Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1133G060 Amborella trichopoda HOM05D000410 ORTHO05D007231 2.2e-82 308.9 154 100.0
Nn5g30271 Nelumbo nucifera HOM05D000410 ORTHO05D007231 5.1e-15 85.1 144 42.4
Manes.05G175100 Manihot esculenta HOM05D000410 ORTHO05D007231 8.7e-15 84.3 95 57.9
MBI03_g26567_MAGBIO Magnolia biondii HOM05D000410 ORTHO05D007231 1.1e-14 84.0 93 53.8
Nn1g04826 Nelumbo nucifera HOM05D000410 ORTHO05D007231 3.3e-14 82.4 114 49.1
Sed0020877 Sechium edule HOM05D000410 ORTHO05D007231 7.3e-14 81.3 137 44.5
Rhsim06G0051600 Rhododendron simsii HOM05D000410 ORTHO05D007231 9.6e-14 80.9 87 58.6
Nn1g02716 Nelumbo nucifera HOM05D000410 ORTHO05D007231 1.6e-13 80.1 83 57.8
THA.LOC104814170 Tarenaya hassleriana HOM05D000410 ORTHO05D007231 1.6e-13 80.1 112 46.4
AT1G45976 Arabidopsis thaliana HOM05D000410 ORTHO05D007231 2.8e-13 79.3 97 52.6
Manes.18G038702 Manihot esculenta HOM05D000410 ORTHO05D007231 2.8e-13 79.3 90 56.7
MELO3C016766.2 Cucumis melo HOM05D000410 ORTHO05D007231 3.6e-13 79.0 136 44.9
Glyma.17G241100 Glycine max HOM05D000410 ORTHO05D007231 4.8e-13 78.6 110 50.0
Actinidia23290 Actinidia chinensis HOM05D000410 ORTHO05D007231 6.2e-13 78.2 115 50.4
CsaV3_4G034480 Cucumis sativus L. HOM05D000410 ORTHO05D007231 6.2e-13 78.2 136 44.9
ClCG05G020020 Citrullus lanatus HOM05D000410 ORTHO05D007231 8.1e-13 77.8 82 59.8
Dinv39303 Davidia involucrata HOM05D000410 ORTHO05D007231 8.1e-13 77.8 90 55.6
Nitab4.5_0000287g0150 Nicotiana tabacum HOM05D000410 ORTHO05D007231 8.1e-13 77.8 135 42.2
Nitab4.5_0007949g0020 Nicotiana tabacum HOM05D000410 ORTHO05D007231 1.1e-12 77.4 135 42.2
Potri.014G027000 Populus trichocarpa HOM05D000410 ORTHO05D007231 1.1e-12 77.4 99 50.5
Phvul.001G023100 Phaseolus vulgaris HOM05D000410 ORTHO05D007231 1.4e-12 77.0 95 52.6
VMungo0647G0850 Vigna mungo HOM05D000410 ORTHO05D007231 1.4e-12 77.0 95 52.6
Ciclev10001290m.g Citrus clementina HOM05D000410 ORTHO05D007231 1.8e-12 76.6 92 53.3
QL02p004459 Quercus lobata HOM05D000410 ORTHO05D007231 1.8e-12 76.6 113 50.4
Peaxi162Scf00503g00111 Petunia axillaris HOM05D000410 ORTHO05D007231 2.4e-12 76.3 135 43.7
TWI36G1403 Tripterygium wilfordii HOM05D000410 ORTHO05D007231 2.4e-12 76.3 91 54.9
Dinv35943 Davidia involucrata HOM05D000410 ORTHO05D007231 3.1e-12 75.9 101 51.5
COL.COLO4_26532 Corchorus olitorius HOM05D000410 ORTHO05D007231 4.0e-12 75.5 96 56.2
Medtr1g019250 Medicago truncatula HOM05D000410 ORTHO05D007231 5.3e-12 75.1 90 53.3
Psat6g012880 Pisum sativum HOM05D000410 ORTHO05D007231 5.3e-12 75.1 90 53.3
AL1G53210 Arabidopsis lyrata HOM05D000410 ORTHO05D007231 6.9e-12 74.7 97 49.5
CARHR036570 Cardamine hirsuta HOM05D000410 ORTHO05D007231 9.0e-12 74.3 113 46.9
Cpa.g.sc49.33 Carica papaya HOM05D000410 ORTHO05D007231 1.2e-11 73.9 95 54.7
Ca_13284_v3 Cicer arietinum L. HOM05D000410 ORTHO05D007231 1.2e-11 73.9 90 52.2
Gohir.A05G203600 Gossypium hirsutum HOM05D000410 ORTHO05D007231 1.2e-11 73.9 98 54.1
Gohir.D05G206700 Gossypium hirsutum HOM05D000410 ORTHO05D007231 1.2e-11 73.9 98 54.1
Gorai.009G213200 Gossypium raimondii HOM05D000410 ORTHO05D007231 1.2e-11 73.9 98 54.1
Hma1.2p1_0360F.1_g135630 Hydrangea macrophylla HOM05D000410 ORTHO05D007231 1.2e-11 73.9 82 56.1
Lj5g0018177 Lotus japonicus HOM05D000410 ORTHO05D007231 1.2e-11 73.9 90 52.2
MD08G1098300 Malus domestica HOM05D000410 ORTHO05D007231 1.2e-11 73.9 83 55.4
SEGI_26056 Sequoiadendron giganteum HOM05D000410 ORTHO05D007231 1.2e-11 73.9 97 46.4
GSVIVG01009476001 Vitis vinifera HOM05D000410 ORTHO05D007231 1.2e-11 73.9 87 56.3
Thecc.08G004800 Theobroma cacao HOM05D000410 ORTHO05D007231 1.5e-11 73.6 98 54.1
TPR.G3786 Trifolium pratense HOM05D000410 ORTHO05D007231 1.5e-11 73.6 90 52.2
Duzib116G0812 Durio zibethinus HOM05D000410 ORTHO05D007231 2.0e-11 73.2 92 53.3
Sed0014051 Sechium edule HOM05D000410 ORTHO05D007231 2.0e-11 73.2 82 58.5
arahy.Tifrunner.gnm1.ann1.4SH7KV Arachis hypogaea HOM05D000410 ORTHO05D007231 2.6e-11 72.8 90 52.2
arahy.Tifrunner.gnm1.ann1.BLPL36 Arachis hypogaea HOM05D000410 ORTHO05D007231 2.6e-11 72.8 90 52.2
CiPaw.16G042100 Carya illinoinensis HOM05D000410 ORTHO05D007231 2.6e-11 72.8 90 52.2
Lj4A770T66 Lonicera japonica HOM05D000410 ORTHO05D007231 2.6e-11 72.8 90 55.6
MD15G1080800 Malus domestica HOM05D000410 ORTHO05D007231 2.6e-11 72.8 91 51.6
Glyma.14G083900 Glycine max HOM05D000410 ORTHO05D007231 3.4e-11 72.4 95 50.5
Hma1.2p1_1072F.1_g254150 Hydrangea macrophylla HOM05D000410 ORTHO05D007231 3.4e-11 72.4 112 49.1
THA.LOC104822846 Tarenaya hassleriana HOM05D000410 ORTHO05D007231 3.4e-11 72.4 92 51.1
Carub.0001s3578 Capsella rubella HOM05D000410 ORTHO05D007231 4.5e-11 72.0 93 50.5
Potri.002G124700 Populus trichocarpa HOM05D000410 ORTHO05D007231 5.8e-11 71.6 106 44.3
TAR376G0882 Trochodendron aralioides HOM05D000410 ORTHO05D007231 5.8e-11 71.6 77 57.1
Aa31sc418G20 Aethionema arabicum HOM05D000410 ORTHO05D007231 7.6e-11 71.2 91 51.6
Lsat_1_v5_gn_6_112200 Lactuca sativa HOM05D000410 ORTHO05D007231 7.6e-11 71.2 105 47.6
Lalb_Chr23g0267091 Lupinus albus HOM05D000410 ORTHO05D007231 9.9e-11 70.9 134 37.3
TWI36G0675 Tripterygium wilfordii HOM05D000410 ORTHO05D007231 9.9e-11 70.9 122 44.3
Aqoxy6G01303 Aquilegia oxysepala HOM05D000410 ORTHO05D007231 1.3e-10 70.5 67 59.7
PGSC0003DMG400007961 Solanum tuberosum HOM05D000410 ORTHO05D007231 1.3e-10 70.5 92 51.1
Solyc04g078760.4 Solanum lycopersicum HOM05D000410 ORTHO05D007231 2.2e-10 69.7 91 51.6
Sopen04g032360 Solanum pennellii HOM05D000410 ORTHO05D007231 2.2e-10 69.7 91 51.6
HanXRQChr12g0381361 Helianthus annuus HOM05D000410 ORTHO05D007231 3.8e-10 68.9 120 43.3
Prupe.1G433600 Prunus persica HOM05D000410 ORTHO05D007231 3.8e-10 68.9 83 53.0
Duzib041G0681 Durio zibethinus HOM05D000410 ORTHO05D007231 4.9e-10 68.6 102 50.0
HanXRQChr02g0048761 Helianthus annuus HOM05D000410 ORTHO05D007231 6.4e-10 68.2 124 41.1
HanXRQChr05g0150781 Helianthus annuus HOM05D000410 ORTHO05D007231 6.4e-10 68.2 124 41.1
Sabra02G0097900 Salix brachista HOM05D000410 ORTHO05D007231 1.1e-09 67.4 94 46.8
PGR083G0245 Punica granatum HOM05D000410 ORTHO05D007231 1.9e-09 66.6 82 50.0
DCAR_019443 Daucus carota HOM05D000410 ORTHO05D007231 2.4e-09 66.2 130 38.5
Zm00001eb398070 Zea mays HOM05D000410 ORTHO05D007231 4.2e-09 65.5 128 39.1
Os03g0263800 Oryza sativa ssp. japonica HOM05D000410 ORTHO05D007231 9.3e-09 64.3 133 38.3
BraA10t42934Z Brassica rapa HOM05D000410 ORTHO05D007231 1.2e-08 63.9 108 44.4
Eucgr.F00214 Eucalyptus grandis HOM05D000410 ORTHO05D007231 1.2e-08 63.9 82 48.8
Sc15g0006030 Simmondsia chinensis HOM05D000410 ORTHO05D007231 1.2e-08 63.9 110 43.6
Atru.chr13.714 Acer truncatum HOM05D000410 ORTHO05D007231 1.6e-08 63.5 87 48.3
BcaB07g33867 Brassica carinata HOM05D000410 ORTHO05D007231 1.6e-08 63.5 79 51.9
A10p06750 Brassica napus HOM05D000410 ORTHO05D007231 1.6e-08 63.5 108 44.4
FAN15G3117 Fragaria x ananassa HOM05D000410 ORTHO05D007231 2.1e-08 63.2 91 48.4
PSO210G3694 Papaver somniferum HOM05D000410 ORTHO05D007231 3.5e-08 62.4 114 41.2
RcHm_v2.0_Chr6g0308171 Rosa chinensis HOM05D000410 ORTHO05D007231 3.5e-08 62.4 91 47.3
FvH4_2g34250 Fragaria vesca HOM05D000410 ORTHO05D007231 4.6e-08 62.0 91 47.3
BolC6t35285H Brassica oleracea HOM05D000410 ORTHO05D007231 6.0e-08 61.6 86 50.0
FAN20G0735 Fragaria x ananassa HOM05D000410 ORTHO05D007231 6.0e-08 61.6 91 47.3
FAN24G3277 Fragaria x ananassa HOM05D000410 ORTHO05D007231 6.0e-08 61.6 91 47.3
SalBow6G6926 Salvia bowleyana HOM05D000410 ORTHO05D007231 7.9e-08 61.2 107 43.0
arahy.Tifrunner.gnm1.ann1.0TI1L3 Arachis hypogaea HOM05D000410 ORTHO05D007231 1.0e-07 60.8 94 44.7
arahy.Tifrunner.gnm1.ann1.QCX1RW Arachis hypogaea HOM05D000410 ORTHO05D007231 1.0e-07 60.8 94 44.7
Oeu057281.1 Olea europaea HOM05D000410 ORTHO05D007231 1.3e-07 60.5 109 44.0
Lalb_Chr11g0062561 Lupinus albus HOM05D000410 ORTHO05D007231 1.8e-07 60.1 91 42.9
BcaB04g17557 Brassica carinata HOM05D000410 ORTHO05D007231 2.3e-07 59.7 90 44.4
FAN27G2750 Fragaria x ananassa HOM05D000410 ORTHO05D007231 2.3e-07 59.7 91 46.2
Cc10_g04540 Coffea canephora HOM05D000410 ORTHO05D007231 3.9e-07 58.9 104 42.3
Thhalv10011662m.g Eutrema salsugineum HOM05D000410 ORTHO05D007231 3.9e-07 58.9 82 47.6
BcaC08g42916 Brassica carinata HOM05D000410 ORTHO05D007231 5.1e-07 58.5 86 47.7
MSTRG.22253 Avicennia marina HOM05D000410 ORTHO05D007231 6.7e-07 58.2 108 40.7
Oeu023857.1 Olea europaea HOM05D000410 ORTHO05D007231 8.7e-07 57.8 102 44.1
Zm00001eb011620 Zea mays HOM05D000410 ORTHO05D007231 8.7e-07 57.8 128 37.5
C06p01560 Brassica napus HOM05D000410 ORTHO05D007231 1.9e-06 56.6 86 45.3
Oeu012430.1 Olea europaea HOM05D000410 ORTHO05D007231 1.9e-06 56.6 99 42.4
TAR628G0847 Trochodendron aralioides HOM05D000410 ORTHO05D007231 4.3e-06 55.5 74 48.6
ECA246G3760 Erigeron canadensis HOM05D000410 ORTHO05D007231 9.6e-06 54.3 85 43.5


User provided reference genes

Program Settings