Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1134G078 Amborella trichopoda HOM05D005162 ORTHO05D007064 1.8e-190 669.1 334 100.0
TAR376G0995 Trochodendron aralioides HOM05D005162 ORTHO05D007064 2.3e-153 545.8 321 83.5
Aqoxy6G00135 Aquilegia oxysepala HOM05D005162 ORTHO05D007064 4.3e-152 541.6 330 81.5
PSO170G6393 Papaver somniferum HOM05D005162 ORTHO05D007064 4.3e-152 541.6 325 82.2
FvH4_5g28710 Fragaria vesca HOM05D005162 ORTHO05D007064 8.1e-151 537.3 325 78.8
FAN18G1533 Fragaria x ananassa HOM05D005162 ORTHO05D007064 8.1e-151 537.3 325 78.8
HanXRQChr10g0294681 Helianthus annuus HOM05D005162 ORTHO05D007064 4.0e-150 535.0 325 81.2
DCAR_006685 Daucus carota HOM05D005162 ORTHO05D007064 5.3e-150 534.6 322 81.1
Gohir.A03G192500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 9.0e-150 533.9 333 79.6
Nn5g27579 Nelumbo nucifera HOM05D005162 ORTHO05D007064 1.5e-149 533.1 318 81.8
Gohir.D02G213500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 2.6e-149 532.3 333 79.6
Thecc.02G090800 Theobroma cacao HOM05D005162 ORTHO05D007064 3.4e-149 531.9 324 80.9
Cc02_g22900 Coffea canephora HOM05D005162 ORTHO05D007064 1.3e-148 530.0 330 79.1
FAN04G0484 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.3e-148 530.0 328 77.4
Gorai.005G241400 Gossypium raimondii HOM05D005162 ORTHO05D007064 1.3e-148 530.0 333 79.3
RcHm_v2.0_Chr7g0220871 Rosa chinensis HOM05D005162 ORTHO05D007064 1.3e-148 530.0 323 78.3
ECA234G0102 Erigeron canadensis HOM05D005162 ORTHO05D007064 2.9e-148 528.9 314 81.8
Duzib132G0282 Durio zibethinus HOM05D005162 ORTHO05D007064 3.8e-148 528.5 330 79.4
ClCG11G013410 Citrullus lanatus HOM05D005162 ORTHO05D007064 6.4e-148 527.7 320 80.6
Lsat_1_v5_gn_5_105901 Lactuca sativa HOM05D005162 ORTHO05D007064 1.1e-147 526.9 323 81.4
Manes.07G021300 Manihot esculenta HOM05D005162 ORTHO05D007064 1.1e-147 526.9 327 80.1
Potri.004G219300 Populus trichocarpa HOM05D005162 ORTHO05D007064 1.1e-147 526.9 327 79.2
MSTRG.16505 Avicennia marina HOM05D005162 ORTHO05D007064 4.2e-147 525.0 330 77.9
HPP92_001076 Vanilla planifolia HOM05D005162 ORTHO05D007064 4.2e-147 525.0 313 81.8
Peaxi162Scf00011g00742 Petunia axillaris HOM05D005162 ORTHO05D007064 7.1e-147 524.2 332 77.1
Sc07g0004980 Simmondsia chinensis HOM05D005162 ORTHO05D007064 7.1e-147 524.2 320 80.3
SalBow8G3448 Salvia bowleyana HOM05D005162 ORTHO05D007064 9.3e-147 523.9 328 77.4
CANSAT54G0278 Cannabis sativa HOM05D005162 ORTHO05D007064 1.6e-146 523.1 315 79.7
CsaV3_5G029940 Cucumis sativus L. HOM05D005162 ORTHO05D007064 2.7e-146 522.3 320 80.3
Atru.chr6.699 Acer truncatum HOM05D005162 ORTHO05D007064 6.0e-146 521.2 322 79.2
Ah.03g137150 Amaranthus hybridus HOM05D005162 ORTHO05D007064 1.0e-145 520.4 312 78.5
MELO3C011838.2 Cucumis melo HOM05D005162 ORTHO05D007064 1.8e-145 519.6 320 79.7
COL.COLO4_11752 Corchorus olitorius HOM05D005162 ORTHO05D007064 3.0e-145 518.8 333 78.1
THA.LOC104803191 Tarenaya hassleriana HOM05D005162 ORTHO05D007064 3.9e-145 518.5 319 78.7
Ciclev10001794m.g Citrus clementina HOM05D005162 ORTHO05D007064 1.1e-144 516.9 313 79.9
FAN08G0254 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.1e-144 516.9 341 74.2
arahy.Tifrunner.gnm1.ann1.R3RHS8 Arachis hypogaea HOM05D005162 ORTHO05D007064 1.3e-143 513.5 327 76.5
CiPaw.05G051000 Carya illinoinensis HOM05D005162 ORTHO05D007064 1.3e-143 513.5 328 75.6
Sed0011379 Sechium edule HOM05D005162 ORTHO05D007064 1.3e-143 513.5 310 80.3
arahy.Tifrunner.gnm1.ann1.3Y07W7 Arachis hypogaea HOM05D005162 ORTHO05D007064 1.6e-143 513.1 327 76.5
Eucgr.G00398 Eucalyptus grandis HOM05D005162 ORTHO05D007064 2.8e-143 512.3 314 79.3
FAN13G0306 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.8e-143 512.3 341 73.9
A01p20180 Brassica napus HOM05D005162 ORTHO05D007064 3.7e-143 511.9 315 78.7
PGR042G0281 Punica granatum HOM05D005162 ORTHO05D007064 3.7e-143 511.9 310 80.6
Cfa005485 Carpinus fangiana HOM05D005162 ORTHO05D007064 4.8e-143 511.5 328 76.8
Sp7g16990 Schrenkiella parvula HOM05D005162 ORTHO05D007064 6.2e-143 511.1 315 78.7
BraA01t01942Z Brassica rapa HOM05D005162 ORTHO05D007064 1.4e-142 510.0 333 74.8
QL02p099940 Quercus lobata HOM05D005162 ORTHO05D007064 1.4e-142 510.0 314 78.3
MD15G1431000 Malus domestica HOM05D005162 ORTHO05D007064 1.8e-142 509.6 318 76.1
BolC1t02482H Brassica oleracea HOM05D005162 ORTHO05D007064 5.3e-142 508.1 312 78.8
BcaC09g50447 Brassica carinata HOM05D005162 ORTHO05D007064 6.9e-142 507.7 315 78.1
C01p25320 Brassica napus HOM05D005162 ORTHO05D007064 6.9e-142 507.7 315 78.1
Lalb_Chr07g0185841 Lupinus albus HOM05D005162 ORTHO05D007064 6.9e-142 507.7 319 76.2
CSS0000837 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 2.6e-141 505.8 326 76.7
Lj4g0017883 Lotus japonicus HOM05D005162 ORTHO05D007064 2.6e-141 505.8 314 77.1
Thhalv10025663m.g Eutrema salsugineum HOM05D005162 ORTHO05D007064 3.4e-141 505.4 315 77.8
TPR.G6800 Trifolium pratense HOM05D005162 ORTHO05D007064 3.4e-141 505.4 327 76.1
AUR62041110 Chenopodium quinoa HOM05D005162 ORTHO05D007064 4.5e-141 505.0 364 69.5
Prupe.1G576000 Prunus persica HOM05D005162 ORTHO05D007064 5.8e-141 504.6 319 75.5
Sabra01G0166400 Salix brachista HOM05D005162 ORTHO05D007064 7.6e-141 504.2 363 70.8
Sopen01g046230 Solanum pennellii HOM05D005162 ORTHO05D007064 7.6e-141 504.2 323 76.2
Aa31LG3G14040 Aethionema arabicum HOM05D005162 ORTHO05D007064 1.0e-140 503.8 319 77.1
Carub.0006s2628 Capsella rubella HOM05D005162 ORTHO05D007064 1.0e-140 503.8 319 76.8
PGSC0003DMG400024901 Solanum tuberosum HOM05D005162 ORTHO05D007064 1.3e-140 503.4 323 76.2
Cpa.g.sc38.29 Carica papaya HOM05D005162 ORTHO05D007064 1.7e-140 503.1 318 76.1
Phvul.002G248400 Phaseolus vulgaris HOM05D005162 ORTHO05D007064 1.7e-140 503.1 332 74.7
Potri.003G011300 Populus trichocarpa HOM05D005162 ORTHO05D007064 2.2e-140 502.7 325 76.3
Psat7g063440 Pisum sativum HOM05D005162 ORTHO05D007064 2.9e-140 502.3 327 75.5
Solyc01g103850.4 Solanum lycopersicum HOM05D005162 ORTHO05D007064 2.9e-140 502.3 323 75.9
AL6G41220 Arabidopsis lyrata HOM05D005162 ORTHO05D007064 4.9e-140 501.5 315 77.1
AT4G06599 Arabidopsis thaliana HOM05D005162 ORTHO05D007064 1.4e-139 500.0 315 76.5
Ca_17836_v3 Cicer arietinum L. HOM05D005162 ORTHO05D007064 4.2e-139 498.4 326 75.8
Glyma.05G168000 Glycine max HOM05D005162 ORTHO05D007064 4.2e-139 498.4 320 75.0
unitig_749.g14130 Utricularia gibba HOM05D005162 ORTHO05D007064 1.6e-138 496.5 318 74.8
VMungo0251G3523 Vigna mungo HOM05D005162 ORTHO05D007064 2.7e-138 495.7 319 74.6
Sabra03G0007400 Salix brachista HOM05D005162 ORTHO05D007064 3.5e-138 495.4 323 76.8
Sabra03G0006800 Salix brachista HOM05D005162 ORTHO05D007064 4.6e-138 495.0 323 76.8
CARHR287310 Cardamine hirsuta HOM05D005162 ORTHO05D007064 7.9e-138 494.2 327 74.6
Medtr8g088640 Medicago truncatula HOM05D005162 ORTHO05D007064 1.3e-137 493.4 326 74.5
Nitab4.5_0000948g0210 Nicotiana tabacum HOM05D005162 ORTHO05D007064 1.3e-137 493.4 369 67.5
SMO358G0515 Selaginella moellendorffii HOM05D005162 ORTHO05D007064 1.8e-137 493.0 326 74.2
Rhsim11G0126200 Rhododendron simsii HOM05D005162 ORTHO05D007064 1.5e-136 490.0 367 67.3
BcaNung03473 Brassica carinata HOM05D005162 ORTHO05D007064 4.3e-136 488.4 300 79.7
Glyma.08G126400 Glycine max HOM05D005162 ORTHO05D007064 4.3e-136 488.4 324 72.5
TWI59G0454 Tripterygium wilfordii HOM05D005162 ORTHO05D007064 2.1e-135 486.1 310 78.1
Migut.B00805 Erythranthe guttata HOM05D005162 ORTHO05D007064 3.7e-135 485.3 329 72.3
SGA_v2.0_scaffold338G49226 Striga asiatica HOM05D005162 ORTHO05D007064 2.4e-134 482.6 310 74.8
Haze_01819 Corylus avellana HOM05D005162 ORTHO05D007064 5.3e-134 481.5 394 64.2
Actinidia39017 Actinidia chinensis HOM05D005162 ORTHO05D007064 4.5e-133 478.4 332 72.6
Dinv01848 Davidia involucrata HOM05D005162 ORTHO05D007064 2.2e-132 476.1 322 75.5
CDE08G1137 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 5.5e-131 471.5 307 75.6
CSS0029208 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 1.0e-129 467.2 326 72.4
Os01g0875400 Oryza sativa ssp. japonica HOM05D005162 ORTHO05D007064 1.5e-128 463.4 316 72.5
Mapoly0019s0035 Marchantia polymorpha HOM05D005162 ORTHO05D007064 3.7e-127 458.8 311 73.3
Nitab4.5_0002698g0020 Nicotiana tabacum HOM05D005162 ORTHO05D007064 1.2e-125 453.8 332 67.8
BcaNung00113 Brassica carinata HOM05D005162 ORTHO05D007064 2.6e-125 452.6 333 69.1
Zm00001eb366430 Zea mays HOM05D005162 ORTHO05D007064 7.7e-125 451.1 330 67.6
Pp3c1_27970 Physcomitrium patens HOM05D005162 ORTHO05D007064 1.6e-122 443.4 330 65.8
Oeu032113.1 Olea europaea HOM05D005162 ORTHO05D007064 2.4e-118 429.5 242 83.5
GSVIVG01023290001 Vitis vinifera HOM05D005162 ORTHO05D007064 2.0e-117 426.4 242 84.7
HanXRQChr10g0294691 Helianthus annuus HOM05D005162 ORTHO05D007064 5.9e-117 424.9 238 85.3
Lj5C260G15 Lonicera japonica HOM05D005162 ORTHO05D007064 2.7e-114 416.0 237 83.1
CDE08G1585 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 9.7e-112 407.5 302 68.9
vmacro01733 Vaccinium macrocarpon HOM05D005162 ORTHO05D007064 2.8e-111 406.0 242 79.3
MBI09_g07124_MAGBIO Magnolia biondii HOM05D005162 ORTHO05D007064 9.1e-110 401.0 330 66.4
Sabra03G0007100 Salix brachista HOM05D005162 ORTHO05D007064 5.2e-105 385.2 363 59.5
EL10Ac6g13975 Beta vulgaris HOM05D005162 ORTHO05D007064 6.7e-105 384.8 324 62.0
CsaV3_5G029930 Cucumis sativus L. HOM05D005162 ORTHO05D007064 4.8e-103 378.6 316 61.4
CAN.G798.38 Capsicum annuum HOM05D005162 ORTHO05D007064 6.3e-103 378.3 233 75.1
MCO16G506 Micromonas commoda HOM05D005162 ORTHO05D007064 8.8e-97 357.8 313 59.7
SEGI_09590 Sequoiadendron giganteum HOM05D005162 ORTHO05D007064 1.8e-94 350.1 189 86.2
BcaNung03475 Brassica carinata HOM05D005162 ORTHO05D007064 1.9e-83 313.5 233 67.8
Haze_26359 Corylus avellana HOM05D005162 ORTHO05D007064 8.0e-74 281.6 331 45.3
CBR_g37945 Chara braunii HOM05D005162 ORTHO05D000497 1.4e-70 270.8 193 65.8
Lsat_1_v5_gn_1_60880 Lactuca sativa HOM05D005162 ORTHO05D007064 1.6e-69 267.3 215 67.4
Cre04.g228900 Chlamydomonas reinhardtii HOM05D005162 ORTHO05D007064 3.0e-68 263.1 267 50.6
PRCOL_00006478 Prasinoderma coloniale HOM05D005162 ORTHO05D007064 1.1e-65 254.6 298 49.0
Oeu049835.1 Olea europaea HOM05D005162 ORTHO05D007064 1.7e-60 237.3 127 83.5
AagrBONN_evm.TU.Sc2ySwM_368.1617 Anthoceros agrestis HOM05D005162 ORTHO05D007064 5.1e-60 235.7 245 53.1
Hma1.2p1_1108F.1_g257830 Hydrangea macrophylla HOM05D005162 ORTHO05D007064 6.6e-60 235.3 129 82.9
EL10As26g24245 Beta vulgaris HOM05D005162 ORTHO05D007064 6.4e-55 218.8 122 82.8
FAN14G4428 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.4e-41 173.7 126 67.5
FvH4_6g22010 Fragaria vesca HOM05D005162 ORTHO05D007064 6.9e-41 172.2 126 66.7
FvH4_1g28920 Fragaria vesca HOM05D005162 ORTHO05D012874 2.4e-38 163.7 121 65.3
FAN06G2257 Fragaria x ananassa HOM05D005162 ORTHO05D007064 7.1e-38 162.2 119 66.4
FAN06G4878 Fragaria x ananassa HOM05D005162 ORTHO05D007064 7.1e-38 162.2 119 66.4
FvH4_7g16790 Fragaria vesca HOM05D005162 ORTHO05D007064 7.9e-37 158.7 119 64.7
FAN09G4282 Fragaria x ananassa HOM05D005162 ORTHO05D007064 7.9e-37 158.7 135 60.7
CBR_g37944 Chara braunii HOM05D000019 ORTHO05D000048 6.7e-36 155.6 162 49.4
EL10Ac9g22557 Beta vulgaris HOM05D005162 ORTHO05D007064 8.7e-36 155.2 100 77.0
Lsat_1_v5_gn_1_60640 Lactuca sativa HOM05D005162 ORTHO05D007064 2.9e-31 140.2 200 46.5
MD08G1239400 Malus domestica HOM05D005162 ORTHO05D007064 4.2e-30 136.3 101 63.4
FvH4_7g16160 Fragaria vesca HOM05D005162 ORTHO05D007064 5.3e-25 119.4 93 62.4
Zm00001eb146120 Zea mays HOM05D005162 ORTHO05D007064 1.2e-24 118.2 75 74.7
BraA03t14123Z Brassica rapa HOM05D005162 ORTHO05D007064 4.9e-23 112.8 73 72.6
Lsat_1_v5_gn_1_60800 Lactuca sativa HOM05D005162 ORTHO05D007064 3.3e-19 100.1 197 39.1
MD08G1239500 Malus domestica HOM05D005162 ORTHO05D007064 1.8e-17 94.4 60 73.3
Haze_10322 Corylus avellana HOM05D002370 ORTHO05D003878 2.4e-17 94.0 71 69.0
Solyc01g058590.1 Solanum lycopersicum HOM05D005162 ORTHO05D027610 2.2e-15 87.4 70 61.4
C07p48650 Brassica napus HOM05D005162 ORTHO05D007064 1.1e-14 85.1 67 70.1
Sopen01g024260 Solanum pennellii HOM05D005162 ORTHO05D027610 2.7e-13 80.5 87 51.7
Cfa012958 Carpinus fangiana HOM05D005162 ORTHO05D027610 1.1e-11 75.1 53 66.0
BcaB01g02499 Brassica carinata HOM05D005162 ORTHO05D027610 5.7e-11 72.8 77 54.5
BcaB07g32185 Brassica carinata HOM05D005162 ORTHO05D000065 8.2e-10 68.9 74 52.7
CDE02G4559 Ceratophyllum demersum HOM05D000243 ORTHO05D000278 1.2e-08 65.1 54 64.8
SMO115G0039 Selaginella moellendorffii HOM05D005162 ORTHO05D376677 4.5e-08 63.2 164 31.1
SMO115G0326 Selaginella moellendorffii HOM05D011895 ORTHO05D374257 4.5e-08 63.2 164 29.9
BcaB05g22040 Brassica carinata HOM05D005162 ORTHO05D094949 2.2e-07 60.8 95 41.1
LjContig00141g0011565 Lotus japonicus HOM05D005162 ORTHO05D236084 2.2e-07 60.8 61 57.4
Aqoxy3G03673 Aquilegia oxysepala HOM05D000874 ORTHO05D001049 4.2e-06 56.6 169 26.0


User provided reference genes

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