Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1132G073 Amborella trichopoda HOM05D005674 ORTHO05D007015 2.5e-22 110.9 74 100.0
MD07G1055100 Malus domestica HOM05D005674 ORTHO05D007015 5.7e-14 83.2 48 79.2
MD15G1427800 Malus domestica HOM05D005674 ORTHO05D007015 5.7e-14 83.2 48 79.2
Hma1.2p1_0067F.1_g036940 Hydrangea macrophylla HOM05D005674 ORTHO05D007015 1.7e-13 81.6 48 79.2
Prupe.4G280300 Prunus persica HOM05D005674 ORTHO05D007015 2.2e-13 81.3 48 75.0
Cfa012588 Carpinus fangiana HOM05D005674 ORTHO05D007015 3.7e-13 80.5 48 79.2
CSS0001557 Camellia sinensis var. sinensis HOM05D005674 ORTHO05D007015 6.3e-13 79.7 48 77.1
THA.LOC104806715 Tarenaya hassleriana HOM05D005674 ORTHO05D007015 1.1e-12 79.0 46 80.4
Actinidia00858 Actinidia chinensis HOM05D005674 ORTHO05D007015 1.8e-12 78.2 48 75.0
Aa31LG10G3050 Aethionema arabicum HOM05D005674 ORTHO05D007015 2.4e-12 77.8 45 77.8
Nn2g12528 Nelumbo nucifera HOM05D005674 ORTHO05D007015 2.4e-12 77.8 48 75.0
Sp2g11490 Schrenkiella parvula HOM05D005674 ORTHO05D007015 2.4e-12 77.8 45 77.8
Dinv12372 Davidia involucrata HOM05D005674 ORTHO05D007015 3.1e-12 77.4 43 83.7
Gorai.011G295800 Gossypium raimondii HOM05D005674 ORTHO05D007015 3.1e-12 77.4 48 72.9
Lj1P677T28 Lonicera japonica HOM05D005674 ORTHO05D007015 3.1e-12 77.4 48 77.1
Prupe.3G114500 Prunus persica HOM05D005674 ORTHO05D007015 3.1e-12 77.4 48 75.0
MBI15_g37633_MAGBIO Magnolia biondii HOM05D000146 ORTHO05D000178 4.1e-12 77.0 48 72.9
Aa31LG6G670 Aethionema arabicum HOM05D005674 ORTHO05D007015 5.3e-12 76.6 46 73.9
Gohir.D10G254800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 5.3e-12 76.6 48 72.9
TAR627G1060 Trochodendron aralioides HOM05D005674 ORTHO05D007015 7.0e-12 76.3 48 70.8
CANSAT54G2399 Cannabis sativa HOM05D005674 ORTHO05D007015 9.1e-12 75.9 48 70.8
QL08p042254 Quercus lobata HOM05D005674 ORTHO05D007015 9.1e-12 75.9 48 75.0
TWI12G0566 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 9.1e-12 75.9 44 77.3
AL7G36590 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 1.2e-11 75.5 46 76.1
Carub.0007s2342 Capsella rubella HOM05D005674 ORTHO05D007015 1.2e-11 75.5 46 76.1
Ciclev10008244m.g Citrus clementina HOM05D005674 ORTHO05D007015 1.2e-11 75.5 48 72.9
Potri.006G006500 Populus trichocarpa HOM05D005674 ORTHO05D007015 1.2e-11 75.5 48 68.8
Rhsim04G0075800 Rhododendron simsii HOM05D005674 ORTHO05D007015 1.2e-11 75.5 48 72.9
CiPaw.03G192600 Carya illinoinensis HOM05D005674 ORTHO05D007015 1.5e-11 75.1 44 77.3
Thhalv10025145m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 1.5e-11 75.1 46 76.1
Gohir.A10G242800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 1.5e-11 75.1 48 70.8
Sp7g16190 Schrenkiella parvula HOM05D005674 ORTHO05D007015 1.5e-11 75.1 46 76.1
AUR62024049 Chenopodium quinoa HOM05D005674 ORTHO05D007015 2.0e-11 74.7 48 75.0
AUR62040438 Chenopodium quinoa HOM05D005674 ORTHO05D007015 2.0e-11 74.7 48 75.0
Sc04g0009990 Simmondsia chinensis HOM05D005674 ORTHO05D007015 2.0e-11 74.7 48 68.8
ECA240G0139 Erigeron canadensis HOM05D005674 ORTHO05D007015 2.6e-11 74.3 48 68.8
Carub.0008s0124 Capsella rubella HOM05D005674 ORTHO05D007015 3.5e-11 73.9 44 72.7
COL.COLO4_33609 Corchorus olitorius HOM05D005674 ORTHO05D007015 3.5e-11 73.9 48 68.8
A02p30210 Brassica napus HOM05D005674 ORTHO05D007015 4.5e-11 73.6 51 68.6
BraA02t08037Z Brassica rapa HOM05D005674 ORTHO05D007015 4.5e-11 73.6 51 68.6
CARHR174820 Cardamine hirsuta HOM05D005674 ORTHO05D007015 4.5e-11 73.6 46 73.9
Duzib116G0841 Durio zibethinus HOM05D005674 ORTHO05D007015 4.5e-11 73.6 48 68.8
FvH4_6g27690 Fragaria vesca HOM05D005674 ORTHO05D007015 4.5e-11 73.6 48 75.0
Sabra06G0005200 Salix brachista HOM05D005674 ORTHO05D007015 4.5e-11 73.6 48 66.7
TAR626G0412 Trochodendron aralioides HOM05D005674 ORTHO05D007015 4.5e-11 73.6 43 81.4
arahy.Tifrunner.gnm1.ann1.I145LQ Arachis hypogaea HOM05D005674 ORTHO05D007015 5.9e-11 73.2 48 66.7
BcaC06g33618 Brassica carinata HOM05D005674 ORTHO05D007015 5.9e-11 73.2 46 73.9
A03p50860 Brassica napus HOM05D005674 ORTHO05D007015 5.9e-11 73.2 46 73.9
C07p49250 Brassica napus HOM05D005674 ORTHO05D007015 5.9e-11 73.2 46 73.9
BolC7t45434H Brassica oleracea HOM05D005674 ORTHO05D007015 5.9e-11 73.2 46 73.9
BraA03t14173Z Brassica rapa HOM05D005674 ORTHO05D007015 5.9e-11 73.2 46 73.9
Duzib160G0406 Durio zibethinus HOM05D005674 ORTHO05D007015 5.9e-11 73.2 48 66.7
Thhalv10001221m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 5.9e-11 73.2 43 76.7
Lsat_1_v5_gn_3_116841 Lactuca sativa HOM05D005674 ORTHO05D007015 5.9e-11 73.2 48 66.7
RcHm_v2.0_Chr2g0130841 Rosa chinensis HOM05D005674 ORTHO05D007015 5.9e-11 73.2 48 70.8
Gohir.D13G161800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 7.7e-11 72.8 48 68.8
Gorai.013G183800 Gossypium raimondii HOM05D005674 ORTHO05D007015 7.7e-11 72.8 48 68.8
Thecc.01G153300 Theobroma cacao HOM05D005674 ORTHO05D007015 7.7e-11 72.8 46 73.9
GSVIVG01024415001 Vitis vinifera HOM05D005674 ORTHO05D007015 7.7e-11 72.8 48 68.8
AL8G11670 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 1.0e-10 72.4 45 71.1
HanXRQChr13g0421081 Helianthus annuus HOM05D005674 ORTHO05D007015 1.0e-10 72.4 48 66.7
CsaV3_4G030900 Cucumis sativus L. HOM05D005674 ORTHO05D007015 1.3e-10 72.0 48 62.5
Manes.09G079700 Manihot esculenta HOM05D005674 ORTHO05D007015 1.3e-10 72.0 48 68.8
AT5G46680 Arabidopsis thaliana HOM05D005674 ORTHO05D007015 1.7e-10 71.6 45 68.9
Solyc07g055220.3 Solanum lycopersicum HOM05D005674 ORTHO05D007015 2.2e-10 71.2 44 70.5
Sopen07g027000 Solanum pennellii HOM05D005674 ORTHO05D007015 2.2e-10 71.2 44 70.5
PGSC0003DMG401020415 Solanum tuberosum HOM05D005674 ORTHO05D007015 2.2e-10 71.2 44 70.5
C02p47730 Brassica napus HOM05D005674 ORTHO05D007015 3.8e-10 70.5 51 62.7
BolC2t10809H Brassica oleracea HOM05D005674 ORTHO05D007015 3.8e-10 70.5 51 62.7
Lalb_Chr01g0007701 Lupinus albus HOM05D005674 ORTHO05D007015 3.8e-10 70.5 48 64.6
Solyc02g086230.2 Solanum lycopersicum HOM05D005674 ORTHO05D007015 3.8e-10 70.5 44 68.2
Sopen02g030910 Solanum pennellii HOM05D005674 ORTHO05D007015 3.8e-10 70.5 44 68.2
Eucgr.K01145 Eucalyptus grandis HOM05D005674 ORTHO05D007015 5.0e-10 70.1 48 64.6
PGSC0003DMG400026386 Solanum tuberosum HOM05D005674 ORTHO05D007015 5.0e-10 70.1 44 65.9
TWI31G0445 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 5.0e-10 70.1 44 70.5
Manes.08G068200 Manihot esculenta HOM05D005674 ORTHO05D007015 6.5e-10 69.7 48 64.6
Peaxi162Scf00888g00007 Petunia axillaris HOM05D005674 ORTHO05D007015 6.5e-10 69.7 44 68.2
CARHR224650 Cardamine hirsuta HOM05D005674 ORTHO05D007015 8.5e-10 69.3 46 71.7
SGA_v2.0_scaffold18G08491 Striga asiatica HOM05D005674 ORTHO05D007015 8.5e-10 69.3 44 72.7
BcaC03g16871 Brassica carinata HOM05D005674 ORTHO05D007015 1.1e-09 68.9 51 60.8
TPR.G14745 Trifolium pratense HOM05D005674 ORTHO05D007015 1.5e-09 68.6 48 58.3
HPP92_017208 Vanilla planifolia HOM05D005674 ORTHO05D007015 1.5e-09 68.6 43 69.8
arahy.Tifrunner.gnm1.ann1.MAGV51 Arachis hypogaea HOM05D005674 ORTHO05D007015 1.9e-09 68.2 48 62.5
CAN.G625.40 Capsicum annuum HOM05D005674 ORTHO05D007015 1.9e-09 68.2 44 65.9
Lj3g0025693 Lotus japonicus HOM05D005674 ORTHO05D007015 1.9e-09 68.2 50 60.0
Sed0008626 Sechium edule HOM05D005674 ORTHO05D007015 1.9e-09 68.2 43 67.4
Atru.chr7.2335 Acer truncatum HOM05D005674 ORTHO05D007015 2.5e-09 67.8 48 66.7
ClCG07G002660 Citrullus lanatus HOM05D005674 ORTHO05D007015 3.2e-09 67.4 48 58.3
Migut.F00129 Erythranthe guttata HOM05D005674 ORTHO05D007015 3.2e-09 67.4 48 66.7
Cc05_g08520 Coffea canephora HOM05D005674 ORTHO05D007015 4.2e-09 67.0 48 62.5
Glyma.03G075500 Glycine max HOM05D005674 ORTHO05D007015 4.2e-09 67.0 46 67.4
PGR142G3640 Punica granatum HOM05D005674 ORTHO05D007015 4.2e-09 67.0 48 62.5
VMungo1309G1849 Vigna mungo HOM05D005674 ORTHO05D007015 4.2e-09 67.0 46 69.6
DCAR_018956 Daucus carota HOM05D005674 ORTHO05D007015 5.5e-09 66.6 44 65.9
TPR.G15161 Trifolium pratense HOM05D005674 ORTHO05D007015 5.5e-09 66.6 48 56.2
SalBow4G2062 Salvia bowleyana HOM05D005674 ORTHO05D007015 7.2e-09 66.2 44 68.2
Psat0s443g0080 Pisum sativum HOM05D005674 ORTHO05D007015 9.4e-09 65.9 48 60.4
Gohir.A13G157000 Gossypium hirsutum HOM05D005674 ORTHO05D007015 1.6e-08 65.1 46 65.2
arahy.Tifrunner.gnm1.ann1.U482D3 Arachis hypogaea HOM05D005674 ORTHO05D007015 2.1e-08 64.7 40 70.0
Cpa.g.sc90.66 Carica papaya HOM05D005674 ORTHO05D007015 2.1e-08 64.7 40 72.5
Nitab4.5_0000753g0050 Nicotiana tabacum HOM05D005674 ORTHO05D007015 2.7e-08 64.3 39 66.7
PSO063G6562 Papaver somniferum HOM05D005674 ORTHO05D007015 4.7e-08 63.5 48 62.5
PSO782G5737 Papaver somniferum HOM05D005674 ORTHO05D007015 4.7e-08 63.5 48 62.5
MELO3C033809.2 Cucumis melo HOM05D005674 ORTHO05D007015 6.1e-08 63.2 48 58.3
Nitab4.5_0000249g0090 Nicotiana tabacum HOM05D005674 ORTHO05D007015 6.1e-08 63.2 39 66.7
CAN.G1360.17 Capsicum annuum HOM05D001556 ORTHO05D001505 8.0e-08 62.8 39 64.1
CAN.G1360.18 Capsicum annuum HOM05D005674 ORTHO05D007015 8.0e-08 62.8 39 64.1
CsaV3_5G005440 Cucumis sativus L. HOM05D005674 ORTHO05D007015 8.0e-08 62.8 48 58.3
Nitab4.5_0007923g0040 Nicotiana tabacum HOM05D005674 ORTHO05D007015 8.0e-08 62.8 39 66.7
Phvul.009G126100 Phaseolus vulgaris HOM05D005674 ORTHO05D007015 8.0e-08 62.8 46 65.2
MELO3C020050.2 Cucumis melo HOM05D005674 ORTHO05D007015 1.0e-07 62.4 48 58.3
CsaV3_5G013070 Cucumis sativus L. HOM05D005674 ORTHO05D007015 1.0e-07 62.4 48 56.2
CsaV3_UNG017130 Cucumis sativus L. HOM05D005674 ORTHO05D007015 1.0e-07 62.4 48 56.2
FAN23G2012 Fragaria x ananassa HOM05D005674 ORTHO05D007015 1.8e-07 61.6 40 75.0
Medtr7g024140 Medicago truncatula HOM05D005674 ORTHO05D007015 1.8e-07 61.6 48 56.2
Aqoxy3G02039 Aquilegia oxysepala HOM05D005674 ORTHO05D007015 3.0e-07 60.8 46 63.0
Nitab4.5_0007990g0010 Nicotiana tabacum HOM05D005674 ORTHO05D007015 1.1e-06 58.9 39 61.5
Os02g0793200 Oryza sativa ssp. japonica HOM05D005674 ORTHO05D007015 3.3e-06 57.4 44 54.5
Ca_14577_v3 Cicer arietinum L. HOM05D005674 ORTHO05D007015 5.7e-06 56.6 39 59.0
MELO3C033079.2 Cucumis melo HOM05D005674 ORTHO05D031076 7.4e-06 56.2 43 55.8


User provided reference genes

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