Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1131G022 Amborella trichopoda HOM05D005766 ORTHO05D007002 0.0e+00 1291.6 665 100.0
TAR629G2087 Trochodendron aralioides HOM05D005766 ORTHO05D007002 3.4e-249 865.1 670 67.2
Nn1g01746 Nelumbo nucifera HOM05D005766 ORTHO05D007002 2.9e-240 835.5 670 64.8
PSO170G0163 Papaver somniferum HOM05D005766 ORTHO05D007002 1.0e-237 827.0 665 63.0
Prupe.2G304700 Prunus persica HOM05D005766 ORTHO05D007002 6.9e-234 814.3 670 62.2
Hma1.2p1_0327F.1_g126600 Hydrangea macrophylla HOM05D005766 ORTHO05D007002 2.6e-233 812.4 664 63.1
Aqoxy5G04049 Aquilegia oxysepala HOM05D005766 ORTHO05D007002 9.9e-233 810.4 671 64.5
GSVIVG01028775001 Vitis vinifera HOM05D005766 ORTHO05D007002 9.3e-231 803.9 669 62.9
Cfa016332 Carpinus fangiana HOM05D005766 ORTHO05D007002 1.6e-230 803.1 678 62.2
CsaV3_3G021770 Cucumis sativus L. HOM05D005766 ORTHO05D007002 4.6e-230 801.6 666 61.3
Duzib205G0439 Durio zibethinus HOM05D005766 ORTHO05D007002 3.9e-229 798.5 666 63.4
Thecc.03G188900 Theobroma cacao HOM05D005766 ORTHO05D007002 3.3e-228 795.4 674 62.5
MELO3C006963.2 Cucumis melo HOM05D005766 ORTHO05D007002 8.1e-227 790.8 673 60.9
MD07G1282600 Malus domestica HOM05D005766 ORTHO05D007002 1.8e-226 789.6 712 58.3
Rhsim03G0196600 Rhododendron simsii HOM05D005766 ORTHO05D007002 2.6e-225 785.8 689 60.4
Cc02_g02130 Coffea canephora HOM05D005766 ORTHO05D007002 6.4e-224 781.2 666 60.8
PGR004G1861 Punica granatum HOM05D005766 ORTHO05D007002 1.4e-223 780.0 669 61.1
Gohir.A12G254600 Gossypium hirsutum HOM05D005766 ORTHO05D007002 4.2e-223 778.5 668 63.0
CANSAT21G0601 Cannabis sativa HOM05D005766 ORTHO05D007002 9.3e-223 777.3 674 60.5
Manes.14G020100 Manihot esculenta HOM05D005766 ORTHO05D007002 1.2e-222 776.9 641 64.1
Gorai.008G272400 Gossypium raimondii HOM05D005766 ORTHO05D007002 4.6e-222 775.0 687 60.7
Gohir.D12G254700 Gossypium hirsutum HOM05D005766 ORTHO05D007002 1.8e-221 773.1 667 62.2
Potri.015G026100 Populus trichocarpa HOM05D005766 ORTHO05D007002 3.0e-221 772.3 666 60.1
Lsat_1_v5_gn_2_61121 Lactuca sativa HOM05D005766 ORTHO05D007002 1.9e-220 769.6 671 62.0
Phvul.007G077400 Phaseolus vulgaris HOM05D005766 ORTHO05D007002 5.6e-220 768.1 668 60.6
Lj5g0016487 Lotus japonicus HOM05D005766 ORTHO05D007002 6.9e-218 761.1 667 59.8
MD01G1212200 Malus domestica HOM05D005766 ORTHO05D007002 1.5e-217 760.0 663 60.3
Glyma.10G228700 Glycine max HOM05D005766 ORTHO05D007002 5.8e-217 758.1 676 59.3
Glyma.20G164300 Glycine max HOM05D005766 ORTHO05D007002 1.1e-215 753.8 672 58.9
Eucgr.K00307 Eucalyptus grandis HOM05D005766 ORTHO05D007002 7.1e-215 751.1 666 60.4
TPR.G7746 Trifolium pratense HOM05D005766 ORTHO05D007002 1.8e-213 746.5 682 57.6
FvH4_7g30700 Fragaria vesca HOM05D005766 ORTHO05D007002 1.6e-211 740.0 646 61.1
Migut.F00259 Erythranthe guttata HOM05D005766 ORTHO05D007002 2.1e-211 739.6 666 58.0
vmacro06594 Vaccinium macrocarpon HOM05D005766 ORTHO05D007002 2.4e-210 736.1 744 55.1
MBI07_g26934_MAGBIO Magnolia biondii HOM05D005766 ORTHO05D007002 2.1e-206 723.0 686 58.0
Sed0015140 Sechium edule HOM05D005766 ORTHO05D007002 7.9e-206 721.1 627 60.3
Ah.07g206240 Amaranthus hybridus HOM05D005766 ORTHO05D007002 8.7e-205 717.6 699 54.4
ClCG05G008560 Citrullus lanatus HOM05D005766 ORTHO05D007002 3.8e-200 702.2 671 56.0
Ca_10701_v3 Cicer arietinum L. HOM05D005766 ORTHO05D007002 6.1e-198 694.9 668 55.2
Lj1A1010T47 Lonicera japonica HOM05D005766 ORTHO05D007002 1.5e-193 680.2 669 56.2
Haze_00083 Corylus avellana HOM05D005766 ORTHO05D007002 3.8e-192 675.6 777 52.0
SalBow4G0986 Salvia bowleyana HOM05D005766 ORTHO05D007002 8.5e-192 674.5 661 54.8
arahy.Tifrunner.gnm1.ann1.M1FPNI Arachis hypogaea HOM05D005766 ORTHO05D007002 2.2e-187 659.8 639 55.7
Sabra15G0019200 Salix brachista HOM05D005766 ORTHO05D007002 5.3e-186 655.2 685 55.5
Mapoly0113s0021 Marchantia polymorpha HOM05D005766 ORTHO05D007002 8.5e-184 647.9 681 49.2
CiPaw.05G259700 Carya illinoinensis HOM05D005766 ORTHO05D007002 2.7e-182 642.9 553 61.7
arahy.Tifrunner.gnm1.ann1.8957SA Arachis hypogaea HOM05D005766 ORTHO05D007002 4.7e-182 642.1 681 52.1
ECA238G0894 Erigeron canadensis HOM05D005766 ORTHO05D000105 3.1e-178 629.4 572 58.0
TWI39G0494 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 9.1e-178 627.9 674 51.8
Hund04814 Selenicereus undatus HOM05D005766 ORTHO05D007002 2.1e-174 616.7 672 50.7
Dinv28359 Davidia involucrata HOM05D005766 ORTHO05D007002 6.7e-173 611.7 554 60.3
FAN06G2288 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.7e-171 607.1 681 51.5
FAN10G0167 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.0e-168 597.8 701 49.5
FAN10G3945 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.3e-168 597.4 701 49.4
CSS0024367 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 3.4e-164 582.8 529 59.5
CSS0041625 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 3.4e-164 582.8 529 59.5
SGA_v2.0_scaffold192G40599 Striga asiatica HOM05D005766 ORTHO05D007002 7.5e-164 581.6 565 56.5
RcHm_v2.0_Chr1g0379661 Rosa chinensis HOM05D005766 ORTHO05D007002 7.7e-161 571.6 495 61.6
Lalb_Chr06g0161411 Lupinus albus HOM05D005766 ORTHO05D007002 4.7e-158 562.4 500 60.2
FAN03G2278 Fragaria x ananassa HOM05D005766 ORTHO05D007002 2.3e-157 560.1 687 48.2
HanXRQChr14g0440231 Helianthus annuus HOM05D005766 ORTHO05D007002 3.0e-157 559.7 331 81.0
Sopen12g011340 Solanum pennellii HOM05D005766 ORTHO05D007002 2.4e-154 550.1 473 61.9
HPP92_022503 Vanilla planifolia HOM05D005766 ORTHO05D007002 2.5e-151 540.0 502 56.8
Cpa.g.sc3.14 Carica papaya HOM05D005766 ORTHO05D007002 3.3e-151 539.7 705 45.8
Peaxi162Scf00023g00720 Petunia axillaris HOM05D005766 ORTHO05D007002 6.8e-149 531.9 551 55.4
Sc13g0009380 Simmondsia chinensis HOM05D005766 ORTHO05D007002 4.9e-147 525.8 488 57.8
Medtr1g099380 Medicago truncatula HOM05D005766 ORTHO05D007002 6.4e-147 525.4 440 60.9
Psat6g194920 Pisum sativum HOM05D005766 ORTHO05D007002 8.3e-147 525.0 338 74.3
Oeu003335.2 Olea europaea HOM05D005766 ORTHO05D007002 7.0e-146 521.9 459 60.6
QL11p056564 Quercus lobata HOM05D005766 ORTHO05D007002 5.0e-144 515.8 347 73.5
EL10Ac3g05375 Beta vulgaris HOM05D005766 ORTHO05D007002 1.2e-140 504.6 329 72.9
AagrBONN_evm.TU.Sc2ySwM_344.4899 Anthoceros agrestis HOM05D005766 ORTHO05D007002 1.5e-140 504.2 677 42.1
Ciclev10004767m.g Citrus clementina HOM05D005766 ORTHO05D007002 2.2e-139 500.4 513 55.9
Atru.chr1.315 Acer truncatum HOM05D005766 ORTHO05D007002 3.7e-139 499.6 423 63.1
FAN06G1885 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.3e-131 474.6 491 54.6
CDE02G1402 Ceratophyllum demersum HOM05D001977 ORTHO05D002246 1.9e-130 470.7 382 63.4
FAN01G0765 Fragaria x ananassa HOM05D005766 ORTHO05D007002 3.5e-129 466.5 491 54.2
SEGI_39054 Sequoiadendron giganteum HOM05D005766 ORTHO05D007002 1.2e-126 458.0 466 54.1
Sabra15G0021700 Salix brachista HOM05D005766 ORTHO05D007002 9.9e-124 448.4 546 51.5
SMO203G0206 Selaginella moellendorffii HOM05D005766 ORTHO05D007002 3.5e-121 439.9 665 38.9
unitig_37.g11976 Utricularia gibba HOM05D005766 ORTHO05D007002 7.8e-121 438.7 669 39.9
Glyma.09G181880 Glycine max HOM05D005766 ORTHO05D007002 3.1e-109 400.2 244 77.9
Nitab4.5_0014657g0010 Nicotiana tabacum HOM05D005766 ORTHO05D007002 1.5e-92 344.7 257 67.7
TWI39G0059 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 3.9e-72 276.9 168 76.2
QL09p011984 Quercus lobata HOM05D005766 ORTHO05D007002 6.3e-70 269.6 216 66.7
CBR_g23333 Chara braunii HOM05D005766 ORTHO05D007002 7.0e-69 266.2 369 42.3
Atru.chr1.316 Acer truncatum HOM05D005766 ORTHO05D007002 1.7e-67 261.5 169 72.8
QL11p056568 Quercus lobata HOM05D005766 ORTHO05D007002 4.7e-65 253.4 169 68.6
RcHm_v2.0_Chr1g0379651 Rosa chinensis HOM05D005766 ORTHO05D007002 1.4e-64 251.9 169 67.5
Actinidia08607 Actinidia chinensis HOM05D005766 ORTHO05D007002 3.0e-64 250.8 152 80.9
Zm00001eb221900 Zea mays HOM05D005766 ORTHO05D007002 3.9e-64 250.4 350 46.0
Nitab4.5_0000157g0190 Nicotiana tabacum HOM05D005766 ORTHO05D007002 2.6e-63 247.7 294 50.3
Sc13g0009390 Simmondsia chinensis HOM05D005766 ORTHO05D007002 6.5e-59 233.0 169 66.3
Psat6g194960 Pisum sativum HOM05D000038 ORTHO05D007763 7.2e-58 229.6 170 63.5
HanXRQChr14g0440221 Helianthus annuus HOM05D005766 ORTHO05D007002 6.1e-57 226.5 169 63.3
Lalb_Chr06g0161401 Lupinus albus HOM05D005766 ORTHO05D007002 1.8e-56 224.9 169 58.6
Solyc12g021310.3 Solanum lycopersicum HOM05D005766 ORTHO05D007002 1.2e-55 222.2 169 62.7
Glyma.12G172150 Glycine max HOM05D005766 ORTHO05D007002 3.4e-55 220.7 131 79.4
PGSC0003DMG400006615 Solanum tuberosum HOM05D005766 ORTHO05D007002 3.4e-55 220.7 169 62.1
Sopen12g011330 Solanum pennellii HOM05D005766 ORTHO05D007002 2.8e-54 217.6 169 60.9
Nitab4.5_0001504g0110 Nicotiana tabacum HOM05D005766 ORTHO05D007002 1.4e-53 215.3 174 60.9
DCAR_008901 Daucus carota HOM05D000149 ORTHO05D000076 1.6e-52 211.8 617 28.4
Medtr1g099390 Medicago truncatula HOM05D005766 ORTHO05D007002 2.9e-51 207.6 171 57.9
Glyma.16G148650 Glycine max HOM05D005766 ORTHO05D007002 2.3e-48 198.0 102 86.3
Glyma.10G228301 Glycine max HOM05D005766 ORTHO05D007002 2.0e-47 194.9 100 87.0
Glyma.03G072901 Glycine max HOM05D005766 ORTHO05D007002 1.7e-43 181.8 115 73.9
AUR62021076 Chenopodium quinoa HOM05D005766 ORTHO05D007002 2.3e-43 181.4 133 66.9
AUR62031455 Chenopodium quinoa HOM05D000038 ORTHO05D007763 2.3e-43 181.4 166 58.4
Glyma.18G131400 Glycine max HOM05D005766 ORTHO05D007002 2.5e-42 177.9 169 52.7
QL09p011987 Quercus lobata HOM05D005766 ORTHO05D007002 1.2e-41 175.6 169 53.3
Actinidia08606 Actinidia chinensis HOM05D005766 ORTHO05D007002 1.8e-40 171.8 200 47.5
Os05g0299300 Oryza sativa ssp. japonica HOM05D005766 ORTHO05D007002 2.3e-40 171.4 130 60.8
PRCOL_00006853 Prasinoderma coloniale HOM05D005766 ORTHO05D007002 6.8e-40 169.9 869 23.0
CAN.G71.5 Capsicum annuum HOM05D005766 ORTHO05D007002 4.9e-38 163.7 130 60.8
QL09p011981 Quercus lobata HOM05D005766 ORTHO05D007002 2.0e-36 158.3 100 71.0
Nitab4.5_0000327g0060 Nicotiana tabacum HOM05D005766 ORTHO05D007002 2.5e-34 151.4 90 78.9
Duzib084G0599 Durio zibethinus HOM05D005766 ORTHO05D007002 7.3e-34 149.8 114 70.2
arahy.Tifrunner.gnm1.ann1.DV56VC Arachis hypogaea HOM05D005766 ORTHO05D007002 1.6e-28 132.1 137 44.5
Cre01.g002700 Chlamydomonas reinhardtii HOM05D005766 ORTHO05D007002 4.3e-26 124.0 191 35.1
Actinidia08608 Actinidia chinensis HOM05D005766 ORTHO05D007002 6.4e-22 110.2 70 71.4
CSS0010184 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 5.4e-21 107.1 78 65.4
arahy.Tifrunner.gnm1.ann1.XWQU4Z Arachis hypogaea HOM05D005766 ORTHO05D007002 1.3e-19 102.4 82 56.1
Cfa000854 Carpinus fangiana HOM05D005766 ORTHO05D007002 3.9e-19 100.9 76 61.8
CSS0002634 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 5.1e-19 100.5 65 70.8
COL.COLO4_30253 Corchorus olitorius HOM05D005766 ORTHO05D007002 4.4e-15 87.4 210 35.7
arahy.Tifrunner.gnm1.ann1.118EZC Arachis hypogaea HOM05D005766 ORTHO05D007002 8.4e-14 83.2 56 62.5
TPR.G27363 Trifolium pratense HOM05D005766 ORTHO05D007002 4.6e-12 77.4 58 58.6
Peaxi162Scf00603g00414 Petunia axillaris HOM05D007579 ORTHO05D000285 3.0e-11 74.7 60 61.7
FAN08G0156 Fragaria x ananassa HOM05D002332 ORTHO05D002509 3.6e-09 67.8 248 26.6
arahy.Tifrunner.gnm1.ann1.AW6XP7 Arachis hypogaea HOM05D005766 ORTHO05D007002 8.1e-09 66.6 50 56.0
CsaV3_1G009550 Cucumis sativus L. HOM05D002332 ORTHO05D002509 1.1e-08 66.2 251 24.7
TWI39G1032 Tripterygium wilfordii HOM05D002332 ORTHO05D002509 1.4e-08 65.9 256 23.8
Ca_12501_v3 Cicer arietinum L. HOM05D002332 ORTHO05D002509 3.1e-08 64.7 256 22.3
Ca_25727_v3 Cicer arietinum L. HOM05D002332 ORTHO05D002509 3.1e-08 64.7 256 22.3
Prupe.5G153000 Prunus persica HOM05D002332 ORTHO05D002509 4.0e-08 64.3 255 23.1
RcHm_v2.0_Chr7g0190461 Rosa chinensis HOM05D002332 ORTHO05D002509 4.0e-08 64.3 252 25.4
ECA233G2827 Erigeron canadensis HOM05D000836 ORTHO05D000709 5.2e-08 63.9 230 26.5
Lj1g0002370 Lotus japonicus HOM05D006183 ORTHO05D007844 8.9e-08 63.2 356 23.0
FvH4_5g07940 Fragaria vesca HOM05D002332 ORTHO05D002509 1.2e-07 62.8 255 23.5
FAN18G1292 Fragaria x ananassa HOM05D002332 ORTHO05D002509 1.2e-07 62.8 255 23.5
Glyma.08G028700 Glycine max HOM05D005766 ORTHO05D007002 1.5e-07 62.4 41 68.3
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 1.5e-07 62.4 318 21.1
Haze_07236 Corylus avellana HOM05D002332 ORTHO05D002509 2.0e-07 62.0 255 25.9
Glyma.18G275100 Glycine max HOM05D002332 ORTHO05D002509 2.0e-07 62.0 258 24.0
Thecc.03G126600 Theobroma cacao HOM05D002332 ORTHO05D002509 2.6e-07 61.6 247 23.5
GSVIVG01035793001 Vitis vinifera HOM05D000836 ORTHO05D000709 3.4e-07 61.2 237 23.2
Dinv19261 Davidia involucrata HOM05D006183 ORTHO05D007844 4.4e-07 60.8 279 24.0
Oeu049881.1 Olea europaea HOM05D005766 ORTHO05D007002 4.4e-07 60.8 56 53.6
QL10p004201 Quercus lobata HOM05D002332 ORTHO05D002509 4.4e-07 60.8 255 25.9
Duzib133G1169 Durio zibethinus HOM05D006183 ORTHO05D007844 5.8e-07 60.5 268 24.3
Medtr1g034785 Medicago truncatula HOM05D002332 ORTHO05D002509 5.8e-07 60.5 260 23.5
TAR629G2976 Trochodendron aralioides HOM05D002332 ORTHO05D002509 5.8e-07 60.5 248 23.0
Gohir.D08G042200 Gossypium hirsutum HOM05D005813 ORTHO05D007310 7.6e-07 60.1 398 20.1
Thecc.01G376600 Theobroma cacao HOM05D005813 ORTHO05D007310 9.9e-07 59.7 376 20.2
Cfa018082 Carpinus fangiana HOM05D002332 ORTHO05D002509 1.3e-06 59.3 259 20.1
Cfa018843 Carpinus fangiana HOM05D002332 ORTHO05D002509 1.3e-06 59.3 255 25.5
Cc01_g17710 Coffea canephora HOM05D006183 ORTHO05D007844 1.3e-06 59.3 345 20.9
Glyma.08G354500 Glycine max HOM05D000836 ORTHO05D000709 1.3e-06 59.3 270 21.9
Lj1g0004747 Lotus japonicus HOM05D002332 ORTHO05D002509 1.3e-06 59.3 260 23.5
CDE02G0751 Ceratophyllum demersum HOM05D006183 ORTHO05D007844 1.7e-06 58.9 263 24.0
Gohir.A07G203800 Gossypium hirsutum HOM05D006183 ORTHO05D007844 1.7e-06 58.9 257 23.7
MD06G1143900 Malus domestica HOM05D002332 ORTHO05D002509 1.7e-06 58.9 267 21.7
Medtr7g016970 Medicago truncatula HOM05D002332 ORTHO05D002509 1.7e-06 58.9 256 22.3
Duzib138G0196 Durio zibethinus HOM05D005813 ORTHO05D007310 2.2e-06 58.5 349 21.8
Haze_18030 Corylus avellana HOM05D002332 ORTHO05D002509 2.9e-06 58.2 259 20.1
Gohir.D07G209800 Gossypium hirsutum HOM05D006183 ORTHO05D007844 2.9e-06 58.2 259 23.2
Oeu023563.1 Olea europaea HOM05D005766 ORTHO05D007002 3.8e-06 57.8 88 37.5
Oeu044897.1 Olea europaea HOM05D005766 ORTHO05D007002 3.8e-06 57.8 88 37.5
PSO675G6139 Papaver somniferum HOM05D004669 ORTHO05D005767 3.8e-06 57.8 192 28.1
DCAR_018527 Daucus carota HOM05D006183 ORTHO05D007844 4.9e-06 57.4 236 24.6
FAN24G1350 Fragaria x ananassa HOM05D000836 ORTHO05D000709 4.9e-06 57.4 223 22.9
Gorai.001G237200 Gossypium raimondii HOM05D006183 ORTHO05D007844 4.9e-06 57.4 257 23.3
Oeu016993.1 Olea europaea HOM05D005766 ORTHO05D007002 4.9e-06 57.4 88 37.5
RcHm_v2.0_Chr6g0308111 Rosa chinensis HOM05D002332 ORTHO05D002509 4.9e-06 57.4 182 24.2
Sopen12g023530 Solanum pennellii HOM05D002634 ORTHO05D003100 6.4e-06 57.0 235 22.6
Duzib133G0639 Durio zibethinus HOM05D005813 ORTHO05D007310 8.4e-06 56.6 354 22.3
ECA038G0001 Erigeron canadensis HOM05D004669 ORTHO05D005767 8.4e-06 56.6 192 28.6
Gohir.A08G031100 Gossypium hirsutum HOM05D005813 ORTHO05D007310 8.4e-06 56.6 398 20.4
Psat2g169320 Pisum sativum HOM05D002634 ORTHO05D003100 8.4e-06 56.6 238 24.8


User provided reference genes

Program Settings