Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1131G034 Amborella trichopoda HOM05D003548 ORTHO05D004066 2.3e-205 719.5 659 100.0
MBI06_g29318_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 4.1e-21 107.5 293 32.4
CSS0019271 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 8.5e-19 99.8 311 31.5
CSS0042414 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 8.5e-19 99.8 311 31.5
TAR629G2865 Trochodendron aralioides HOM05D003548 ORTHO05D004066 8.5e-19 99.8 301 41.2
PSO063G3847 Papaver somniferum HOM05D003548 ORTHO05D004066 7.2e-18 96.7 672 59.5
TAR636G0920 Trochodendron aralioides HOM05D003548 ORTHO05D004066 1.2e-17 95.9 315 42.5
Aqoxy5G04044 Aquilegia oxysepala HOM05D003548 ORTHO05D004066 2.1e-17 95.1 664 55.7
Nn1g01756 Nelumbo nucifera HOM05D003548 ORTHO05D004066 4.7e-17 94.0 315 33.0
PSO170G6721 Papaver somniferum HOM05D003548 ORTHO05D004066 4.7e-17 94.0 674 60.5
TWI15G1126 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 6.1e-17 93.6 307 34.2
Duzib205G0585 Durio zibethinus HOM05D003548 ORTHO05D004066 1.8e-16 92.0 681 57.6
Cc08_g15520 Coffea canephora HOM05D003548 ORTHO05D004066 3.0e-16 91.3 309 32.4
MBI07_g38645_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 3.0e-16 91.3 297 36.0
TWI81G0889 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 4.0e-16 90.9 303 32.7
CDE10G0521 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 5.2e-16 90.5 663 55.4
Oeu059583.1 Olea europaea HOM05D003548 ORTHO05D004066 1.5e-15 89.0 301 29.9
Ciclev10019140m.g Citrus clementina HOM05D003548 ORTHO05D004066 4.4e-15 87.4 311 41.2
Dinv37570 Davidia involucrata HOM05D003548 ORTHO05D004066 5.7e-15 87.0 321 30.8
TWI60G0243 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 7.5e-15 86.7 301 36.5
Duzib068G0600 Durio zibethinus HOM05D003548 ORTHO05D004066 2.8e-14 84.7 139 40.3
FAN13G0102 Fragaria x ananassa HOM05D003548 ORTHO05D004066 2.8e-14 84.7 140 40.0
DCAR_008526 Daucus carota HOM05D003548 ORTHO05D004066 4.9e-14 84.0 301 29.6
Thecc.03G289200 Theobroma cacao HOM05D003548 ORTHO05D004066 4.9e-14 84.0 684 57.5
CDE04G3080 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 8.3e-14 83.2 544 63.2
FAN04G1462 Fragaria x ananassa HOM05D003548 ORTHO05D004066 8.3e-14 83.2 142 40.8
Phvul.002G294600 Phaseolus vulgaris HOM05D003548 ORTHO05D004066 8.3e-14 83.2 271 32.5
Potri.001G097200 Populus trichocarpa HOM05D003548 ORTHO05D004066 8.3e-14 83.2 142 41.5
Sed0010954 Sechium edule HOM05D003548 ORTHO05D004066 8.3e-14 83.2 316 29.1
FAN18G1037 Fragaria x ananassa HOM05D003548 ORTHO05D004066 1.1e-13 82.8 142 40.1
TPR.G3387 Trifolium pratense HOM05D000059 ORTHO05D004066 1.4e-13 82.4 308 31.2
FAN04G2241 Fragaria x ananassa HOM05D003548 ORTHO05D004066 1.8e-13 82.0 145 37.2
Aqoxy7G00221 Aquilegia oxysepala HOM05D003548 ORTHO05D004066 2.4e-13 81.6 113 46.0
COL.COLO4_08334 Corchorus olitorius HOM05D003548 ORTHO05D004066 2.4e-13 81.6 127 43.3
MELO3C005727.2 Cucumis melo HOM05D003548 ORTHO05D004066 2.4e-13 81.6 303 30.0
FvH4_5g03650 Fragaria vesca HOM05D003548 ORTHO05D004066 3.1e-13 81.3 142 39.4
Manes.02G014900 Manihot esculenta HOM05D003548 ORTHO05D004066 3.1e-13 81.3 142 43.0
Sabra01G0072500 Salix brachista HOM05D003548 ORTHO05D004066 3.1e-13 81.3 308 30.2
Duzib084G0464 Durio zibethinus HOM05D003548 ORTHO05D004066 4.1e-13 80.9 140 42.1
Peaxi162Scf00074g00156 Petunia axillaris HOM05D003548 ORTHO05D004066 4.1e-13 80.9 127 44.9
GSVIVG01019448001 Vitis vinifera HOM05D003548 ORTHO05D004066 4.1e-13 80.9 317 30.3
Gorai.003G083700 Gossypium raimondii HOM05D003548 ORTHO05D004066 5.4e-13 80.5 316 40.5
Eucgr.E00807 Eucalyptus grandis HOM05D003548 ORTHO05D004066 7.0e-13 80.1 165 37.6
Nitab4.5_0007898g0040 Nicotiana tabacum HOM05D000302 ORTHO05D000334 7.0e-13 80.1 127 44.1
Atru.chr9.2080 Acer truncatum HOM05D003548 ORTHO05D004066 9.2e-13 79.7 278 34.2
ECA246G0635 Erigeron canadensis HOM05D003548 ORTHO05D004066 9.2e-13 79.7 292 30.5
Gohir.A02G103700 Gossypium hirsutum HOM05D003548 ORTHO05D004066 1.2e-12 79.3 318 40.6
SGA_v2.0_scaffold96G28999 Striga asiatica HOM05D003548 ORTHO05D004066 1.2e-12 79.3 298 36.9
Glyma.05G213300 Glycine max HOM05D003548 ORTHO05D004066 1.6e-12 79.0 307 35.8
Hma1.2p1_0216F.1_g091270 Hydrangea macrophylla HOM05D003548 ORTHO05D004066 1.6e-12 79.0 128 42.2
QL02p032544 Quercus lobata HOM05D003548 ORTHO05D004066 1.6e-12 79.0 137 41.6
Migut.A00697 Erythranthe guttata HOM05D003548 ORTHO05D004066 2.0e-12 78.6 668 55.2
Nitab4.5_0000966g0040 Nicotiana tabacum HOM05D000302 ORTHO05D000334 2.0e-12 78.6 128 43.0
CsaV3_5G002270 Cucumis sativus L. HOM05D003548 ORTHO05D004066 2.7e-12 78.2 303 29.4
Potri.003G134200 Populus trichocarpa HOM05D003548 ORTHO05D004066 2.7e-12 78.2 307 36.5
Dinv38885 Davidia involucrata HOM05D003548 ORTHO05D004066 3.5e-12 77.8 311 29.3
Gohir.D03G080200 Gossypium hirsutum HOM05D003548 ORTHO05D004066 3.5e-12 77.8 142 38.0
Sed0003878 Sechium edule HOM05D003548 ORTHO05D004066 3.5e-12 77.8 312 28.5
VMungo0251G1700 Vigna mungo HOM05D003548 ORTHO05D004066 3.5e-12 77.8 272 39.3
MD06G1096100 Malus domestica HOM05D003548 ORTHO05D004066 4.5e-12 77.4 311 28.9
SalBow1G6595 Salvia bowleyana HOM05D003548 ORTHO05D004066 4.5e-12 77.4 307 33.6
CiPaw.12G087100 Carya illinoinensis HOM05D003548 ORTHO05D004066 5.9e-12 77.0 131 41.2
Cfa012267 Carpinus fangiana HOM05D003548 ORTHO05D004066 7.7e-12 76.6 286 36.0
Prupe.5G110700 Prunus persica HOM05D003548 ORTHO05D004066 7.7e-12 76.6 313 31.6
arahy.Tifrunner.gnm1.ann1.36D870 Arachis hypogaea HOM05D003548 ORTHO05D004066 1.0e-11 76.3 306 40.5
FAN13G1218 Fragaria x ananassa HOM05D003548 ORTHO05D004066 1.0e-11 76.3 126 42.9
Sopen08g030060 Solanum pennellii HOM05D003548 ORTHO05D004066 1.0e-11 76.3 150 39.3
PGSC0003DMG400012172 Solanum tuberosum HOM05D003548 ORTHO05D004066 1.0e-11 76.3 150 39.3
CANSAT21G0595 Cannabis sativa HOM05D003548 ORTHO05D004066 1.3e-11 75.9 312 29.8
Dinv35294 Davidia involucrata HOM05D003548 ORTHO05D004066 1.3e-11 75.9 130 41.5
Glyma.08G019800 Glycine max HOM05D003548 ORTHO05D004066 1.3e-11 75.9 148 37.8
Gohir.D03G080300 Gossypium hirsutum HOM05D003548 ORTHO05D004066 1.3e-11 75.9 314 40.4
MD14G1116300 Malus domestica HOM05D003548 ORTHO05D004066 1.3e-11 75.9 307 29.3
Sabra03G0096600 Salix brachista HOM05D003548 ORTHO05D004066 1.3e-11 75.9 132 43.2
SalBow1G7748 Salvia bowleyana HOM05D003548 ORTHO05D004066 1.3e-11 75.9 675 54.8
Solyc08g081760.3 Solanum lycopersicum HOM05D003548 ORTHO05D004066 1.7e-11 75.5 145 40.7
PGSC0003DMG400028194 Solanum tuberosum HOM05D003548 ORTHO05D004066 1.7e-11 75.5 140 37.9
THA.LOC104809354 Tarenaya hassleriana HOM05D003548 ORTHO05D004066 1.7e-11 75.5 143 39.2
Ca_10964_v3 Cicer arietinum L. HOM05D003548 ORTHO05D004066 2.3e-11 75.1 125 40.0
DCAR_006852 Daucus carota HOM05D003548 ORTHO05D004066 2.3e-11 75.1 297 32.0
Oeu042375.2 Olea europaea HOM05D003548 ORTHO05D004066 2.9e-11 74.7 307 29.3
Peaxi162Scf00102g01614 Petunia axillaris HOM05D003548 ORTHO05D004066 2.9e-11 74.7 109 45.9
PGR031G0552 Punica granatum HOM05D003548 ORTHO05D004066 2.9e-11 74.7 303 39.9
Thhalv10023333m.g Eutrema salsugineum HOM05D003548 ORTHO05D004066 3.8e-11 74.3 308 30.5
Gorai.006G208300 Gossypium raimondii HOM05D003548 ORTHO05D004066 3.8e-11 74.3 307 36.2
arahy.Tifrunner.gnm1.ann1.59PT6M Arachis hypogaea HOM05D003548 ORTHO05D004066 5.0e-11 73.9 681 58.1
Haze_08718 Corylus avellana HOM05D003548 ORTHO05D004066 5.0e-11 73.9 136 40.4
Gohir.D09G185600 Gossypium hirsutum HOM05D003548 ORTHO05D004066 6.6e-11 73.6 307 36.2
Cc02_g02080 Coffea canephora HOM05D003548 ORTHO05D004066 8.6e-11 73.2 111 43.2
CAN.G532.68 Capsicum annuum HOM05D003548 ORTHO05D004066 1.1e-10 72.8 127 40.9
Lalb_Chr16g0390341 Lupinus albus HOM05D003548 ORTHO05D004066 1.1e-10 72.8 138 37.0
Dinv28355 Davidia involucrata HOM05D003548 ORTHO05D004066 1.5e-10 72.4 130 39.2
Lj4g0009292 Lotus japonicus HOM05D003548 ORTHO05D004066 1.9e-10 72.0 308 39.6
AL2G10890 Arabidopsis lyrata HOM05D003548 ORTHO05D004066 2.5e-10 71.6 302 29.8
BraA09t37059Z Brassica rapa HOM05D003548 ORTHO05D004066 3.3e-10 71.2 310 30.6
Sc01g0009980 Simmondsia chinensis HOM05D003548 ORTHO05D004066 3.3e-10 71.2 281 41.6
CiPaw.11G126900 Carya illinoinensis HOM05D003548 ORTHO05D004066 4.3e-10 70.9 185 34.6
Psat7g029120 Pisum sativum HOM05D003548 ORTHO05D004066 4.3e-10 70.9 154 35.1
ClCG01G002150 Citrullus lanatus HOM05D003548 ORTHO05D004066 5.6e-10 70.5 117 42.7
AT1G64140 Arabidopsis thaliana HOM05D003548 ORTHO05D004066 7.3e-10 70.1 302 28.8
PGSC0003DMG400005830 Solanum tuberosum HOM05D003548 ORTHO05D004066 7.3e-10 70.1 306 28.4
Oeu063042.1 Olea europaea HOM05D003548 ORTHO05D004066 9.5e-10 69.7 303 38.3
HanXRQChr17g0533931 Helianthus annuus HOM05D003548 ORTHO05D004066 1.2e-09 69.3 124 42.7
Nitab4.5_0005339g0010 Nicotiana tabacum HOM05D003548 ORTHO05D004066 1.6e-09 68.9 316 29.1
Gohir.A09G191100 Gossypium hirsutum HOM05D003548 ORTHO05D004066 2.1e-09 68.6 138 37.0
PSO135G0411 Papaver somniferum HOM05D003548 ORTHO05D004066 2.1e-09 68.6 118 40.7
PSO384G2366 Papaver somniferum HOM05D003548 ORTHO05D004066 2.1e-09 68.6 122 40.2
Zm00001eb159560 Zea mays HOM05D003548 ORTHO05D004066 2.1e-09 68.6 106 43.4
CARHR046800 Cardamine hirsuta HOM05D003548 ORTHO05D004066 2.8e-09 68.2 127 38.6
Eucgr.D01792 Eucalyptus grandis HOM05D003548 ORTHO05D004066 2.8e-09 68.2 149 36.9
MSTRG.25643 Avicennia marina HOM05D003548 ORTHO05D004066 3.6e-09 67.8 301 39.5
CSS0034195 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 3.6e-09 67.8 155 37.4
Hund11425 Selenicereus undatus HOM05D000154 ORTHO05D004066 3.6e-09 67.8 183 34.4
Aa31LG2G1190 Aethionema arabicum HOM05D003548 ORTHO05D004066 4.7e-09 67.4 305 40.0
Nitab4.5_0002944g0150 Nicotiana tabacum HOM05D003548 ORTHO05D004066 6.1e-09 67.0 171 34.5
Hma1.2p1_0142F.1_g064160 Hydrangea macrophylla HOM05D003548 ORTHO05D004066 8.0e-09 66.6 117 40.2
Lj2P175T19 Lonicera japonica HOM05D003548 ORTHO05D004066 8.0e-09 66.6 137 39.4
BcaC04g22534 Brassica carinata HOM05D003548 ORTHO05D004066 1.0e-08 66.2 318 28.9
C09p18070 Brassica napus HOM05D003548 ORTHO05D004066 1.0e-08 66.2 318 28.9
Carub.0002s0067 Capsella rubella HOM05D003548 ORTHO05D004066 1.0e-08 66.2 278 29.9
MBI07_g06320_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 1.4e-08 65.9 113 42.5
Sopen08g004030 Solanum pennellii HOM05D003548 ORTHO05D004066 1.4e-08 65.9 306 27.5
A09p14120 Brassica napus HOM05D003548 ORTHO05D004066 1.8e-08 65.5 144 34.7
BolC9t54704H Brassica oleracea HOM05D003548 ORTHO05D004066 1.8e-08 65.5 304 29.6
Actinidia08610 Actinidia chinensis HOM05D003548 ORTHO05D004066 2.3e-08 65.1 122 36.9
C09p17010 Brassica napus HOM05D003548 ORTHO05D004066 3.0e-08 64.7 146 38.4
Ah.12g052120 Amaranthus hybridus HOM05D000265 ORTHO05D000161 4.0e-08 64.3 182 34.1
BolC9t54599H Brassica oleracea HOM05D003548 ORTHO05D004066 4.0e-08 64.3 146 37.7
Glyma.01G223400 Glycine max HOM05D003548 ORTHO05D004066 4.0e-08 64.3 316 27.5
MSTRG.11944 Avicennia marina HOM05D003548 ORTHO05D004066 5.2e-08 63.9 128 39.1
BcaC04g22655 Brassica carinata HOM05D003548 ORTHO05D004066 5.2e-08 63.9 144 34.7
AUR62010777 Chenopodium quinoa HOM05D003548 ORTHO05D004066 5.2e-08 63.9 115 40.9
SEGI_28658 Sequoiadendron giganteum HOM05D003548 ORTHO05D004066 5.2e-08 63.9 176 33.5
Solyc08g008180.3 Solanum lycopersicum HOM05D003548 ORTHO05D004066 5.2e-08 63.9 306 27.5
Actinidia34177 Actinidia chinensis HOM05D003548 ORTHO05D004066 6.8e-08 63.5 123 37.4
Medtr8g099105 Medicago truncatula HOM05D003548 ORTHO05D004066 6.8e-08 63.5 315 29.8
PGR042G3215 Punica granatum HOM05D003548 ORTHO05D004066 8.9e-08 63.2 141 34.8
Sp2g00590 Schrenkiella parvula HOM05D003548 ORTHO05D004066 8.9e-08 63.2 145 38.6
Oeu050927.1 Olea europaea HOM05D003548 ORTHO05D004066 1.2e-07 62.8 187 32.1
Oeu050928.1 Olea europaea HOM05D003548 ORTHO05D004066 1.2e-07 62.8 187 32.1
Phvul.002G161400 Phaseolus vulgaris HOM05D003548 ORTHO05D004066 1.2e-07 62.8 137 38.7
Rhsim02G0237300 Rhododendron simsii HOM05D003548 ORTHO05D004066 1.2e-07 62.8 143 35.7
A09p14950 Brassica napus HOM05D003548 ORTHO05D004066 1.5e-07 62.4 302 39.7
BraA09t37140Z Brassica rapa HOM05D003548 ORTHO05D004066 1.5e-07 62.4 302 39.7
HPP92_023971 Vanilla planifolia HOM05D003548 ORTHO05D004066 2.0e-07 62.0 118 39.8
EL10Ac5g12854 Beta vulgaris HOM05D003548 ORTHO05D004066 2.6e-07 61.6 169 33.7
BcaB07g31525 Brassica carinata HOM05D003548 ORTHO05D004066 3.4e-07 61.2 141 34.8
Oeu003337.1 Olea europaea HOM05D003548 ORTHO05D004066 3.4e-07 61.2 182 32.4
ECA233G1322 Erigeron canadensis HOM05D003548 ORTHO05D004066 4.4e-07 60.8 264 29.9
EL10Ac3g05370 Beta vulgaris HOM05D003548 ORTHO05D004066 5.7e-07 60.5 126 39.7
AUR62019776 Chenopodium quinoa HOM05D003548 ORTHO05D004066 5.7e-07 60.5 173 36.4
BcaB07g31439 Brassica carinata HOM05D003548 ORTHO05D008486 7.5e-07 60.1 303 27.7
Lj1P1010T36 Lonicera japonica HOM05D003548 ORTHO05D004066 9.8e-07 59.7 127 34.6
Os06g0523100 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 1.3e-06 59.3 123 35.8
AUR62021071 Chenopodium quinoa HOM05D003548 ORTHO05D004066 2.2e-06 58.5 103 36.9
Zm00001eb344910 Zea mays HOM05D003548 ORTHO05D004066 2.2e-06 58.5 142 32.4
AUR62031460 Chenopodium quinoa HOM05D003548 ORTHO05D004066 2.9e-06 58.2 103 40.8
CDE02G2034 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 3.7e-06 57.8 111 38.7
Rhsim02G0237200 Rhododendron simsii HOM05D003548 ORTHO05D004066 8.3e-06 56.6 123 38.2


User provided reference genes

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