Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1132G047 Amborella trichopoda HOM05D005121 ORTHO05D006115 4.9e-171 604.4 304 100.0
Nn1g06832 Nelumbo nucifera HOM05D005121 ORTHO05D006115 8.2e-150 533.9 304 86.5
TAR627G0857 Trochodendron aralioides HOM05D005121 ORTHO05D006115 3.6e-145 518.5 305 83.6
Duzib235G0052 Durio zibethinus HOM05D005121 ORTHO05D006115 4.6e-145 518.1 304 83.6
Gohir.D10G019900 Gossypium hirsutum HOM05D005121 ORTHO05D006115 1.4e-144 516.5 304 79.6
Thecc.06G202500 Theobroma cacao HOM05D005121 ORTHO05D006115 2.0e-143 512.7 305 80.7
Dinv18977 Davidia involucrata HOM05D005121 ORTHO05D006115 3.3e-143 511.9 305 82.0
Duzib160G0488 Durio zibethinus HOM05D005121 ORTHO05D006115 4.3e-143 511.5 305 82.6
Gorai.011G021100 Gossypium raimondii HOM05D005121 ORTHO05D006115 1.3e-142 510.0 304 81.2
Ciclev10016069m.g Citrus clementina HOM05D005121 ORTHO05D006115 3.7e-142 508.4 305 82.6
Gohir.A10G019000 Gossypium hirsutum HOM05D005121 ORTHO05D006115 4.8e-142 508.1 304 80.9
Aqoxy7G03433 Aquilegia oxysepala HOM05D005121 ORTHO05D006115 1.8e-141 506.1 305 80.7
GSVIVG01003678001 Vitis vinifera HOM05D005121 ORTHO05D006115 2.4e-141 505.8 305 78.7
arahy.Tifrunner.gnm1.ann1.XU4W4S Arachis hypogaea HOM05D005121 ORTHO05D006115 4.1e-141 505.0 305 82.0
Oeu027963.1 Olea europaea HOM05D005121 ORTHO05D006115 4.1e-141 505.0 305 82.0
Potri.004G026800 Populus trichocarpa HOM05D005121 ORTHO05D006115 5.3e-141 504.6 305 79.3
arahy.Tifrunner.gnm1.ann1.ANU5MI Arachis hypogaea HOM05D005121 ORTHO05D006115 9.1e-141 503.8 305 82.0
arahy.Tifrunner.gnm1.ann1.FY8LHX Arachis hypogaea HOM05D005121 ORTHO05D006115 1.2e-140 503.4 305 81.6
CANSAT56G0975 Cannabis sativa HOM05D005121 ORTHO05D006115 2.6e-140 502.3 304 79.3
Potri.011G040000 Populus trichocarpa HOM05D005121 ORTHO05D006115 1.0e-139 500.4 305 78.7
QL05p080508 Quercus lobata HOM05D005121 ORTHO05D006115 1.0e-139 500.4 304 80.6
Actinidia24048 Actinidia chinensis HOM05D005121 ORTHO05D006115 2.9e-139 498.8 305 77.4
CSS0043949 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 2.9e-139 498.8 305 80.3
VMungo0540G0293 Vigna mungo HOM05D005121 ORTHO05D006115 3.8e-139 498.4 305 80.7
COL.COLO4_31636 Corchorus olitorius HOM05D005121 ORTHO05D006115 5.0e-139 498.0 305 81.6
PGR031G1397 Punica granatum HOM05D005121 ORTHO05D006115 5.0e-139 498.0 305 81.0
CSS0003935 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 6.5e-139 497.7 305 80.0
Eucgr.D00772 Eucalyptus grandis HOM05D005121 ORTHO05D006115 1.1e-138 496.9 305 79.7
PSO210G2069 Papaver somniferum HOM05D005121 ORTHO05D006115 1.1e-138 496.9 305 79.7
Rhsim02G0118100 Rhododendron simsii HOM05D005121 ORTHO05D006115 1.1e-138 496.9 305 79.7
Manes.17G032800 Manihot esculenta HOM05D005121 ORTHO05D006115 1.4e-138 496.5 301 80.1
CiPaw.10G115700 Carya illinoinensis HOM05D005121 ORTHO05D006115 1.9e-138 496.1 305 77.7
Glyma.15G066000 Glycine max HOM05D005121 ORTHO05D006115 3.2e-138 495.4 305 81.0
Phvul.006G193700 Phaseolus vulgaris HOM05D005121 ORTHO05D006115 4.2e-138 495.0 305 80.3
CAN.G424.38 Capsicum annuum HOM05D005121 ORTHO05D006115 7.2e-138 494.2 305 77.0
MD05G1329000 Malus domestica HOM05D005121 ORTHO05D006115 7.2e-138 494.2 304 77.0
CDE02G1411 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 9.4e-138 493.8 305 80.0
Sabra11G0027500 Salix brachista HOM05D005121 ORTHO05D006115 1.6e-137 493.0 305 78.4
Sed0024430 Sechium edule HOM05D005121 ORTHO05D006115 1.6e-137 493.0 305 77.4
Ca_00225_v3 Cicer arietinum L. HOM05D005121 ORTHO05D006115 2.7e-137 492.3 305 80.0
Cc06_g18220 Coffea canephora HOM05D005121 ORTHO05D006115 2.7e-137 492.3 305 76.7
Lj1A1216T23 Lonicera japonica HOM05D005121 ORTHO05D006115 3.6e-137 491.9 307 76.2
TWI63G0506 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 3.6e-137 491.9 304 76.0
Nitab4.5_0000649g0190 Nicotiana tabacum HOM05D005121 ORTHO05D006115 4.7e-137 491.5 305 76.1
Glyma.13G247800 Glycine max HOM05D005121 ORTHO05D006115 6.1e-137 491.1 305 80.0
Nitab4.5_0005620g0020 Nicotiana tabacum HOM05D005121 ORTHO05D006115 6.1e-137 491.1 305 78.0
MELO3C022396.2 Cucumis melo HOM05D005121 ORTHO05D006115 7.9e-137 490.7 305 77.4
CsaV3_6G007300 Cucumis sativus L. HOM05D005121 ORTHO05D006115 1.0e-136 490.3 305 77.4
CDE05G3522 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 1.8e-136 489.6 304 79.3
Prupe.4G033800 Prunus persica HOM05D005121 ORTHO05D006115 1.8e-136 489.6 305 79.0
Oeu030047.2 Olea europaea HOM05D005121 ORTHO05D006115 2.3e-136 489.2 326 76.7
ClCG09G021600 Citrullus lanatus HOM05D005121 ORTHO05D006115 3.0e-136 488.8 305 77.0
Lj6g0004146 Lotus japonicus HOM05D005121 ORTHO05D006115 3.0e-136 488.8 305 76.4
Hund21294 Selenicereus undatus HOM05D005121 ORTHO05D006115 5.1e-136 488.0 302 80.5
Peaxi162Scf01152g00110 Petunia axillaris HOM05D005121 ORTHO05D006115 1.5e-135 486.5 305 76.4
MSTRG.7276 Avicennia marina HOM05D005121 ORTHO05D006115 2.0e-135 486.1 305 78.4
Medtr2g011480 Medicago truncatula HOM05D005121 ORTHO05D006115 2.6e-135 485.7 305 79.7
TWI38G0490 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 2.6e-135 485.7 305 78.7
unitig_26.g9381 Utricularia gibba HOM05D005121 ORTHO05D006115 2.6e-135 485.7 305 76.4
ClCG06G001360 Citrullus lanatus HOM05D005121 ORTHO05D006115 3.3e-135 485.3 305 76.4
MD10G1305900 Malus domestica HOM05D005121 ORTHO05D006115 3.3e-135 485.3 305 76.1
PGSC0003DMG400022347 Solanum tuberosum HOM05D005121 ORTHO05D006115 3.3e-135 485.3 305 77.7
TPR.G19604 Trifolium pratense HOM05D005121 ORTHO05D006115 5.7e-135 484.6 305 76.7
Sopen02g024200 Solanum pennellii HOM05D005121 ORTHO05D006115 7.4e-135 484.2 305 77.4
DCAR_004161 Daucus carota HOM05D005121 ORTHO05D006115 9.7e-135 483.8 305 76.1
Solyc02g079400.3 Solanum lycopersicum HOM05D005121 ORTHO05D006115 1.3e-134 483.4 305 77.4
Cfa000313 Carpinus fangiana HOM05D005121 ORTHO05D006115 1.7e-134 483.0 303 77.6
Os03g0279900 Oryza sativa ssp. japonica HOM05D005121 ORTHO05D006115 2.2e-134 482.6 301 77.4
Lalb_Chr18g0060031 Lupinus albus HOM05D005121 ORTHO05D006115 2.8e-134 482.3 305 77.7
Psat1g209560 Pisum sativum HOM05D005121 ORTHO05D006115 2.8e-134 482.3 305 79.0
EL10Ac6g14131 Beta vulgaris HOM05D005121 ORTHO05D006115 3.7e-134 481.9 301 76.4
MELO3C013201.2 Cucumis melo HOM05D005121 ORTHO05D006115 4.8e-134 481.5 305 76.1
AUR62012514 Chenopodium quinoa HOM05D005121 ORTHO05D006115 8.2e-134 480.7 301 76.7
AUR62014685 Chenopodium quinoa HOM05D005121 ORTHO05D006115 1.1e-133 480.3 301 76.4
CsaV3_7G021490 Cucumis sativus L. HOM05D005121 ORTHO05D006115 1.4e-133 479.9 305 75.7
DCAR_008096 Daucus carota HOM05D005121 ORTHO05D006115 1.4e-133 479.9 305 76.4
Lsat_1_v5_gn_5_78441 Lactuca sativa HOM05D005121 ORTHO05D006115 1.4e-133 479.9 305 75.4
HanXRQChr12g0359441 Helianthus annuus HOM05D005121 ORTHO05D006115 1.8e-133 479.6 305 74.8
Manes.16G019177 Manihot esculenta HOM05D005121 ORTHO05D006115 4.1e-133 478.4 302 78.5
RcHm_v2.0_Chr5g0005701 Rosa chinensis HOM05D005121 ORTHO05D006115 9.1e-133 477.2 305 75.4
ECA234G4718 Erigeron canadensis HOM05D005121 ORTHO05D006115 1.5e-132 476.5 305 73.4
THA.LOC104809541 Tarenaya hassleriana HOM05D005121 ORTHO05D006115 3.5e-132 475.3 305 77.0
SGA_v2.0_scaffold114G31993 Striga asiatica HOM05D005121 ORTHO05D006115 7.7e-132 474.2 308 73.7
Migut.M01229 Erythranthe guttata HOM05D005121 ORTHO05D006115 1.0e-131 473.8 305 77.4
Sc24g0000680 Simmondsia chinensis HOM05D005121 ORTHO05D006115 1.0e-131 473.8 303 76.9
FvH4_3g03660 Fragaria vesca HOM05D005121 ORTHO05D006115 3.8e-131 471.9 305 74.4
FAN25G2418 Fragaria x ananassa HOM05D005121 ORTHO05D006115 3.8e-131 471.9 305 74.4
Zm00001eb012710 Zea mays HOM05D005121 ORTHO05D006115 5.0e-131 471.5 301 78.4
FAN21G3866 Fragaria x ananassa HOM05D005121 ORTHO05D006115 6.5e-131 471.1 305 74.1
Sabra04G0015300 Salix brachista HOM05D005121 ORTHO05D006115 1.1e-130 470.3 372 64.8
Zm00001eb397440 Zea mays HOM05D005121 ORTHO05D006115 7.2e-130 467.6 305 77.4
FAN16G2329 Fragaria x ananassa HOM05D005121 ORTHO05D006115 4.7e-129 464.9 302 74.2
CARHR011610 Cardamine hirsuta HOM05D005121 ORTHO05D006115 2.3e-128 462.6 307 74.6
Zm00001eb397450 Zea mays HOM05D005121 ORTHO05D006115 3.0e-128 462.2 304 76.0
Zm00001eb397460 Zea mays HOM05D005121 ORTHO05D006115 3.0e-128 462.2 304 76.0
Aa31LG2G9240 Aethionema arabicum HOM05D005121 ORTHO05D006115 6.7e-128 461.1 308 71.1
CARHR050750 Cardamine hirsuta HOM05D005121 ORTHO05D006115 1.5e-127 459.9 310 70.0
FAN11G1262 Fragaria x ananassa HOM05D005121 ORTHO05D006115 5.7e-127 458.0 330 68.8
Zm00001eb397470 Zea mays HOM05D005121 ORTHO05D006115 5.7e-127 458.0 304 75.3
Zm00001eb397480 Zea mays HOM05D005121 ORTHO05D006115 1.1e-125 453.8 304 74.7
Thhalv10023604m.g Eutrema salsugineum HOM05D005121 ORTHO05D006115 1.8e-125 453.0 310 68.4
Sp2g02960 Schrenkiella parvula HOM05D005121 ORTHO05D006115 1.8e-125 453.0 308 69.5
AL2G14620 Arabidopsis lyrata HOM05D005121 ORTHO05D006115 2.4e-125 452.6 310 68.4
Carub.0002s0357 Capsella rubella HOM05D005121 ORTHO05D006115 2.4e-125 452.6 310 69.7
A01p30380 Brassica napus HOM05D005121 ORTHO05D006115 5.3e-125 451.4 310 68.4
C01p38590 Brassica napus HOM05D005121 ORTHO05D006115 5.3e-125 451.4 310 68.4
BraA01t03171Z Brassica rapa HOM05D005121 ORTHO05D006115 5.3e-125 451.4 310 68.4
AT1G61620 Arabidopsis thaliana HOM05D005121 ORTHO05D006115 7.0e-125 451.1 310 69.4
BcaC06g31855 Brassica carinata HOM05D005121 ORTHO05D006115 1.2e-124 450.3 310 68.7
Haze_06613 Corylus avellana HOM05D005121 ORTHO05D006115 2.2e-123 446.0 391 60.6
Pp3c9_6940 Physcomitrium patens HOM05D005121 ORTHO05D006115 4.4e-119 431.8 301 69.1
Mapoly0029s0083 Marchantia polymorpha HOM05D005121 ORTHO05D006115 4.8e-118 428.3 303 68.6
Pp3c15_12040 Physcomitrium patens HOM05D005121 ORTHO05D006115 7.7e-116 421.0 301 67.8
Migut.H01530 Erythranthe guttata HOM05D005121 ORTHO05D006115 3.2e-114 415.6 300 67.7
SMO147G0402 Selaginella moellendorffii HOM05D005121 ORTHO05D006115 1.0e-112 410.6 301 65.1
unitig_749.g13632 Utricularia gibba HOM05D005121 ORTHO05D006115 1.2e-105 387.1 305 66.9
AagrBONN_evm.TU.Sc2ySwM_344.3296 Anthoceros agrestis HOM05D005121 ORTHO05D006115 3.6e-105 385.6 300 63.3
Atru.chr10.2037 Acer truncatum HOM05D005121 ORTHO05D006115 1.4e-104 383.6 235 80.9
Actinidia11821 Actinidia chinensis HOM05D005121 ORTHO05D006115 6.3e-102 374.8 261 73.6
CBR_g4035 Chara braunii HOM05D005121 ORTHO05D006115 1.2e-97 360.5 308 59.7
vmacro15854 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 6.6e-91 338.2 225 76.0
HPP92_010075 Vanilla planifolia HOM05D005121 ORTHO05D006115 4.0e-88 328.9 207 76.3
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 9.8e-87 324.3 225 69.3
Ah.09g236300 Amaranthus hybridus HOM05D005121 ORTHO05D006115 9.2e-85 317.8 224 73.2
HanXRQChr10g0310231 Helianthus annuus HOM05D005121 ORTHO05D006115 3.9e-67 259.2 160 77.5
Cpa.g.sc27.158 Carica papaya HOM05D005121 ORTHO05D006115 4.8e-65 252.3 143 83.2
BcaB04g20348 Brassica carinata HOM05D005121 ORTHO05D006115 3.2e-61 239.6 149 74.5
Peaxi162Scf01035g00217 Petunia axillaris HOM05D005121 ORTHO05D006115 4.3e-58 229.2 181 64.1
Zm00001eb396290 Zea mays HOM05D005121 ORTHO05D006115 9.9e-55 218.0 153 69.3
BcaB04g20349 Brassica carinata HOM05D005121 ORTHO05D006115 2.1e-52 210.3 158 62.0
Sed0008986 Sechium edule HOM05D005121 ORTHO05D006115 8.1e-49 198.4 298 43.0
ATR1132G008 Amborella trichopoda HOM05D005121 ORTHO05D006115 9.6e-42 174.9 89 91.0
MCO09G390 Micromonas commoda HOM05D005121 ORTHO05D006115 2.6e-39 166.8 298 36.9
Peaxi162Scf00047g00079 Petunia axillaris HOM05D005121 ORTHO05D006115 7.6e-39 165.2 83 88.0
vmacro15853 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 6.5e-38 162.2 80 90.0
Ah.09g236480 Amaranthus hybridus HOM05D005121 ORTHO05D006115 2.5e-37 160.2 79 89.9
BolC1t03821H Brassica oleracea HOM05D005121 ORTHO05D006115 3.2e-37 159.8 80 87.5
SHI00053 Sapria himalayana HOM05D005121 ORTHO05D006115 2.3e-35 153.7 132 56.1
Cre02.g142086 Chlamydomonas reinhardtii HOM05D005121 ORTHO05D006115 1.1e-34 151.4 304 35.2
Ah.14g088780 Amaranthus hybridus HOM05D005121 ORTHO05D006115 6.3e-33 145.6 200 44.5
CARHR260990 Cardamine hirsuta HOM05D005121 ORTHO05D006115 3.4e-31 139.8 125 52.8
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 2.5e-29 133.7 79 79.7
Hma1.2p1_0155F.1_g068340 Hydrangea macrophylla HOM05D005121 ORTHO05D006115 2.3e-27 127.1 84 69.0
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 2.6e-23 113.6 58 86.2
SGA_v2.0_scaffold7G03907 Striga asiatica HOM05D005121 ORTHO05D006115 9.4e-21 105.1 85 60.0
PRCOL_00001084 Prasinoderma coloniale HOM05D005121 ORTHO05D006115 5.7e-18 95.9 294 32.7
Atru.chr10.2036 Acer truncatum HOM05D005121 ORTHO05D006115 8.2e-17 92.0 60 73.3
TAR626G1242 Trochodendron aralioides HOM05D005121 ORTHO05D006115 5.3e-16 89.4 74 74.3
Cfa022197 Carpinus fangiana HOM05D005121 ORTHO05D006115 3.5e-15 86.7 239 29.7


User provided reference genes

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