Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1132G008 Amborella trichopoda HOM05D005121 ORTHO05D006115 7.7e-51 203.4 92 100.0
ATR1132G047 Amborella trichopoda HOM05D005121 ORTHO05D006115 4.5e-43 177.6 89 91.0
Cpa.g.sc27.158 Carica papaya HOM05D005121 ORTHO05D006115 2.5e-41 171.8 89 86.5
Ciclev10016069m.g Citrus clementina HOM05D005121 ORTHO05D006115 2.5e-41 171.8 89 85.4
Eucgr.D00772 Eucalyptus grandis HOM05D005121 ORTHO05D006115 3.2e-41 171.4 89 85.4
Nitab4.5_0000649g0190 Nicotiana tabacum HOM05D005121 ORTHO05D006115 5.5e-41 170.6 89 85.4
Nitab4.5_0005620g0020 Nicotiana tabacum HOM05D005121 ORTHO05D006115 5.5e-41 170.6 89 85.4
PSO210G2069 Papaver somniferum HOM05D005121 ORTHO05D006115 5.5e-41 170.6 89 85.4
TAR627G0857 Trochodendron aralioides HOM05D005121 ORTHO05D006115 5.5e-41 170.6 89 85.4
GSVIVG01003678001 Vitis vinifera HOM05D005121 ORTHO05D006115 5.5e-41 170.6 85 90.6
Nn1g06832 Nelumbo nucifera HOM05D005121 ORTHO05D006115 7.2e-41 170.2 85 90.6
Gohir.D10G019900 Gossypium hirsutum HOM05D005121 ORTHO05D006115 9.4e-41 169.9 91 84.6
Peaxi162Scf01152g00110 Petunia axillaris HOM05D005121 ORTHO05D006115 9.4e-41 169.9 89 84.3
CAN.G424.38 Capsicum annuum HOM05D005121 ORTHO05D006115 1.2e-40 169.5 89 85.4
CDE02G1411 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 1.2e-40 169.5 89 85.4
Dinv18977 Davidia involucrata HOM05D005121 ORTHO05D006115 1.2e-40 169.5 85 89.4
Cc06_g18220 Coffea canephora HOM05D005121 ORTHO05D006115 1.6e-40 169.1 89 84.3
MD05G1329000 Malus domestica HOM05D005121 ORTHO05D006115 1.6e-40 169.1 89 84.3
MD10G1305900 Malus domestica HOM05D005121 ORTHO05D006115 1.6e-40 169.1 89 84.3
CARHR011610 Cardamine hirsuta HOM05D005121 ORTHO05D006115 2.1e-40 168.7 89 86.5
PGR031G1397 Punica granatum HOM05D005121 ORTHO05D006115 2.1e-40 168.7 89 84.3
TWI38G0490 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 2.1e-40 168.7 89 86.5
TWI63G0506 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 2.1e-40 168.7 89 86.5
CDE05G3522 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 2.7e-40 168.3 85 89.4
Rhsim02G0118100 Rhododendron simsii HOM05D005121 ORTHO05D006115 2.7e-40 168.3 89 84.3
THA.LOC104809541 Tarenaya hassleriana HOM05D005121 ORTHO05D006115 2.7e-40 168.3 89 85.4
Atru.chr10.2037 Acer truncatum HOM05D005121 ORTHO05D006115 3.6e-40 167.9 89 85.4
HanXRQChr12g0359441 Helianthus annuus HOM05D005121 ORTHO05D006115 3.6e-40 167.9 88 86.4
Lsat_1_v5_gn_5_78441 Lactuca sativa HOM05D005121 ORTHO05D006115 3.6e-40 167.9 89 85.4
Aa31LG2G9240 Aethionema arabicum HOM05D005121 ORTHO05D006115 4.7e-40 167.5 89 85.4
Lj1A1216T23 Lonicera japonica HOM05D005121 ORTHO05D006115 4.7e-40 167.5 89 83.1
Solyc02g079400.3 Solanum lycopersicum HOM05D005121 ORTHO05D006115 4.7e-40 167.5 89 85.4
Sopen02g024200 Solanum pennellii HOM05D005121 ORTHO05D006115 4.7e-40 167.5 89 85.4
PGSC0003DMG400022347 Solanum tuberosum HOM05D005121 ORTHO05D006115 4.7e-40 167.5 89 85.4
Aqoxy7G03433 Aquilegia oxysepala HOM05D005121 ORTHO05D006115 6.1e-40 167.2 85 88.2
Gohir.A10G019000 Gossypium hirsutum HOM05D005121 ORTHO05D006115 6.1e-40 167.2 85 89.4
Gorai.011G021100 Gossypium raimondii HOM05D005121 ORTHO05D006115 6.1e-40 167.2 85 89.4
Potri.004G026800 Populus trichocarpa HOM05D005121 ORTHO05D006115 6.1e-40 167.2 85 89.4
Sabra11G0027500 Salix brachista HOM05D005121 ORTHO05D006115 6.1e-40 167.2 85 89.4
Duzib235G0052 Durio zibethinus HOM05D005121 ORTHO05D006115 1.0e-39 166.4 89 84.3
Manes.17G032800 Manihot esculenta HOM05D005121 ORTHO05D006115 1.0e-39 166.4 89 84.3
Actinidia24048 Actinidia chinensis HOM05D005121 ORTHO05D006115 1.4e-39 166.0 89 83.1
Potri.011G040000 Populus trichocarpa HOM05D005121 ORTHO05D006115 1.4e-39 166.0 85 88.2
Zm00001eb012710 Zea mays HOM05D005121 ORTHO05D006115 1.4e-39 166.0 89 83.1
EL10Ac6g14131 Beta vulgaris HOM05D005121 ORTHO05D006115 1.8e-39 165.6 85 88.2
Duzib160G0488 Durio zibethinus HOM05D005121 ORTHO05D006115 1.8e-39 165.6 89 83.1
HanXRQChr10g0310231 Helianthus annuus HOM05D005121 ORTHO05D006115 1.8e-39 165.6 88 85.2
Sed0024430 Sechium edule HOM05D005121 ORTHO05D006115 1.8e-39 165.6 89 82.0
arahy.Tifrunner.gnm1.ann1.ANU5MI Arachis hypogaea HOM05D005121 ORTHO05D006115 2.3e-39 165.2 85 88.2
arahy.Tifrunner.gnm1.ann1.FY8LHX Arachis hypogaea HOM05D005121 ORTHO05D006115 2.3e-39 165.2 85 88.2
arahy.Tifrunner.gnm1.ann1.XU4W4S Arachis hypogaea HOM05D005121 ORTHO05D006115 2.3e-39 165.2 85 88.2
CANSAT56G0975 Cannabis sativa HOM05D005121 ORTHO05D006115 2.3e-39 165.2 89 83.1
Os03g0279900 Oryza sativa ssp. japonica HOM05D005121 ORTHO05D006115 3.0e-39 164.9 91 81.3
QL05p080508 Quercus lobata HOM05D005121 ORTHO05D006115 3.0e-39 164.9 85 88.2
CSS0003935 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 3.9e-39 164.5 89 83.1
CSS0043949 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 3.9e-39 164.5 89 83.1
CARHR050750 Cardamine hirsuta HOM05D005121 ORTHO05D006115 3.9e-39 164.5 89 83.1
ClCG09G021600 Citrullus lanatus HOM05D005121 ORTHO05D006115 3.9e-39 164.5 89 82.0
Thhalv10023604m.g Eutrema salsugineum HOM05D005121 ORTHO05D006115 3.9e-39 164.5 89 83.1
FvH4_3g03660 Fragaria vesca HOM05D005121 ORTHO05D006115 3.9e-39 164.5 89 82.0
FAN21G3866 Fragaria x ananassa HOM05D005121 ORTHO05D006115 3.9e-39 164.5 89 82.0
FAN25G2418 Fragaria x ananassa HOM05D005121 ORTHO05D006115 3.9e-39 164.5 89 82.0
RcHm_v2.0_Chr5g0005701 Rosa chinensis HOM05D005121 ORTHO05D006115 3.9e-39 164.5 89 82.0
Thecc.06G202500 Theobroma cacao HOM05D005121 ORTHO05D006115 3.9e-39 164.5 85 87.1
COL.COLO4_31636 Corchorus olitorius HOM05D005121 ORTHO05D006115 5.2e-39 164.1 85 87.1
Carub.0002s0357 Capsella rubella HOM05D005121 ORTHO05D006115 6.7e-39 163.7 89 82.0
AL2G14620 Arabidopsis lyrata HOM05D005121 ORTHO05D006115 8.8e-39 163.3 89 82.0
BcaB04g20348 Brassica carinata HOM05D005121 ORTHO05D006115 8.8e-39 163.3 89 82.0
BcaC06g31855 Brassica carinata HOM05D005121 ORTHO05D006115 8.8e-39 163.3 89 83.1
A01p30380 Brassica napus HOM05D005121 ORTHO05D006115 8.8e-39 163.3 89 82.0
C01p38590 Brassica napus HOM05D005121 ORTHO05D006115 8.8e-39 163.3 89 82.0
BraA01t03171Z Brassica rapa HOM05D005121 ORTHO05D006115 8.8e-39 163.3 89 82.0
Sp2g02960 Schrenkiella parvula HOM05D005121 ORTHO05D006115 8.8e-39 163.3 89 82.0
unitig_26.g9381 Utricularia gibba HOM05D005121 ORTHO05D006115 8.8e-39 163.3 91 80.2
MELO3C013201.2 Cucumis melo HOM05D005121 ORTHO05D006115 1.1e-38 162.9 89 80.9
CsaV3_6G007300 Cucumis sativus L. HOM05D005121 ORTHO05D006115 1.1e-38 162.9 89 80.9
CsaV3_7G021490 Cucumis sativus L. HOM05D005121 ORTHO05D006115 1.1e-38 162.9 89 80.9
AT1G61620 Arabidopsis thaliana HOM05D005121 ORTHO05D006115 1.5e-38 162.5 89 80.9
Cfa000313 Carpinus fangiana HOM05D005121 ORTHO05D006115 1.5e-38 162.5 89 82.0
ECA234G4718 Erigeron canadensis HOM05D005121 ORTHO05D006115 1.5e-38 162.5 85 85.9
Manes.16G019177 Manihot esculenta HOM05D005121 ORTHO05D006115 1.5e-38 162.5 89 82.0
Oeu027963.1 Olea europaea HOM05D005121 ORTHO05D006115 1.5e-38 162.5 85 89.4
CiPaw.10G115700 Carya illinoinensis HOM05D005121 ORTHO05D006115 2.0e-38 162.2 89 82.0
DCAR_008096 Daucus carota HOM05D005121 ORTHO05D006115 2.0e-38 162.2 89 80.9
Zm00001eb397440 Zea mays HOM05D005121 ORTHO05D006115 2.0e-38 162.2 89 80.9
MELO3C022396.2 Cucumis melo HOM05D005121 ORTHO05D006115 2.6e-38 161.8 89 79.8
Peaxi162Scf00047g00079 Petunia axillaris HOM05D005121 ORTHO05D006115 2.6e-38 161.8 80 88.8
Prupe.4G033800 Prunus persica HOM05D005121 ORTHO05D006115 2.6e-38 161.8 89 80.9
Ca_00225_v3 Cicer arietinum L. HOM05D005121 ORTHO05D006115 3.3e-38 161.4 89 80.9
AUR62012514 Chenopodium quinoa HOM05D005121 ORTHO05D006115 4.4e-38 161.0 89 82.0
AUR62014685 Chenopodium quinoa HOM05D005121 ORTHO05D006115 4.4e-38 161.0 89 82.0
ClCG06G001360 Citrullus lanatus HOM05D005121 ORTHO05D006115 4.4e-38 161.0 89 79.8
Zm00001eb397450 Zea mays HOM05D005121 ORTHO05D006115 4.4e-38 161.0 89 80.9
Zm00001eb397460 Zea mays HOM05D005121 ORTHO05D006115 4.4e-38 161.0 89 80.9
Zm00001eb397470 Zea mays HOM05D005121 ORTHO05D006115 4.4e-38 161.0 89 80.9
Zm00001eb397480 Zea mays HOM05D005121 ORTHO05D006115 4.4e-38 161.0 89 80.9
Mapoly0029s0083 Marchantia polymorpha HOM05D005121 ORTHO05D006115 5.7e-38 160.6 89 78.7
Hund21294 Selenicereus undatus HOM05D005121 ORTHO05D006115 5.7e-38 160.6 89 83.1
Lj6g0004146 Lotus japonicus HOM05D005121 ORTHO05D006115 9.7e-38 159.8 89 79.8
MSTRG.7276 Avicennia marina HOM05D005121 ORTHO05D006115 1.7e-37 159.1 89 78.7
Migut.H01530 Erythranthe guttata HOM05D005121 ORTHO05D006115 1.7e-37 159.1 88 80.7
Lalb_Chr18g0060031 Lupinus albus HOM05D005121 ORTHO05D006115 1.7e-37 159.1 85 83.5
Oeu030047.2 Olea europaea HOM05D005121 ORTHO05D006115 1.7e-37 159.1 80 91.2
Sc24g0000680 Simmondsia chinensis HOM05D005121 ORTHO05D006115 1.7e-37 159.1 89 80.9
vmacro15853 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 1.7e-37 159.1 80 88.8
AagrBONN_evm.TU.Sc2ySwM_344.3296 Anthoceros agrestis HOM05D005121 ORTHO05D006115 2.8e-37 158.3 80 86.2
FAN11G1262 Fragaria x ananassa HOM05D005121 ORTHO05D006115 2.8e-37 158.3 80 87.5
FAN16G2329 Fragaria x ananassa HOM05D005121 ORTHO05D006115 3.7e-37 157.9 86 81.4
Medtr2g011480 Medicago truncatula HOM05D005121 ORTHO05D006115 4.8e-37 157.5 89 79.8
Psat1g209560 Pisum sativum HOM05D005121 ORTHO05D006115 4.8e-37 157.5 89 79.8
Sabra04G0015300 Salix brachista HOM05D005121 ORTHO05D006115 4.8e-37 157.5 80 88.8
TPR.G19604 Trifolium pratense HOM05D005121 ORTHO05D006115 4.8e-37 157.5 89 79.8
VMungo0540G0293 Vigna mungo HOM05D005121 ORTHO05D006115 4.8e-37 157.5 85 83.5
Ah.09g236480 Amaranthus hybridus HOM05D005121 ORTHO05D006115 6.3e-37 157.1 79 88.6
BolC1t03821H Brassica oleracea HOM05D005121 ORTHO05D006115 8.2e-37 156.8 80 86.2
Glyma.13G247800 Glycine max HOM05D005121 ORTHO05D006115 8.2e-37 156.8 89 79.8
Migut.M01229 Erythranthe guttata HOM05D005121 ORTHO05D006115 1.1e-36 156.4 89 79.8
Phvul.006G193700 Phaseolus vulgaris HOM05D005121 ORTHO05D006115 1.1e-36 156.4 85 82.4
Glyma.15G066000 Glycine max HOM05D005121 ORTHO05D006115 1.8e-36 155.6 85 83.5
Pp3c9_6940 Physcomitrium patens HOM05D005121 ORTHO05D006115 1.8e-36 155.6 84 82.1
SGA_v2.0_scaffold114G31993 Striga asiatica HOM05D005121 ORTHO05D006115 2.4e-36 155.2 85 83.5
DCAR_004161 Daucus carota HOM05D005121 ORTHO05D006115 4.1e-36 154.5 85 81.2
SMO147G0402 Selaginella moellendorffii HOM05D005121 ORTHO05D006115 4.1e-36 154.5 91 79.1
Haze_06613 Corylus avellana HOM05D005121 ORTHO05D006115 7.0e-36 153.7 79 86.1
CBR_g4035 Chara braunii HOM05D005121 ORTHO05D006115 9.1e-36 153.3 80 86.2
Pp3c15_12040 Physcomitrium patens HOM05D005121 ORTHO05D006115 2.6e-35 151.8 82 81.7
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 6.3e-29 130.6 79 78.5
Hma1.2p1_0155F.1_g068340 Hydrangea macrophylla HOM05D005121 ORTHO05D006115 5.3e-28 127.5 79 72.2
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 6.8e-23 110.5 58 84.5
SGA_v2.0_scaffold7G03907 Striga asiatica HOM05D005121 ORTHO05D006115 3.1e-20 101.7 64 73.4
Cre02.g142086 Chlamydomonas reinhardtii HOM05D005121 ORTHO05D006115 9.8e-14 80.1 89 49.4
MCO09G390 Micromonas commoda HOM05D005121 ORTHO05D006115 2.2e-13 79.0 79 53.2
unitig_749.g13632 Utricularia gibba HOM05D005121 ORTHO05D006115 1.8e-12 75.9 36 94.4
Sed0008986 Sechium edule HOM05D005121 ORTHO05D006115 1.6e-11 72.8 80 48.8
PRCOL_00001084 Prasinoderma coloniale HOM05D005121 ORTHO05D006115 5.0e-10 67.8 79 44.3
Cfa022197 Carpinus fangiana HOM05D005121 ORTHO05D006115 5.6e-09 64.3 103 37.9


User provided reference genes

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