Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1131G020 Amborella trichopoda HOM05D006306 ORTHO05D007912 6.8e-176 620.5 313 100.0
MBI06_g33547_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 8.3e-89 331.3 301 55.5
TAR636G3656 Trochodendron aralioides HOM05D006306 ORTHO05D007912 2.2e-81 306.6 310 51.6
GSVIVG01028794001 Vitis vinifera HOM05D006306 ORTHO05D007912 6.2e-76 288.5 297 52.9
CiPaw.06G005500 Carya illinoinensis HOM05D006306 ORTHO05D007912 3.4e-74 282.7 311 48.2
Cfa016324 Carpinus fangiana HOM05D006306 ORTHO05D007912 4.9e-73 278.9 310 48.1
Aqoxy5G04066 Aquilegia oxysepala HOM05D006306 ORTHO05D007912 1.3e-70 270.8 280 51.4
Prupe.2G303600 Prunus persica HOM05D006306 ORTHO05D007912 1.7e-70 270.4 274 51.1
Ciclev10005526m.g Citrus clementina HOM05D006306 ORTHO05D007912 3.9e-70 269.2 300 50.3
Atru.chr1.326 Acer truncatum HOM05D006306 ORTHO05D007912 6.6e-70 268.5 300 48.0
PSO170G4684 Papaver somniferum HOM05D006306 ORTHO05D007912 1.9e-69 266.9 300 48.7
CANSAT21G1468 Cannabis sativa HOM05D006306 ORTHO05D007912 3.3e-69 266.2 302 47.7
TWI39G0038 Tripterygium wilfordii HOM05D006306 ORTHO05D007912 3.3e-69 266.2 302 49.7
Ca_10706_v3 Cicer arietinum L. HOM05D006306 ORTHO05D007912 1.2e-68 264.2 303 49.2
PGR142G3937 Punica granatum HOM05D006306 ORTHO05D007912 1.2e-68 264.2 297 45.8
Hma1.2p1_0142F.1_g064400 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 2.1e-68 263.5 305 50.8
MD01G1211200 Malus domestica HOM05D006306 ORTHO05D007912 6.2e-68 261.9 298 49.7
PSO063G5557 Papaver somniferum HOM05D006306 ORTHO05D007912 1.4e-67 260.8 300 48.3
Psat6g195200 Pisum sativum HOM05D006306 ORTHO05D007912 5.2e-67 258.8 303 47.9
CDE08G0346 Ceratophyllum demersum HOM05D006306 ORTHO05D007912 6.8e-67 258.5 274 51.1
Hund11704 Selenicereus undatus HOM05D006306 ORTHO05D007912 1.2e-66 257.7 267 48.3
CSS0007539 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 1.5e-66 257.3 297 47.5
Eucgr.K00302 Eucalyptus grandis HOM05D006306 ORTHO05D007912 3.4e-66 256.1 298 46.3
Cpa.g.sc3.9 Carica papaya HOM05D006306 ORTHO05D007912 4.4e-66 255.8 312 46.8
COL.COLO4_30262 Corchorus olitorius HOM05D006306 ORTHO05D007912 2.2e-65 253.4 301 46.5
QL09p012095 Quercus lobata HOM05D006306 ORTHO05D007912 4.9e-65 252.3 297 47.5
RcHm_v2.0_Chr1g0379511 Rosa chinensis HOM05D006306 ORTHO05D007912 6.4e-65 251.9 309 49.2
FAN10G3235 Fragaria x ananassa HOM05D006306 ORTHO05D007912 8.3e-65 251.5 312 49.4
VMungo0720G2617 Vigna mungo HOM05D006306 ORTHO05D007912 8.3e-65 251.5 296 46.3
AUR62021081 Chenopodium quinoa HOM05D006306 ORTHO05D007912 1.4e-64 250.8 266 48.5
FvH4_7g30600 Fragaria vesca HOM05D006306 ORTHO05D007912 2.4e-64 250.0 312 49.7
FAN06G4689 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.4e-64 250.0 312 49.7
Phvul.007G076000 Phaseolus vulgaris HOM05D006306 ORTHO05D007912 3.2e-64 249.6 297 49.2
FAN06G4805 Fragaria x ananassa HOM05D006306 ORTHO05D007912 5.4e-64 248.8 312 49.7
Glyma.10G229500 Glycine max HOM05D006306 ORTHO05D007912 5.4e-64 248.8 298 48.3
Gorai.008G272800 Gossypium raimondii HOM05D006306 ORTHO05D007912 1.2e-63 247.7 310 46.5
MBI17_g41518_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 1.6e-63 247.3 301 46.5
FAN01G1106 Fragaria x ananassa HOM05D006306 ORTHO05D007912 3.5e-63 246.1 312 49.0
arahy.Tifrunner.gnm1.ann1.U1BTLB Arachis hypogaea HOM05D006306 ORTHO05D007912 1.0e-62 244.6 279 47.7
Sc19g0001030 Simmondsia chinensis HOM05D006306 ORTHO05D007912 1.0e-62 244.6 299 47.5
Duzib084G0050 Durio zibethinus HOM05D006306 ORTHO05D007912 3.0e-62 243.0 306 46.1
RhsimUnG0097700 Rhododendron simsii HOM05D006306 ORTHO05D007912 6.6e-62 241.9 303 44.6
arahy.Tifrunner.gnm1.ann1.FS5X82 Arachis hypogaea HOM05D006306 ORTHO05D007912 1.9e-61 240.4 279 47.3
FAN10G1990 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.5e-61 240.0 344 45.3
Lj1A1009G47 Lonicera japonica HOM05D006306 ORTHO05D007912 5.6e-61 238.8 309 45.6
Rhsim03G0195700 Rhododendron simsii HOM05D006306 ORTHO05D007912 1.6e-60 237.3 304 44.4
Cc02_g02170 Coffea canephora HOM05D006306 ORTHO05D007912 6.8e-59 231.9 296 45.9
Haze_00077 Corylus avellana HOM05D000147 ORTHO05D002016 2.6e-58 229.9 310 43.9
ClCG01G000830 Citrullus lanatus HOM05D006306 ORTHO05D007912 4.4e-58 229.2 297 42.1
MSTRG.27066 Avicennia marina HOM05D006306 ORTHO05D007912 1.3e-57 227.6 306 42.2
Gohir.A12G254499 Gossypium hirsutum HOM05D006306 ORTHO05D007912 4.9e-57 225.7 307 44.3
Peaxi162Scf00057g00026 Petunia axillaris HOM05D006306 ORTHO05D007912 8.4e-57 224.9 306 44.8
Lalb_Chr02g0141321 Lupinus albus HOM05D006306 ORTHO05D007912 1.1e-56 224.6 263 45.6
Medtr1g099490 Medicago truncatula HOM05D006306 ORTHO05D007912 1.4e-56 224.2 240 48.3
Lsat_1_v5_gn_8_6341 Lactuca sativa HOM05D006306 ORTHO05D007912 2.4e-56 223.4 303 40.9
Lj5g0016065 Lotus japonicus HOM05D006306 ORTHO05D007912 2.4e-56 223.4 305 45.6
HPP92_009775 Vanilla planifolia HOM05D006306 ORTHO05D007912 5.4e-56 222.2 276 43.5
Migut.F00264 Erythranthe guttata HOM05D006306 ORTHO05D007912 7.1e-56 221.9 298 42.3
Nitab4.5_0001748g0060 Nicotiana tabacum HOM05D006306 ORTHO05D007912 1.6e-55 220.7 304 43.8
Sed0005488 Sechium edule HOM05D006306 ORTHO05D007912 1.6e-55 220.7 299 42.5
CsaV3_5G000970 Cucumis sativus L. HOM05D006306 ORTHO05D007912 2.1e-55 220.3 298 42.3
Sopen03g003670 Solanum pennellii HOM05D006306 ORTHO05D007912 6.0e-55 218.8 304 43.4
Potri.012G035500 Populus trichocarpa HOM05D006306 ORTHO05D007912 7.8e-55 218.4 300 43.3
Nitab4.5_0008026g0020 Nicotiana tabacum HOM05D006306 ORTHO05D007912 1.0e-54 218.0 304 44.7
PGSC0003DMG400019962 Solanum tuberosum HOM05D006306 ORTHO05D007912 1.0e-54 218.0 303 43.6
Solyc03g007750.3 Solanum lycopersicum HOM05D006306 ORTHO05D007912 3.9e-54 216.1 304 43.4
THA.LOC104825120 Tarenaya hassleriana HOM05D006306 ORTHO05D007912 4.3e-53 212.6 299 41.8
HanXRQChr05g0141161 Helianthus annuus HOM05D006306 ORTHO05D007912 9.6e-53 211.5 306 40.8
Sabra12G0024000 Salix brachista HOM05D006306 ORTHO05D007912 1.2e-52 211.1 297 42.1
CAN.G926.4 Capsicum annuum HOM05D006306 ORTHO05D007912 8.1e-52 208.4 306 40.5
SGA_v2.0_scaffold192G40609 Striga asiatica HOM05D006306 ORTHO05D007912 2.0e-50 203.8 305 41.0
Carub.0008s1304 Capsella rubella HOM05D006306 ORTHO05D007912 7.6e-50 201.8 301 39.2
SalBow4G0206 Salvia bowleyana HOM05D006306 ORTHO05D007912 1.3e-49 201.1 279 40.1
Zm00001eb293490 Zea mays HOM05D006306 ORTHO05D007912 2.4e-48 196.8 207 50.2
Manes.06G154300 Manihot esculenta HOM05D006306 ORTHO05D007912 5.4e-48 195.7 218 50.5
AL8G27340 Arabidopsis lyrata HOM05D006306 ORTHO05D007912 7.1e-48 195.3 275 41.5
AT5G52880 Arabidopsis thaliana HOM05D006306 ORTHO05D007912 1.6e-47 194.1 275 41.1
Gohir.D12G255200 Gossypium hirsutum HOM05D006306 ORTHO05D007912 7.8e-47 191.8 207 50.7
Thecc.03G188100 Theobroma cacao HOM05D006306 ORTHO05D007912 7.8e-47 191.8 201 52.2
AUR62031450 Chenopodium quinoa HOM05D006306 ORTHO05D007912 1.3e-44 184.5 211 45.5
unitig_92.g28262 Utricularia gibba HOM05D006306 ORTHO05D001071 1.3e-44 184.5 301 37.2
BcaC04g20532 Brassica carinata HOM05D006306 ORTHO05D007912 3.6e-44 183.0 301 37.2
Hma1.2p1_0142F.1_g064410 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 6.2e-44 182.2 209 48.8
RcHm_v2.0_Chr1g0379281 Rosa chinensis HOM05D006306 ORTHO05D007912 6.2e-44 182.2 143 61.5
TPR.G7772 Trifolium pratense HOM05D006306 ORTHO05D007912 6.2e-44 182.2 227 46.7
BolC9t57127H Brassica oleracea HOM05D006306 ORTHO05D007912 8.1e-44 181.8 301 37.2
BcaB08g35641 Brassica carinata HOM05D006306 ORTHO05D007912 1.4e-43 181.0 300 37.7
AagrBONN_evm.TU.Sc2ySwM_228.2460 Anthoceros agrestis HOM05D006306 ORTHO05D007912 1.8e-43 180.6 279 37.3
Nn1g01725 Nelumbo nucifera HOM05D006306 ORTHO05D007912 2.4e-43 180.3 302 37.1
vmacro06599 Vaccinium macrocarpon HOM05D006306 ORTHO05D007912 6.9e-43 178.7 249 43.4
Aa31LG3G9130 Aethionema arabicum HOM05D006306 ORTHO05D007912 1.6e-39 167.5 264 39.4
ECA233G3199 Erigeron canadensis HOM05D006306 ORTHO05D007912 7.4e-37 158.7 251 39.0
DCAR_020289 Daucus carota HOM05D006306 ORTHO05D007912 2.1e-36 157.1 200 46.5
Pp3c4_17520 Physcomitrium patens HOM05D006306 ORTHO05D007912 1.2e-34 151.4 266 36.1
AagrBONN_evm.TU.Sc2ySwM_117.3502 Anthoceros agrestis HOM05D006306 ORTHO05D007912 4.5e-34 149.4 269 36.8
Os05g0526300 Oryza sativa ssp. japonica HOM05D006306 ORTHO05D007912 1.3e-33 147.9 137 56.9
Thhalv10014697m.g Eutrema salsugineum HOM05D006306 ORTHO05D007912 1.1e-32 144.8 217 38.7
BcaC04g20531 Brassica carinata HOM05D006306 ORTHO05D007912 2.3e-30 137.1 233 35.6
CARHR265820 Cardamine hirsuta HOM05D006306 ORTHO05D007912 3.0e-30 136.7 274 33.2
Pp3c3_15840 Physcomitrium patens HOM05D006306 ORTHO05D007912 1.1e-29 134.8 289 33.2
RcHm_v2.0_Chr1g0379501 Rosa chinensis HOM05D006306 ORTHO05D007912 1.1e-29 134.8 233 39.9
MBI12_g17737_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 4.3e-29 132.9 106 64.2
Sp6g15040 Schrenkiella parvula HOM05D006306 ORTHO05D007912 4.3e-29 132.9 306 30.7
C09p42490 Brassica napus HOM05D006306 ORTHO05D007912 9.6e-29 131.7 244 34.8
BcaB08g35646 Brassica carinata HOM05D006306 ORTHO05D007912 2.1e-28 130.6 302 31.8
BolC9t57131H Brassica oleracea HOM05D006306 ORTHO05D007912 3.1e-27 126.7 158 43.0
MELO3C034012.2 Cucumis melo HOM05D006306 ORTHO05D007912 6.9e-27 125.6 215 37.2
RcHm_v2.0_Chr1g0378761 Rosa chinensis HOM05D006306 ORTHO05D007912 8.4e-25 118.6 243 34.2
CBR_g45678 Chara braunii HOM05D006306 ORTHO05D007912 2.5e-24 117.1 259 31.7
Ah.13g069400 Amaranthus hybridus HOM05D006306 ORTHO05D007912 7.1e-24 115.5 108 56.5
Aa31LG3G9120 Aethionema arabicum HOM05D006306 ORTHO05D007912 2.7e-23 113.6 174 39.1
TPR.G10934 Trifolium pratense HOM05D006306 ORTHO05D007912 3.9e-22 109.8 89 60.7
Ah.13g069420 Amaranthus hybridus HOM05D006306 ORTHO05D007912 9.7e-21 105.1 121 51.2
CAN.G926.5 Capsicum annuum HOM05D006306 ORTHO05D007912 4.1e-19 99.8 154 38.3
Dinv28363 Davidia involucrata HOM05D000147 ORTHO05D002016 6.9e-19 99.0 77 63.6
A10p10330 Brassica napus HOM05D006306 ORTHO05D007912 3.4e-18 96.7 108 48.1
ClCG04G002190 Citrullus lanatus HOM05D006306 ORTHO05D007912 7.7e-18 95.5 80 62.5
ClCG04G002620 Citrullus lanatus HOM05D006306 ORTHO05D007912 7.7e-18 95.5 80 62.5
COL.COLO4_02740 Corchorus olitorius HOM05D006306 ORTHO05D007912 7.9e-15 85.5 57 70.2
C09p42540 Brassica napus HOM05D006306 ORTHO05D007912 1.8e-14 84.3 102 42.2
Prupe.2G304000 Prunus persica HOM05D006306 ORTHO05D007912 4.3e-13 79.7 62 64.5
RcHm_v2.0_Chr1g0379101 Rosa chinensis HOM05D006306 ORTHO05D007912 9.7e-13 78.6 48 68.8
Prupe.2G291600 Prunus persica HOM05D006306 ORTHO05D007912 1.7e-12 77.8 58 65.5
SMO325G0002 Selaginella moellendorffii HOM05D006584 ORTHO05D007640 6.3e-12 75.9 195 28.7
Glyma.20G163801 Glycine max HOM05D006306 ORTHO05D007912 8.2e-12 75.5 136 35.3
CSS0044760 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 4.5e-10 69.7 57 57.9
CSS0035371 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 2.1e-07 60.8 111 28.8


User provided reference genes

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