Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1134G026 Amborella trichopoda HOM05D004212 ORTHO05D005128 5.6e-167 590.9 300 100.0
CDE02G2360 Ceratophyllum demersum HOM05D004212 ORTHO05D005128 4.4e-79 298.9 301 51.5
TAR633G1640 Trochodendron aralioides HOM05D004212 ORTHO05D005128 2.7e-76 289.7 300 53.0
Thecc.05G029300 Theobroma cacao HOM05D004212 ORTHO05D005128 3.2e-74 282.7 301 51.2
Solyc09g011450.4 Solanum lycopersicum HOM05D004212 ORTHO05D005128 1.4e-72 277.3 301 51.2
GSVIVG01034068001 Vitis vinifera HOM05D004212 ORTHO05D005128 4.0e-72 275.8 298 52.7
Nn2g11289 Nelumbo nucifera HOM05D004212 ORTHO05D005128 6.8e-72 275.0 303 50.2
Sopen09g006170 Solanum pennellii HOM05D004212 ORTHO05D005128 8.8e-72 274.6 301 50.8
HPP92_005893 Vanilla planifolia HOM05D004212 ORTHO05D005128 2.0e-71 273.5 298 50.3
Gorai.002G255500 Gossypium raimondii HOM05D004212 ORTHO05D005128 2.8e-70 269.6 300 50.3
Gohir.D01G209900 Gossypium hirsutum HOM05D004212 ORTHO05D005128 3.7e-70 269.2 300 50.3
CANSAT35G0035 Cannabis sativa HOM05D004212 ORTHO05D005128 5.4e-69 265.4 301 49.8
CsaV3_4G025590 Cucumis sativus L. HOM05D004212 ORTHO05D005128 7.0e-69 265.0 316 49.1
Cc06_g02090 Coffea canephora HOM05D004212 ORTHO05D005128 9.1e-69 264.6 304 49.7
Ca_07566_v3 Cicer arietinum L. HOM05D004212 ORTHO05D005128 2.0e-68 263.5 304 48.7
MELO3C003185.2 Cucumis melo HOM05D004212 ORTHO05D005128 2.0e-68 263.5 316 48.7
Peaxi162Scf00975g00132 Petunia axillaris HOM05D004212 ORTHO05D005128 3.5e-68 262.7 306 50.0
Oeu001834.1 Olea europaea HOM05D004212 ORTHO05D005128 4.5e-68 262.3 303 49.8
Eucgr.K03043 Eucalyptus grandis HOM05D004212 ORTHO05D005128 7.7e-68 261.5 295 48.5
TWI74G0733 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 1.7e-67 260.4 317 48.3
Gohir.A01G221000 Gossypium hirsutum HOM05D004212 ORTHO05D005128 3.8e-67 259.2 300 49.0
Glyma.09G059100 Glycine max HOM05D004212 ORTHO05D005128 6.5e-67 258.5 301 51.2
TWI53G1663 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 6.5e-67 258.5 314 47.5
Cfa010180 Carpinus fangiana HOM05D004212 ORTHO05D005128 8.5e-67 258.1 303 48.5
ClCG04G007620 Citrullus lanatus HOM05D004212 ORTHO05D005128 1.1e-66 257.7 316 47.5
FAN12G3486 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.1e-66 257.7 299 51.2
Glyma.15G165200 Glycine max HOM05D004212 ORTHO05D005128 1.1e-66 257.7 298 50.0
Sed0021611 Sechium edule HOM05D004212 ORTHO05D005128 1.1e-66 257.7 309 48.9
PGSC0003DMG400024265 Solanum tuberosum HOM05D004212 ORTHO05D005128 2.5e-66 256.5 324 48.1
FAN12G2442 Fragaria x ananassa HOM05D004212 ORTHO05D005128 4.2e-66 255.8 299 50.8
Nitab4.5_0008116g0030 Nicotiana tabacum HOM05D004212 ORTHO05D005128 4.2e-66 255.8 303 50.2
Sc22g0004390 Simmondsia chinensis HOM05D004212 ORTHO05D005128 4.2e-66 255.8 298 50.3
CiPaw.09G201200 Carya illinoinensis HOM05D004212 ORTHO05D005128 5.5e-66 255.4 310 45.5
COL.COLO4_14697 Corchorus olitorius HOM05D004212 ORTHO05D005128 5.5e-66 255.4 301 46.8
Haze_20882 Corylus avellana HOM05D004212 ORTHO05D005128 7.2e-66 255.0 332 46.7
Manes.09G098300 Manihot esculenta HOM05D004212 ORTHO05D005128 7.2e-66 255.0 304 50.0
Aqoxy4G03223 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 9.4e-66 254.6 298 48.0
DCAR_028811 Daucus carota HOM05D004212 ORTHO05D005128 9.4e-66 254.6 305 48.5
Lalb_Chr03g0042691 Lupinus albus HOM05D004212 ORTHO05D005128 1.2e-65 254.2 300 47.0
Haze_20891 Corylus avellana HOM05D004212 ORTHO05D005128 2.1e-65 253.4 332 46.4
Psat3g133560 Pisum sativum HOM05D004212 ORTHO05D005128 2.1e-65 253.4 302 47.7
MSTRG.10244 Avicennia marina HOM05D004212 ORTHO05D005128 2.7e-65 253.1 302 48.3
Aqoxy7G01126 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 3.6e-65 252.7 298 47.7
Migut.J00264 Erythranthe guttata HOM05D004212 ORTHO05D005128 8.0e-65 251.5 301 49.2
CSS0007767 Camellia sinensis var. sinensis HOM05D004212 ORTHO05D005128 1.0e-64 251.1 299 47.8
RcHm_v2.0_Chr4g0406841 Rosa chinensis HOM05D004212 ORTHO05D005128 1.0e-64 251.1 300 51.7
VMungo0540G1009 Vigna mungo HOM05D004212 ORTHO05D005128 1.0e-64 251.1 298 50.3
Lalb_Chr19g0125041 Lupinus albus HOM05D004212 ORTHO05D005128 2.3e-64 250.0 301 46.5
SalBow7G2619 Salvia bowleyana HOM05D004212 ORTHO05D005128 2.3e-64 250.0 306 48.7
FAN07G0792 Fragaria x ananassa HOM05D004212 ORTHO05D005128 4.0e-64 249.2 299 49.8
THA.LOC104806541 Tarenaya hassleriana HOM05D004212 ORTHO05D005128 1.5e-63 247.3 304 49.0
TPR.G34923 Trifolium pratense HOM05D004212 ORTHO05D005128 2.6e-63 246.5 306 47.4
Hma1.2p1_0671F.1_g200560 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 1.3e-62 244.2 302 51.7
Carub.0005s2056 Capsella rubella HOM05D004212 ORTHO05D005128 2.8e-62 243.0 306 48.7
Lj1g0008590 Lotus japonicus HOM05D004212 ORTHO05D005128 4.9e-62 242.3 311 46.9
Phvul.006G149300 Phaseolus vulgaris HOM05D004212 ORTHO05D005128 1.8e-61 240.4 308 45.5
ECA236G3305 Erigeron canadensis HOM05D004212 ORTHO05D005128 3.1e-61 239.6 300 46.0
Atru.chr8.2089 Acer truncatum HOM05D004212 ORTHO05D005128 4.1e-61 239.2 300 45.7
Prupe.6G264400 Prunus persica HOM05D004212 ORTHO05D005128 4.1e-61 239.2 310 50.0
Rhsim05G0199700 Rhododendron simsii HOM05D004212 ORTHO05D005128 5.4e-61 238.8 306 52.0
Aa31LG10G8930 Aethionema arabicum HOM05D004212 ORTHO05D005128 1.6e-60 237.3 300 48.0
Mapoly0013s0005 Marchantia polymorpha HOM05D004212 ORTHO05D005128 1.6e-60 237.3 309 45.0
Lsat_1_v5_gn_8_84101 Lactuca sativa HOM05D004212 ORTHO05D005128 2.7e-60 236.5 302 45.4
HanXRQChr04g0124481 Helianthus annuus HOM05D004212 ORTHO05D005128 5.9e-60 235.3 306 44.1
Zm00001eb323600 Zea mays HOM05D004212 ORTHO05D005128 7.7e-60 235.0 300 43.3
vmacro20195 Vaccinium macrocarpon HOM05D004212 ORTHO05D005128 1.0e-59 234.6 308 48.4
AT3G53970 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 1.3e-59 234.2 304 47.0
EL10Ac3g05638 Beta vulgaris HOM05D004212 ORTHO05D005128 1.3e-59 234.2 308 47.7
PGR004G1844 Punica granatum HOM05D004212 ORTHO05D005128 1.7e-59 233.8 319 46.4
unitig_62.g23469 Utricularia gibba HOM05D004212 ORTHO05D005128 2.9e-59 233.0 299 45.8
AUR62021188 Chenopodium quinoa HOM05D004212 ORTHO05D005128 8.6e-59 231.5 306 50.0
QL07p028338 Quercus lobata HOM05D004212 ORTHO05D005128 8.6e-59 231.5 305 47.9
arahy.Tifrunner.gnm1.ann1.59HWIF Arachis hypogaea HOM05D004212 ORTHO05D005128 1.1e-58 231.1 304 46.4
AL5G34970 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 2.5e-58 229.9 304 47.0
arahy.Tifrunner.gnm1.ann1.PUF7HK Arachis hypogaea HOM05D004212 ORTHO05D005128 3.3e-58 229.6 308 46.4
MD12G1154600 Malus domestica HOM05D004212 ORTHO05D005128 3.3e-58 229.6 307 49.2
Os07g0548900 Oryza sativa ssp. japonica HOM05D004212 ORTHO05D005128 9.5e-58 228.0 302 41.7
CARHR163870 Cardamine hirsuta HOM05D004212 ORTHO05D005128 2.1e-57 226.9 313 45.4
Ciclev10021036m.g Citrus clementina HOM05D004212 ORTHO05D005128 2.1e-57 226.9 300 47.3
arahy.Tifrunner.gnm1.ann1.77ZQ01 Arachis hypogaea HOM05D004212 ORTHO05D005128 3.6e-57 226.1 305 45.6
Duzib093G0395 Durio zibethinus HOM05D004212 ORTHO05D005128 4.7e-57 225.7 301 45.5
MD04G1138800 Malus domestica HOM05D004212 ORTHO05D005128 4.7e-57 225.7 309 48.2
arahy.Tifrunner.gnm1.ann1.MS11WY Arachis hypogaea HOM05D004212 ORTHO05D005128 6.1e-57 225.3 308 46.1
Potri.016G103800 Populus trichocarpa HOM05D004212 ORTHO05D005128 6.1e-57 225.3 300 44.7
Hund00715 Selenicereus undatus HOM05D004212 ORTHO05D005128 1.0e-56 224.6 302 47.7
AUR62015980 Chenopodium quinoa HOM05D004212 ORTHO05D005128 1.4e-56 224.2 306 49.7
Medtr7g065120 Medicago truncatula HOM05D004212 ORTHO05D005128 3.0e-56 223.0 303 43.9
Sabra16G0103700 Salix brachista HOM05D004212 ORTHO05D005128 4.0e-56 222.6 300 44.7
PSO339G0401 Papaver somniferum HOM05D004212 ORTHO05D005128 8.9e-56 221.5 306 45.8
PSO384G5122 Papaver somniferum HOM05D004212 ORTHO05D005128 1.5e-55 220.7 305 45.9
BcaB02g07758 Brassica carinata HOM05D004212 ORTHO05D005128 3.4e-55 219.5 306 47.4
Dinv35542 Davidia involucrata HOM05D004212 ORTHO05D005128 5.7e-55 218.8 258 49.6
BolC6t37364H Brassica oleracea HOM05D004212 ORTHO05D005128 7.5e-55 218.4 302 48.0
Ciclev10012365m.g Citrus clementina HOM05D004212 ORTHO05D005128 1.7e-54 217.2 296 45.6
BraA07t29869Z Brassica rapa HOM05D004212 ORTHO05D005128 2.2e-54 216.9 304 47.4
BcaC08g44655 Brassica carinata HOM05D004212 ORTHO05D005128 3.7e-54 216.1 302 47.7
A07p21880 Brassica napus HOM05D004212 ORTHO05D005128 3.7e-54 216.1 304 47.4
C06p21750 Brassica napus HOM05D004212 ORTHO05D005128 3.7e-54 216.1 302 47.7
Thhalv10010577m.g Eutrema salsugineum HOM05D004212 ORTHO05D005128 1.0e-51 208.0 307 45.0
Nn2g13527 Nelumbo nucifera HOM05D004212 ORTHO05D005128 1.3e-51 207.6 257 47.5
Sp5g08430 Schrenkiella parvula HOM05D004212 ORTHO05D005128 1.3e-51 207.6 305 46.2
arahy.Tifrunner.gnm1.ann1.SP0BHI Arachis hypogaea HOM05D004212 ORTHO05D005128 8.6e-51 204.9 278 46.8
SEGI_10222 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 1.1e-50 204.5 193 54.4
SGA_v2.0_scaffold673G53429 Striga asiatica HOM05D004212 ORTHO05D005128 3.6e-49 199.5 241 49.4
Pp3c12_26190 Physcomitrium patens HOM05D004212 ORTHO05D005128 1.0e-48 198.0 308 40.9
Actinidia29168 Actinidia chinensis HOM05D004212 ORTHO05D005128 1.5e-47 194.1 311 43.1
FvH4_4g10740 Fragaria vesca HOM05D004212 ORTHO05D005128 2.9e-46 189.9 241 48.1
Lj2C86T9 Lonicera japonica HOM05D004212 ORTHO05D005128 2.4e-45 186.8 290 44.1
FAN05G0076 Fragaria x ananassa HOM05D004212 ORTHO05D005128 3.9e-43 179.5 329 39.5
FvH4_6g12740 Fragaria vesca HOM05D004212 ORTHO05D005128 1.1e-42 177.9 327 38.8
Oeu021128.1 Olea europaea HOM05D004212 ORTHO05D005128 1.9e-42 177.2 396 34.3
FAN14G3630 Fragaria x ananassa HOM05D004212 ORTHO05D005128 4.3e-42 176.0 334 38.6
SMO115G0073 Selaginella moellendorffii HOM05D004212 ORTHO05D005128 6.8e-40 168.7 306 39.5
CBR_g46706 Chara braunii HOM05D004212 ORTHO05D005128 7.5e-39 165.2 359 37.0
RcHm_v2.0_Chr3g0464661 Rosa chinensis HOM05D004212 ORTHO05D005128 9.8e-39 164.9 328 36.9
CAN.G697.3 Capsicum annuum HOM05D004212 ORTHO05D005128 9.5e-34 148.3 181 47.5
Lj4g0027540 Lotus japonicus HOM05D004212 ORTHO05D005128 9.5e-34 148.3 264 40.9
FAN09G1025 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.2e-31 141.4 149 49.7
A09p46880 Brassica napus HOM05D004212 ORTHO05D005128 2.0e-31 140.6 303 35.0
Carub.0003s2694 Capsella rubella HOM05D004212 ORTHO05D005128 9.9e-31 138.3 178 45.5
PSO421G0231 Papaver somniferum HOM05D004212 ORTHO05D005128 1.3e-30 137.9 157 47.8
PSO104G0021 Papaver somniferum HOM05D004212 ORTHO05D005128 1.7e-30 137.5 158 47.5
BraA09t40156Z Brassica rapa HOM05D004212 ORTHO05D005128 2.9e-30 136.7 312 34.0
PSO104G0091 Papaver somniferum HOM05D004212 ORTHO05D005128 4.9e-30 136.0 173 45.1
PSO104G0005 Papaver somniferum HOM05D004212 ORTHO05D005128 8.4e-30 135.2 173 45.1
RcHm_v2.0_Chr4g0419261 Rosa chinensis HOM05D004212 ORTHO05D005128 4.1e-29 132.9 229 39.7
BcaB01g00227 Brassica carinata HOM05D004212 ORTHO05D005128 1.0e-27 128.3 250 36.8
AL3G43180 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 5.1e-27 125.9 174 43.1
SEGI_17127 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 1.1e-26 124.8 110 60.0
AL3G43230 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 2.5e-26 123.6 176 41.5
Hma1.2p1_0097F.1_g048000 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 1.2e-25 121.3 118 55.9
AT1G48530 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 1.6e-25 120.9 170 42.4
BcaB02g08498 Brassica carinata HOM05D004212 ORTHO05D005128 1.8e-24 117.5 277 31.8
Prupe.6G304800 Prunus persica HOM05D004212 ORTHO05D005128 2.9e-22 110.2 151 43.0
Lj3C960G5 Lonicera japonica HOM05D004212 ORTHO05D005128 1.1e-21 108.2 118 49.2
arahy.Tifrunner.gnm1.ann1.U24FMU Arachis hypogaea HOM05D004212 ORTHO05D005128 5.4e-21 105.9 104 51.9
arahy.Tifrunner.gnm1.ann1.MGHR3Z Arachis hypogaea HOM05D004212 ORTHO05D005128 2.7e-20 103.6 118 47.5
MD12G1200000 Malus domestica HOM05D004212 ORTHO05D005128 3.5e-20 103.2 192 38.0
MD17G1162600 Malus domestica HOM05D004212 ORTHO05D005128 3.0e-19 100.1 163 39.9
CAN.G697.2 Capsicum annuum HOM05D004212 ORTHO05D005128 1.5e-18 97.8 101 55.4
Duzib106G0220 Durio zibethinus HOM05D004212 ORTHO05D005128 4.3e-18 96.3 100 55.0
C08p29190 Brassica napus HOM05D004212 ORTHO05D005128 7.3e-18 95.5 270 30.7
BcaC07g39746 Brassica carinata HOM05D004212 ORTHO05D005128 1.3e-17 94.7 270 30.4
BolC8t50520H Brassica oleracea HOM05D004212 ORTHO05D005128 2.1e-17 94.0 270 30.4
Cfa009861 Carpinus fangiana HOM05D004212 ORTHO05D005128 2.1e-17 94.0 258 31.0
RcHm_v2.0_Chr4g0416021 Rosa chinensis HOM05D004212 ORTHO05D005128 4.2e-13 79.7 148 37.2
BcaC02g09118 Brassica carinata HOM05D004212 ORTHO05D005128 7.9e-12 75.5 71 52.1
AagrBONN_evm.TU.Sc2ySwM_344.2315 Anthoceros agrestis HOM05D004212 ORTHO05D005128 2.8e-09 67.0 179 31.8
Cre07.g331000 Chlamydomonas reinhardtii HOM05D004212 ORTHO05D005128 9.0e-08 62.0 187 27.8
MCO11G019 Micromonas commoda HOM05D004212 ORTHO05D005128 9.0e-08 62.0 322 26.7
BolC6t39520H Brassica oleracea HOM05D004212 ORTHO05D005128 9.9e-07 58.5 107 32.7
TAR633G2132 Trochodendron aralioides HOM05D004212 ORTHO05D005128 9.9e-07 58.5 47 61.7


User provided reference genes

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