.3
Atru.chr6.1971 Acer truncatum HOM05D004409 ORTHO05D005292 1.9e-18 96.3 95 47.4
Eucgr.K00114 Eucalyptus grandis HOM05D004409 ORTHO05D005292 2.5e-18 95.9 73 52.1
CAN.G572.17 Capsicum annuum HOM05D004409 ORTHO05D005292 4.3e-18 95.1 94 46.8
Hma1.2p1_1014F.1_g247850 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 4.3e-18 95.1 109 45.9
RcHm_v2.0_Chr1g0328141 Rosa chinensis HOM05D004409 ORTHO05D005292 7.4e-18 94.4 99 43.4
RcHm_v2.0_Chr1g0372991 Rosa chinensis HOM05D004409 ORTHO05D005292 9.6e-18 94.0 99 43.4
Dinv28880 Davidia involucrata HOM05D001887 ORTHO05D003756 1.3e-17 93.6 118 39.0
PGR142G3629 Punica granatum HOM05D004409 ORTHO05D005292 1.3e-17 93.6 73 52.1
EL10Ac1g00121 Beta vulgaris HOM05D004409 ORTHO05D005292 1.6e-17 93.2 73 54.8
Atru.chr9.1196 Acer truncatum HOM05D004409 ORTHO05D005292 2.1e-17 92.8 73 52.1
CsaV3_3G002240 Cucumis sativus L. HOM05D004409 ORTHO05D005292 2.8e-17 92.4 100 41.0
ECA240G0589 Erigeron canadensis HOM05D004409 ORTHO05D005292 2.8e-17 92.4 95 44.2
FAN10G4140 Fragaria x ananassa HOM05D004409 ORTHO05D005292 2.8e-17 92.4 74 50.0
Oeu019420.1 Olea europaea HOM05D004409 ORTHO05D005292 2.8e-17 92.4 100 43.0
Aqoxy6G00065 Aquilegia oxysepala HOM05D004409 ORTHO05D005292 3.6e-17 92.0 73 54.8
CANSAT56G2756 Cannabis sativa HOM05D004409 ORTHO05D005292 3.6e-17 92.0 98 42.9
CANSAT56G2887 Cannabis sativa HOM05D004409 ORTHO05D005292 3.6e-17 92.0 105 41.9
Migut.H01906 Erythranthe guttata HOM05D004409 ORTHO05D005292 3.6e-17 92.0 75 50.7
FAN06G5092 Fragaria x ananassa HOM05D004409 ORTHO05D005292 3.6e-17 92.0 111 42.3
RcHm_v2.0_Chr1g0372951 Rosa chinensis HOM05D004409 ORTHO05D005292 3.6e-17 92.0 99 46.5
Sed0027041 Sechium edule HOM05D004409 ORTHO05D005292 3.6e-17 92.0 102 41.2
Haze_08359 Corylus avellana HOM05D004409 ORTHO05D005292 4.8e-17 91.7 98 41.8
MELO3C013895.2 Cucumis melo HOM05D004409 ORTHO05D005292 4.8e-17 91.7 89 44.9
Oeu006074.1 Olea europaea HOM05D004409 ORTHO05D005292 4.8e-17 91.7 89 46.1
RcHm_v2.0_Chr1g0328171 Rosa chinensis HOM05D004409 ORTHO05D005292 4.8e-17 91.7 99 45.5
Thecc.03G144700 Theobroma cacao HOM05D004409 ORTHO05D005292 4.8e-17 91.7 73 54.8
Dinv34530 Davidia involucrata HOM05D004409 ORTHO05D005292 6.2e-17 91.3 105 41.9
HanXRQChr03g0089691 Helianthus annuus HOM05D004409 ORTHO05D005292 8.1e-17 90.9 105 41.9
GSVIVG01004836001 Vitis vinifera HOM05D004409 ORTHO05D005292 8.1e-17 90.9 73 52.1
CANSAT56G4079 Cannabis sativa HOM05D004409 ORTHO05D005292 1.1e-16 90.5 95 41.1
Ciclev10033338m.g Citrus clementina HOM05D004409 ORTHO05D005292 1.1e-16 90.5 102 45.1
Migut.H01907 Erythranthe guttata HOM05D004409 ORTHO05D005292 1.1e-16 90.5 75 50.7
FAN03G2468 Fragaria x ananassa HOM05D004409 ORTHO05D005292 1.1e-16 90.5 74 50.0
Prupe.5G054600 Prunus persica HOM05D004409 ORTHO05D005292 1.1e-16 90.5 100 45.0
Dinv25140 Davidia involucrata HOM05D004409 ORTHO05D005292 1.4e-16 90.1 99 44.4
CANSAT56G0658 Cannabis sativa HOM05D004409 ORTHO05D005292 1.8e-16 89.7 95 41.1
FAN10G3781 Fragaria x ananassa HOM05D004409 ORTHO05D005292 1.8e-16 89.7 99 42.4
GSVIVG01024506001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.8e-16 89.7 97 45.4
Hund27103 Selenicereus undatus HOM05D004409 ORTHO05D005292 2.4e-16 89.4 73 52.1
TAR375G0498 Trochodendron aralioides HOM05D004409 ORTHO05D005292 2.4e-16 89.4 106 43.4
FvH4_7g26400 Fragaria vesca HOM05D004409 ORTHO05D005292 3.1e-16 89.0 99 42.4
FvH4_7g26430 Fragaria vesca HOM05D004409 ORTHO05D005292 3.1e-16 89.0 100 45.0
TWI39G0819 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 3.1e-16 89.0 76 51.3
GSVIVG01013894001 Vitis vinifera HOM05D004409 ORTHO05D005292 3.1e-16 89.0 76 51.3
HanXRQChr13g0419051 Helianthus annuus HOM05D004409 ORTHO05D005292 4.0e-16 88.6 90 42.2
TAR375G0484 Trochodendron aralioides HOM05D004409 ORTHO05D005292 5.3e-16 88.2 105 39.0
GSVIVG01004838001 Vitis vinifera HOM05D004409 ORTHO05D005292 5.3e-16 88.2 73 50.7
GSVIVG01013815001 Vitis vinifera HOM05D004409 ORTHO05D005292 5.3e-16 88.2 103 38.8
GSVIVG01013816001 Vitis vinifera HOM05D004409 ORTHO05D005292 6.9e-16 87.8 76 51.3
MSTRG.27238 Avicennia marina HOM05D004409 ORTHO05D005292 9.0e-16 87.4 76 53.9
COL.COLO4_32251 Corchorus olitorius HOM05D004409 ORTHO05D005292 9.0e-16 87.4 73 50.7
FAN01G0604 Fragaria x ananassa HOM05D004409 ORTHO05D005292 9.0e-16 87.4 74 50.0
TAR375G0880 Trochodendron aralioides HOM05D004409 ORTHO05D005292 9.0e-16 87.4 105 43.8
COL.COLO4_37302 Corchorus olitorius HOM05D004409 ORTHO05D005292 1.2e-15 87.0 102 40.2
ATR0745G048 Amborella trichopoda HOM05D004409 ORTHO05D005292 1.5e-15 86.7 111 39.6
FAN17G1151 Fragaria x ananassa HOM05D004409 ORTHO05D005292 1.5e-15 86.7 75 50.7
MD07G1239700 Malus domestica HOM05D004409 ORTHO05D005292 1.5e-15 86.7 101 45.5
PGR042G3450 Punica granatum HOM05D004409 ORTHO05D005292 1.5e-15 86.7 73 45.2
Lsat_1_v5_gn_6_94401 Lactuca sativa HOM05D004409 ORTHO05D005292 2.0e-15 86.3 76 47.4
GSVIVG01013825001 Vitis vinifera HOM05D004409 ORTHO05D005292 2.6e-15 85.9 103 39.8
GSVIVG01024502001 Vitis vinifera HOM05D004409 ORTHO05D005292 2.6e-15 85.9 103 42.7
THA.LOC104816486 Tarenaya hassleriana HOM05D004409 ORTHO05D005292 3.4e-15 85.5 100 45.0
TAR375G0026 Trochodendron aralioides HOM05D004409 ORTHO05D005292 3.4e-15 85.5 106 40.6
Hma1.2p1_1014F.1_g247830 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 4.5e-15 85.1 98 42.9
MD07G1239800 Malus domestica HOM05D004409 ORTHO05D005292 4.5e-15 85.1 101 44.6
TWI39G0462 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 5.8e-15 84.7 96 41.7
Aa31LG9G14800 Aethionema arabicum HOM05D004409 ORTHO05D005292 7.6e-15 84.3 98 42.9
Hma1.2p1_1014F.1_g247840 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 1.3e-14 83.6 109 43.1
Oeu056339.1 Olea europaea HOM05D004409 ORTHO05D005292 1.3e-14 83.6 101 39.6
Prupe.7G057100 Prunus persica HOM05D004409 ORTHO05D005292 1.3e-14 83.6 77 48.1
Thecc.07G180600 Theobroma cacao HOM05D004409 ORTHO05D005292 2.2e-14 82.8 73 47.9
TWI39G0193 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 2.2e-14 82.8 96 42.7
TWI39G0310 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 2.2e-14 82.8 96 41.7
MD07G1239500 Malus domestica HOM05D004409 ORTHO05D005292 2.9e-14 82.4 73 45.2
HanXRQChr13g0418291 Helianthus annuus HOM05D004409 ORTHO05D005292 4.9e-14 81.6 77 45.5
PGSC0003DMG400026212 Solanum tuberosum HOM05D004409 ORTHO05D005292 1.9e-13 79.7 94 41.5
Actinidia25914 Actinidia chinensis HOM05D004409 ORTHO05D005292 2.4e-13 79.3 73 47.9
C03p49230 Brassica napus HOM05D004409 ORTHO05D005292 3.5e-12 75.5 75 45.3
BcaC01g03728 Brassica carinata HOM05D004409 ORTHO05D005292 6.0e-12 74.7 73 45.2
A03p40420 Brassica napus HOM05D004409 ORTHO05D005292 6.0e-12 74.7 73 45.2
BolC3t17205H Brassica oleracea HOM05D004409 ORTHO05D005292 6.0e-12 74.7 73 45.2
BraA03t13197Z Brassica rapa HOM05D004409 ORTHO05D005292 6.0e-12 74.7 73 45.2
Migut.J00932 Erythranthe guttata HOM05D004409 ORTHO05D005292 6.0e-12 74.7 101 39.6
SGA_v2.0_scaffold91G28102 Striga asiatica HOM05D004409 ORTHO05D005292 7.9e-12 74.3 77 44.2
BcaB04g18966 Brassica carinata HOM05D004409 ORTHO05D005292 1.3e-11 73.6 73 43.8
Gorai.013G138900 Gossypium raimondii HOM05D004409 ORTHO05D005292 1.1e-10 70.5 66 50.0
SMO134G0054 Selaginella moellendorffii HOM05D004409 ORTHO05D005292 1.1e-10 70.5 76 40.8
Carub.0006s2782 Capsella rubella HOM05D004409 ORTHO05D005292 2.5e-10 69.3 106 39.6
CARHR260260 Cardamine hirsuta HOM05D004409 ORTHO05D005292 9.6e-10 67.4 76 44.7
CAN.G572.18 Capsicum annuum HOM05D004409 ORTHO05D005292 1.3e-09 67.0 97 33.0
Sp6g08250 Schrenkiella parvula HOM05D004409 ORTHO05D005292 3.7e-09 65.5 100 35.0
Cfa012335 Carpinus fangiana HOM05D004409 ORTHO05D005292 6.2e-09 64.7 112 38.4
C09p37510 Brassica napus HOM05D004489 ORTHO05D032456 5.3e-08 61.6 99 37.4
BolC9t56581H Brassica oleracea HOM05D004489 ORTHO05D032456 5.3e-08 61.6 99 37.4
RcHm_v2.0_Chr7g0218541 Rosa chinensis HOM05D002739 ORTHO05D002877 5.3e-08 61.6 105 31.4
BcaC04g20961 Brassica carinata HOM05D004489 ORTHO05D032456 6.9e-08 61.2 98 37.8
Eucgr.K00115 Eucalyptus grandis HOM05D004409 ORTHO05D005292 1.2e-07 60.5 94 39.4
SMO236G0006 Selaginella moellendorffii HOM05D038626 ORTHO05D375303 2.0e-07 59.7 86 34.9
SMO111G0095 Selaginella moellendorffii HOM05D004409 ORTHO05D005292 2.6e-07 59.3 79 35.4
FvH4_3g29300 Fragaria vesca HOM05D002739 ORTHO05D002877 4.5e-07 58.5 100 31.0
Sc10g0004220 Simmondsia chinensis HOM05D002739 ORTHO05D002877 7.6e-07 57.8 110 29.1
Aqoxy2G00284 Aquilegia oxysepala HOM05D002739 ORTHO05D002877 1.0e-06 57.4 83 33.7
FvH4_7g02210 Fragaria vesca HOM05D002739 ORTHO05D002877 1.0e-06 57.4 106 29.2
SMO187G0001 Selaginella moellendorffii HOM05D038626 ORTHO05D374465 1.0e-06 57.4 86 33.7
SMO236G0083 Selaginella moellendorffii HOM05D038626 ORTHO05D379396 1.0e-06 57.4 86 33.7
ATR0721G147 Amborella trichopoda HOM05D002739 ORTHO05D002877 1.7e-06 56.6 77 32.5
AT4G33550 Arabidopsis thaliana HOM05D002739 ORTHO05D002877 2.2e-06 56.2 109 29.4
BcaB01g02799 Brassica carinata HOM05D004409 ORTHO05D005292 2.2e-06 56.2 76 35.5
Carub.0007s0690 Capsella rubella HOM05D002739 ORTHO05D002877 2.2e-06 56.2 74 33.8
CARHR241650 Cardamine hirsuta HOM05D002739 ORTHO05D002877 2.2e-06 56.2 110 30.0
MD02G1296300 Malus domestica HOM05D002739 ORTHO05D002877 2.2e-06 56.2 77 32.5
Thhalv10026604m.g Eutrema salsugineum HOM05D002739 ORTHO05D002877 6.5e-06 54.7 78 32.1
FAN10G1712 Fragaria x ananassa HOM05D002739 ORTHO05D002877 6.5e-06 54.7 106 28.3
Sp7g31290 Schrenkiella parvula HOM05D002739 ORTHO05D002877 6.5e-06 54.7 78 32.1
Aa31sc407G10 Aethionema arabicum HOM05D002739 ORTHO05D002877 8.4e-06 54.3 78 33.3
AL7G17970 Arabidopsis lyrata HOM05D002739 ORTHO05D002877 8.4e-06 54.3 109 29.4
QL01p017875 Quercus lobata HOM05D002739 ORTHO05D002877 8.4e-06 54.3 80 33.8


User provided reference genes

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