Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1132G031 Amborella trichopoda HOM05D004776 ORTHO05D005777 0.0e+00 1108.6 582 100.0
Nn2g11574 Nelumbo nucifera HOM05D004776 ORTHO05D005777 9.1e-190 667.5 576 62.7
TAR623G0387 Trochodendron aralioides HOM05D004776 ORTHO05D005777 2.9e-188 662.5 576 62.2
Aqoxy2G01783 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 8.8e-185 651.0 579 61.3
PSO339G3038 Papaver somniferum HOM05D004776 ORTHO05D005777 5.0e-180 635.2 577 60.1
QL01p015865 Quercus lobata HOM05D004776 ORTHO05D005777 5.5e-179 631.7 584 60.4
Hma1.2p1_0569F.1_g180290 Hydrangea macrophylla HOM05D004776 ORTHO05D005777 1.0e-177 627.5 584 58.6
PSO801G0074 Papaver somniferum HOM05D004776 ORTHO05D005777 3.0e-177 625.9 577 59.6
Prupe.6G108100 Prunus persica HOM05D004776 ORTHO05D005777 1.3e-175 620.5 582 58.4
GSVIVG01031509001 Vitis vinifera HOM05D004776 ORTHO05D005777 1.7e-175 620.2 576 58.9
CiPaw.13G118600 Carya illinoinensis HOM05D004776 ORTHO05D005777 2.8e-175 619.4 576 59.7
MD11G1145200 Malus domestica HOM05D004776 ORTHO05D005777 2.8e-175 619.4 582 59.6
RcHm_v2.0_Chr2g0122071 Rosa chinensis HOM05D004776 ORTHO05D005777 4.8e-175 618.6 582 58.2
PSO339G3219 Papaver somniferum HOM05D004776 ORTHO05D005777 1.4e-174 617.1 590 58.3
CSS0005795 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 2.4e-174 616.3 583 58.7
CSS0042525 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 1.2e-173 614.0 583 58.5
vmacro14409 Vaccinium macrocarpon HOM05D004776 ORTHO05D005777 5.9e-173 611.7 583 58.8
CANSAT54G2950 Cannabis sativa HOM05D004776 ORTHO05D005777 2.2e-172 609.8 586 58.7
FvH4_1g24650 Fragaria vesca HOM05D004776 ORTHO05D005777 2.9e-172 609.4 581 57.8
FAN28G2552 Fragaria x ananassa HOM05D004776 ORTHO05D005777 5.0e-172 608.6 588 57.3
FAN26G3463 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.9e-171 606.7 588 57.1
FAN23G0844 Fragaria x ananassa HOM05D004776 ORTHO05D005777 9.4e-171 604.4 585 57.3
Lalb_Chr03g0027621 Lupinus albus HOM05D004776 ORTHO05D005777 4.7e-170 602.1 583 57.1
Manes.04G015500 Manihot esculenta HOM05D004776 ORTHO05D005777 6.1e-170 601.7 580 58.1
FAN19G0403 Fragaria x ananassa HOM05D004776 ORTHO05D005777 8.0e-170 601.3 588 57.0
Actinidia20436 Actinidia chinensis HOM05D004776 ORTHO05D005777 3.0e-169 599.4 581 57.7
SalBow3G4083 Salvia bowleyana HOM05D004776 ORTHO05D005777 6.8e-169 598.2 581 56.5
Phvul.005G131900 Phaseolus vulgaris HOM05D004776 ORTHO05D005777 8.8e-169 597.8 578 57.8
Ciclev10028099m.g Citrus clementina HOM05D004776 ORTHO05D005777 1.5e-168 597.0 583 58.0
Glyma.13G323400 Glycine max HOM05D004776 ORTHO05D005777 3.4e-168 595.9 578 57.4
ECA248G3913 Erigeron canadensis HOM05D004776 ORTHO05D005777 5.7e-168 595.1 582 56.2
Thecc.09G348100 Theobroma cacao HOM05D004776 ORTHO05D005777 5.7e-168 595.1 581 58.0
HanXRQChr11g0346181 Helianthus annuus HOM05D004776 ORTHO05D005777 9.8e-168 594.3 581 57.1
Haze_23751 Corylus avellana HOM05D004776 ORTHO05D005777 2.8e-167 592.8 579 58.0
Lj3g0025221 Lotus japonicus HOM05D004776 ORTHO05D005777 6.3e-167 591.7 576 58.0
VMungo1080G0818 Vigna mungo HOM05D004776 ORTHO05D006187 6.3e-167 591.7 578 58.3
Gorai.003G144600 Gossypium raimondii HOM05D004776 ORTHO05D005777 3.1e-166 589.3 579 57.7
PGR102G1642 Punica granatum HOM05D004776 ORTHO05D005777 3.1e-166 589.3 584 57.0
Medtr2g095420 Medicago truncatula HOM05D004776 ORTHO05D005777 5.4e-166 588.6 576 56.9
SGA_v2.0_scaffold116G32209 Striga asiatica HOM05D004776 ORTHO05D005777 5.4e-166 588.6 580 56.0
Gorai.013G268700 Gossypium raimondii HOM05D004776 ORTHO05D005777 1.2e-165 587.4 578 58.3
TPR.G11629 Trifolium pratense HOM05D004776 ORTHO05D005777 3.5e-165 585.9 580 56.2
Psat0s3241g0040 Pisum sativum HOM05D004776 ORTHO05D005777 7.7e-165 584.7 576 57.3
CAN.G1755.5 Capsicum annuum HOM05D004776 ORTHO05D005777 1.3e-164 583.9 581 56.1
Cc01_g10560 Coffea canephora HOM05D004776 ORTHO05D005777 1.3e-164 583.9 579 57.2
Potri.009G007900 Populus trichocarpa HOM05D004776 ORTHO05D005777 1.3e-164 583.9 585 57.3
THA.LOC104799516 Tarenaya hassleriana HOM05D004776 ORTHO05D005777 1.3e-164 583.9 585 56.1
PGSC0003DMG400007163 Solanum tuberosum HOM05D004776 ORTHO05D005777 2.2e-164 583.2 580 56.6
Gohir.D03G137500 Gossypium hirsutum HOM05D004776 ORTHO05D005777 2.9e-164 582.8 579 57.3
Rhsim01G0212300 Rhododendron simsii HOM05D004776 ORTHO05D005777 5.0e-164 582.0 620 55.3
Sed0027733 Sechium edule HOM05D004776 ORTHO05D005777 5.0e-164 582.0 583 56.9
Solyc06g074960.4 Solanum lycopersicum HOM05D004776 ORTHO05D005777 1.5e-163 580.5 583 56.3
AT3G45040 Arabidopsis thaliana HOM05D004776 ORTHO05D005777 2.1e-162 576.6 578 54.7
AL5G23530 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 2.8e-162 576.2 578 55.0
TWI79G1687 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 8.0e-162 574.7 584 56.2
C04p17380 Brassica napus HOM05D004776 ORTHO05D005777 4.0e-161 572.4 576 54.7
BolC4t23289H Brassica oleracea HOM05D004776 ORTHO05D005777 4.0e-161 572.4 576 54.7
CsaV3_1G013400 Cucumis sativus L. HOM05D004776 ORTHO05D005777 4.0e-161 572.4 583 55.9
MSTRG.17776 Avicennia marina HOM05D004776 ORTHO05D005777 5.2e-161 572.0 583 56.6
Oeu018486.2 Olea europaea HOM05D004776 ORTHO05D005777 1.2e-160 570.9 580 55.5
TWI31G0757 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 1.2e-160 570.9 586 55.3
BcaC02g11340 Brassica carinata HOM05D004776 ORTHO05D005777 1.5e-160 570.5 576 54.3
Sp5g16230 Schrenkiella parvula HOM05D004776 ORTHO05D005777 2.0e-160 570.1 579 54.9
arahy.Tifrunner.gnm1.ann1.69IQEU Arachis hypogaea HOM05D004776 ORTHO05D005777 3.4e-160 569.3 582 55.0
CARHR150930 Cardamine hirsuta HOM05D004776 ORTHO05D005777 3.4e-160 569.3 579 53.7
arahy.Tifrunner.gnm1.ann1.K18VCE Arachis hypogaea HOM05D004776 ORTHO05D005777 9.8e-160 567.8 584 55.0
arahy.Tifrunner.gnm1.ann1.UZ8W9W Arachis hypogaea HOM05D004776 ORTHO05D005777 1.3e-159 567.4 584 55.1
BolC1t03347H Brassica oleracea HOM05D004776 ORTHO05D005777 3.7e-159 565.8 581 53.5
A05p13030 Brassica napus HOM05D004776 ORTHO05D005777 6.3e-159 565.1 582 53.8
BcaC09g49697 Brassica carinata HOM05D004776 ORTHO05D005777 1.1e-158 564.3 581 53.5
BraA05t20243Z Brassica rapa HOM05D004776 ORTHO05D005777 1.4e-158 563.9 582 53.6
ClCG03G002670 Citrullus lanatus HOM05D004776 ORTHO05D005777 2.4e-158 563.1 584 55.8
Carub.0005s1082 Capsella rubella HOM05D004776 ORTHO05D005777 3.5e-157 559.3 579 52.8
Cfa010344 Carpinus fangiana HOM05D004776 ORTHO05D005777 4.5e-157 558.9 532 59.4
C01p33820 Brassica napus HOM05D004776 ORTHO05D005777 1.0e-156 557.8 608 52.3
Sabra09G0004700 Salix brachista HOM05D004776 ORTHO05D005777 1.7e-156 557.0 601 54.2
COL.COLO4_34701 Corchorus olitorius HOM05D004776 ORTHO05D005777 2.5e-155 553.1 513 59.3
Duzib168G1494 Durio zibethinus HOM05D004776 ORTHO05D005777 5.6e-155 552.0 576 56.8
BcaB05g23422 Brassica carinata HOM05D004776 ORTHO05D005777 1.2e-154 550.8 593 51.8
AUR62014926 Chenopodium quinoa HOM05D004776 ORTHO05D005777 6.1e-154 548.5 582 54.3
PSO063G2354 Papaver somniferum HOM05D004776 ORTHO05D005777 1.4e-153 547.4 509 58.3
HPP92_025805 Vanilla planifolia HOM05D004776 ORTHO05D005777 1.4e-153 547.4 543 54.9
AUR62029209 Chenopodium quinoa HOM05D004776 ORTHO05D005777 3.0e-153 546.2 582 54.0
Dinv29356 Davidia involucrata HOM05D004776 ORTHO05D006187 3.0e-153 546.2 515 58.3
A01p26580 Brassica napus HOM05D004776 ORTHO05D005777 1.5e-152 543.9 581 52.2
Gohir.D13G237900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 9.8e-152 541.2 578 55.5
BraA01t02588Z Brassica rapa HOM05D004776 ORTHO05D005777 3.7e-151 539.3 582 52.1
SEGI_33157 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 2.4e-150 536.6 577 53.2
Duzib170G0082 Durio zibethinus HOM05D004776 ORTHO05D005777 4.1e-150 535.8 601 54.4
Peaxi162Scf01159g00227 Petunia axillaris HOM05D004776 ORTHO05D005777 3.9e-148 529.3 616 51.8
arahy.Tifrunner.gnm1.ann1.MGN1WG Arachis hypogaea HOM05D004776 ORTHO05D005777 7.3e-147 525.0 603 51.6
SEGI_23621 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 2.8e-146 523.1 519 55.7
Nitab4.5_0000106g0400 Nicotiana tabacum HOM05D004776 ORTHO05D005777 5.2e-145 518.8 582 52.4
Sc05g0005060 Simmondsia chinensis HOM05D004776 ORTHO05D005777 2.6e-144 516.5 518 56.9
Ca_01388_v3 Cicer arietinum L. HOM05D004776 ORTHO05D006187 9.8e-144 514.6 483 58.0
Eucgr.B02538 Eucalyptus grandis HOM05D004776 ORTHO05D005777 1.1e-142 511.1 475 58.1
Lj1A206T59 Lonicera japonica HOM05D004776 ORTHO05D005777 2.4e-142 510.0 488 57.8
DCAR_006106 Daucus carota HOM05D004776 ORTHO05D005777 3.5e-141 506.1 582 52.6
MELO3C035466.2 Cucumis melo HOM05D004776 ORTHO05D005777 1.3e-140 504.2 665 48.3
Thhalv10002461m.g Eutrema salsugineum HOM05D004776 ORTHO05D005777 4.4e-136 489.2 519 52.6
Lsat_1_v5_gn_1_63021 Lactuca sativa HOM05D004776 ORTHO05D005777 1.0e-132 478.0 583 49.7
EL10Ac9g22573 Beta vulgaris HOM05D004776 ORTHO05D005777 1.9e-131 473.8 411 63.3
MBI18_g10191_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 1.2e-130 471.1 327 73.4
Glyma.12G177300 Glycine max HOM05D004776 ORTHO05D005777 8.4e-127 458.4 501 53.5
Zm00001eb232190 Zea mays HOM05D004776 ORTHO05D005777 1.6e-122 444.1 498 53.2
Sopen06g031360 Solanum pennellii HOM05D004776 ORTHO05D005777 4.7e-122 442.6 328 69.2
Manes.11G150502 Manihot esculenta HOM05D004776 ORTHO05D005777 6.2e-122 442.2 568 48.6
Gohir.A03G030900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.1e-121 441.4 329 69.6
Migut.N02573 Erythranthe guttata HOM05D004776 ORTHO05D005777 3.4e-120 436.4 493 52.7
Nitab4.5_0006015g0020 Nicotiana tabacum HOM05D004776 ORTHO05D005777 3.8e-119 433.0 598 46.3
Oeu029897.2 Olea europaea HOM05D004776 ORTHO05D005777 8.4e-111 405.2 382 58.4
unitig_8.g3670 Utricularia gibba HOM05D004776 ORTHO05D005777 1.0e-108 398.3 541 46.0
PGR094G0002 Punica granatum HOM05D004776 ORTHO05D005777 8.1e-106 388.7 242 80.6
PGR094G0004 Punica granatum HOM05D004776 ORTHO05D005777 8.1e-106 388.7 242 80.6
Actinidia14011 Actinidia chinensis HOM05D004776 ORTHO05D005777 2.9e-103 380.2 243 80.2
AL5G23500 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 1.3e-98 364.8 356 56.2
Aqoxy3G00574 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 3.7e-98 363.2 233 76.4
MBI18_g43296_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 1.4e-94 351.3 280 65.0
Actinidia03704 Actinidia chinensis HOM05D004776 ORTHO05D005777 1.4e-86 324.7 192 83.9
BcaNung05690 Brassica carinata HOM05D004776 ORTHO05D005777 2.2e-82 310.8 429 46.9
Mapoly0124s0030 Marchantia polymorpha HOM05D004776 ORTHO05D005777 2.8e-82 310.5 582 37.1
BcaNung05691 Brassica carinata HOM05D004776 ORTHO05D005777 1.6e-77 294.7 407 43.0
Pp3c13_8200 Physcomitrium patens HOM05D004776 ORTHO05D005777 3.6e-77 293.5 597 36.7
Cpa.g.sc1.24 Carica papaya HOM05D004776 ORTHO05D005777 5.1e-76 289.7 426 43.9
Hund01475 Selenicereus undatus HOM05D004776 ORTHO05D005777 4.4e-75 286.6 430 44.9
Atru.chr3.3552 Acer truncatum HOM05D004776 ORTHO05D005777 1.5e-72 278.1 159 84.3
MD00G1033900 Malus domestica HOM05D004776 ORTHO05D005777 1.7e-71 274.6 437 41.0
MBI18_g20776_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 2.5e-70 270.8 381 47.5
Atru.chr3.3553 Acer truncatum HOM05D004776 ORTHO05D005777 4.1e-65 253.4 319 46.4
Aa31LG4G14110 Aethionema arabicum HOM05D004776 ORTHO05D005777 3.0e-60 237.3 143 83.2
CDE06G1539 Ceratophyllum demersum HOM05D004776 ORTHO05D005777 7.5e-59 232.6 198 65.7
Gohir.1Z049525 Gossypium hirsutum HOM05D004776 ORTHO05D005777 2.4e-57 227.6 143 82.5
Gohir.A13G232250 Gossypium hirsutum HOM05D004776 ORTHO05D005777 4.5e-56 223.4 143 80.4
CBR_g19018 Chara braunii HOM05D000019 ORTHO05D000002 8.5e-55 219.2 561 32.1
Cpa.g.sc1.25 Carica papaya HOM05D004776 ORTHO05D005777 4.7e-53 213.4 134 82.1
Actinidia03705 Actinidia chinensis HOM05D004776 ORTHO05D005777 3.0e-52 210.7 348 39.7
FAN27G1933 Fragaria x ananassa HOM05D004776 ORTHO05D005777 4.4e-51 206.8 128 82.0
MD03G1126100 Malus domestica HOM05D004776 ORTHO05D005777 7.7e-48 196.1 474 32.5
AagrBONN_evm.TU.Sc2ySwM_228.5408 Anthoceros agrestis HOM05D004776 ORTHO05D005777 7.0e-41 172.9 506 29.4
FAN05G3839 Fragaria x ananassa HOM05D004776 ORTHO05D005777 5.4e-33 146.7 88 81.8
Ca_01994_v3 Cicer arietinum L. HOM05D004776 ORTHO05D005777 1.6e-32 145.2 236 41.1
FAN07G0780 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.0e-31 142.5 92 77.2
Os02g0142250 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 6.2e-29 133.3 170 47.1
Os02g0146500 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 1.3e-26 125.6 207 41.5
MCO11G119 Micromonas commoda HOM05D004776 ORTHO05D005777 6.4e-26 123.2 273 34.4
Cfa026928 Carpinus fangiana HOM05D004776 ORTHO05D005777 1.5e-19 102.1 258 29.5
MD00G1033800 Malus domestica HOM05D004776 ORTHO05D005777 4.4e-19 100.5 132 44.7
Gohir.A03G030950 Gossypium hirsutum HOM05D004776 ORTHO05D005777 3.7e-18 97.4 177 40.7
Cre06.g277700 Chlamydomonas reinhardtii HOM05D004776 ORTHO05D005777 4.9e-18 97.1 257 30.4
FAN10G3619 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.7e-15 88.6 52 82.7
MD00G1165500 Malus domestica HOM05D004776 ORTHO05D005777 8.6e-15 86.3 89 60.7
Atru.chr3.3551 Acer truncatum HOM05D004776 ORTHO05D005777 2.8e-13 81.3 45 86.7
FAN23G0725 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.8e-13 81.3 127 39.4
PRCOL_00000088 Prasinoderma coloniale HOM05D004776 ORTHO05D005777 1.7e-07 62.0 199 27.6


User provided reference genes

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