Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1128G058 Amborella trichopoda HOM05D004734 ORTHO05D006019 0.0e+00 1665.6 859 100.0
TAR629G0221 Trochodendron aralioides HOM05D004734 ORTHO05D006019 1.1e-212 744.2 745 55.7
Dinv08709 Davidia involucrata HOM05D004734 ORTHO05D006019 2.5e-212 743.0 744 55.1
Hma1.2p1_2840F.1_g329320 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 4.9e-208 728.8 737 55.0
Cfa014305 Carpinus fangiana HOM05D004734 ORTHO05D006019 2.1e-206 723.4 745 54.4
CSS0018671 Camellia sinensis var. sinensis HOM05D004734 ORTHO05D006019 3.5e-206 722.6 744 53.9
Nn1g07321 Nelumbo nucifera HOM05D004734 ORTHO05D006019 4.3e-204 715.7 746 53.4
Actinidia09755 Actinidia chinensis HOM05D004734 ORTHO05D006019 5.6e-204 715.3 744 53.2
Atru.chr6.3288 Acer truncatum HOM05D004734 ORTHO05D006019 2.1e-203 713.4 743 52.9
CiPaw.04G108800 Carya illinoinensis HOM05D004734 ORTHO05D006019 2.0e-201 706.8 745 52.3
Ciclev10014379m.g Citrus clementina HOM05D004734 ORTHO05D006019 1.3e-200 704.1 746 52.3
Haze_12752 Corylus avellana HOM05D004734 ORTHO05D006019 1.7e-200 703.7 720 54.2
Cc00_g21460 Coffea canephora HOM05D004734 ORTHO05D006019 1.1e-199 701.0 746 52.7
Glyma.02G266800 Glycine max HOM05D004734 ORTHO05D006019 5.4e-199 698.7 738 52.7
Gohir.D07G174400 Gossypium hirsutum HOM05D004734 ORTHO05D006019 1.6e-198 697.2 747 51.4
Potri.002G223600 Populus trichocarpa HOM05D004734 ORTHO05D006019 6.6e-197 691.8 747 51.9
Duzib138G1622 Durio zibethinus HOM05D004734 ORTHO05D006019 1.1e-196 691.0 764 51.3
Glyma.14G050700 Glycine max HOM05D004734 ORTHO05D006019 1.3e-195 687.6 738 52.0
PSO017G2150 Papaver somniferum HOM05D004734 ORTHO05D006019 2.1e-195 686.8 744 52.2
GSVIVG01030526001 Vitis vinifera HOM05D004734 ORTHO05D006019 2.1e-195 686.8 739 52.1
Solyc05g043350.4 Solanum lycopersicum HOM05D004734 ORTHO05D006019 6.2e-195 685.3 740 50.9
Aqoxy2G03788 Aquilegia oxysepala HOM05D004734 ORTHO05D006019 8.1e-195 684.9 751 52.1
TWI75G1245 Tripterygium wilfordii HOM05D004734 ORTHO05D006019 8.1e-195 684.9 744 51.1
QL01p037797 Quercus lobata HOM05D004734 ORTHO05D006019 2.4e-194 683.3 719 52.3
Nitab4.5_0000006g0360 Nicotiana tabacum HOM05D004734 ORTHO05D006019 2.6e-193 679.9 755 51.5
Sc21g0001080 Simmondsia chinensis HOM05D004734 ORTHO05D006019 2.6e-193 679.9 740 50.8
Nitab4.5_0009060g0010 Nicotiana tabacum HOM05D004734 ORTHO05D006019 3.4e-193 679.5 747 51.8
Prupe.3G208500 Prunus persica HOM05D004734 ORTHO05D006019 7.6e-193 678.3 740 50.8
Atru.chr6.3273 Acer truncatum HOM05D004734 ORTHO05D006019 1.7e-192 677.2 750 50.5
CANSAT64G0097 Cannabis sativa HOM05D004734 ORTHO05D006019 2.2e-192 676.8 739 51.0
CAN.G387.3 Capsicum annuum HOM05D004734 ORTHO05D006019 2.9e-192 676.4 742 50.7
MD09G1116200 Malus domestica HOM05D004734 ORTHO05D006019 3.8e-192 676.0 740 50.7
vmacro12148 Vaccinium macrocarpon HOM05D004734 ORTHO05D006019 3.8e-192 676.0 788 49.6
FAN14G4409 Fragaria x ananassa HOM05D004734 ORTHO05D006019 4.9e-192 675.6 742 50.9
HanXRQChr16g0508221 Helianthus annuus HOM05D004734 ORTHO05D006019 6.4e-192 675.2 739 51.6
Lsat_1_v5_gn_7_94920 Lactuca sativa HOM05D004734 ORTHO05D006019 8.4e-192 674.9 743 51.1
RcHm_v2.0_Chr2g0157781 Rosa chinensis HOM05D004734 ORTHO05D006019 7.1e-191 671.8 741 50.2
Phvul.008G215200 Phaseolus vulgaris HOM05D004734 ORTHO05D006019 2.7e-190 669.8 739 51.0
FAN09G1456 Fragaria x ananassa HOM05D004734 ORTHO05D006019 4.6e-190 669.1 759 49.7
Manes.12G058300 Manihot esculenta HOM05D004734 ORTHO05D006019 1.7e-189 667.2 744 50.1
FAN02G4553 Fragaria x ananassa HOM05D004734 ORTHO05D006019 5.1e-189 665.6 741 50.2
THA.LOC104826129 Tarenaya hassleriana HOM05D004734 ORTHO05D006019 1.5e-188 664.1 747 50.2
DCAR_012916 Daucus carota HOM05D004734 ORTHO05D006019 1.9e-188 663.7 745 49.1
MD17G1107900 Malus domestica HOM05D004734 ORTHO05D006019 4.3e-188 662.5 740 49.6
Oeu054514.1 Olea europaea HOM05D004734 ORTHO05D006019 7.3e-188 661.8 739 50.7
Gorai.001G195000 Gossypium raimondii HOM05D004734 ORTHO05D006019 9.6e-188 661.4 747 49.7
Lalb_Chr10g0105531 Lupinus albus HOM05D004734 ORTHO05D006019 2.8e-187 659.8 738 50.3
HanXRQChr14g0438421 Helianthus annuus HOM05D004734 ORTHO05D006019 6.2e-187 658.7 735 50.5
SalBow7G0507 Salvia bowleyana HOM05D004734 ORTHO05D006019 6.2e-187 658.7 740 48.8
FAN05G4875 Fragaria x ananassa HOM05D004734 ORTHO05D006019 1.4e-186 657.5 754 49.6
Migut.A01159 Erythranthe guttata HOM05D004734 ORTHO05D006019 4.0e-186 656.0 741 49.3
VMungo0647G1710 Vigna mungo HOM05D004734 ORTHO05D006019 2.0e-185 653.7 739 49.8
Sed0026816 Sechium edule HOM05D004734 ORTHO05D006019 4.2e-183 646.0 747 48.3
ClCG02G018160 Citrullus lanatus HOM05D004734 ORTHO05D006019 1.2e-182 644.4 748 48.4
MELO3C019721.2 Cucumis melo HOM05D004734 ORTHO05D006019 1.6e-182 644.0 759 48.0
arahy.Tifrunner.gnm1.ann1.L0FFGY Arachis hypogaea HOM05D004734 ORTHO05D006019 2.7e-182 643.3 742 50.0
PGR042G3679 Punica granatum HOM05D004734 ORTHO05D006019 1.0e-181 641.3 745 49.0
Thhalv10016293m.g Eutrema salsugineum HOM05D004734 ORTHO05D006019 2.3e-181 640.2 747 49.4
AL4G28410 Arabidopsis lyrata HOM05D004734 ORTHO05D006019 5.1e-181 639.0 747 49.4
SGA_v2.0_scaffold73G24401 Striga asiatica HOM05D004734 ORTHO05D006019 6.7e-181 638.6 763 46.9
AT2G32900 Arabidopsis thaliana HOM05D004734 ORTHO05D006019 4.3e-180 636.0 733 49.0
Carub.0004s1431 Capsella rubella HOM05D004734 ORTHO05D006019 1.6e-179 634.0 745 49.3
CARHR126840 Cardamine hirsuta HOM05D004734 ORTHO05D006019 6.2e-179 632.1 747 48.3
Eucgr.A01088 Eucalyptus grandis HOM05D004734 ORTHO05D006019 1.1e-178 631.3 746 48.4
TPR.G25656 Trifolium pratense HOM05D004734 ORTHO05D006019 1.2e-177 627.9 648 52.6
arahy.Tifrunner.gnm1.ann1.LYY30L Arachis hypogaea HOM05D004734 ORTHO05D006019 1.7e-176 624.0 759 48.9
CDE07G0136 Ceratophyllum demersum HOM05D004734 ORTHO05D006019 2.2e-176 623.6 737 49.3
BcaC01g05869 Brassica carinata HOM05D004734 ORTHO05D006019 2.9e-176 623.2 747 48.6
Sp4g15270 Schrenkiella parvula HOM05D004734 ORTHO05D006019 1.1e-175 621.3 747 48.6
Aa31LG5G4570 Aethionema arabicum HOM05D004734 ORTHO05D006019 2.5e-175 620.2 741 48.4
EL10Ac9g22816 Beta vulgaris HOM05D004734 ORTHO05D006019 3.2e-175 619.8 783 45.5
BcaB01g03944 Brassica carinata HOM05D004734 ORTHO05D006019 7.1e-175 618.6 747 48.5
HPP92_000196 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.6e-174 617.5 729 47.1
BolC3t14542H Brassica oleracea HOM05D004734 ORTHO05D006019 5.1e-173 612.5 770 47.1
BraA03t11112Z Brassica rapa HOM05D004734 ORTHO05D006019 5.1e-173 612.5 763 47.3
BcaB02g10504 Brassica carinata HOM05D004734 ORTHO05D006019 1.9e-172 610.5 744 48.1
PSO675G0915 Papaver somniferum HOM05D004734 ORTHO05D006019 1.9e-172 610.5 635 52.8
Lj8A131T30 Lonicera japonica HOM05D004734 ORTHO05D006019 9.6e-172 608.2 738 49.2
Thecc.01G184100 Theobroma cacao HOM05D004734 ORTHO05D006019 4.8e-171 605.9 548 57.5
MBI16_g26176_MAGBIO Magnolia biondii HOM05D004734 ORTHO05D006019 6.2e-171 605.5 751 49.3
Ah.01g001840 Amaranthus hybridus HOM05D004734 ORTHO05D006019 1.7e-168 597.4 742 45.8
BraA05t20212Z Brassica rapa HOM05D004734 ORTHO05D006019 1.4e-167 594.3 763 46.4
A05p12730 Brassica napus HOM05D004734 ORTHO05D006019 1.9e-167 594.0 754 46.7
Medtr5g084830 Medicago truncatula HOM05D004734 ORTHO05D006019 2.1e-166 590.5 535 57.9
Gohir.A07G168100 Gossypium hirsutum HOM05D004734 ORTHO05D006019 2.7e-166 590.1 552 56.2
C03p21580 Brassica napus HOM05D004734 ORTHO05D006019 3.5e-166 589.7 739 47.5
BolC4t23215H Brassica oleracea HOM05D004734 ORTHO05D006019 6.1e-166 589.0 762 45.5
A03p18530 Brassica napus HOM05D004734 ORTHO05D006019 7.9e-166 588.6 738 47.7
LjContig00029g0002265 Lotus japonicus HOM05D004734 ORTHO05D006019 1.9e-164 583.9 535 57.9
AUR62017577 Chenopodium quinoa HOM05D004734 ORTHO05D006019 2.5e-164 583.6 734 45.2
FvH4_6g41900 Fragaria vesca HOM05D004734 ORTHO05D006019 2.8e-163 580.1 538 56.3
Psat2g026760 Pisum sativum HOM05D004734 ORTHO05D006019 4.8e-163 579.3 535 57.2
Rhsim06G0169400 Rhododendron simsii HOM05D004734 ORTHO05D006019 2.4e-162 577.0 723 48.3
C04p16650 Brassica napus HOM05D004734 ORTHO05D006019 1.9e-159 567.4 746 45.8
Dinv39761 Davidia involucrata HOM05D004734 ORTHO05D006019 3.0e-157 560.1 516 57.9
Duzib211G0196 Durio zibethinus HOM05D004734 ORTHO05D006019 3.0e-157 560.1 734 45.6
SEGI_13952 Sequoiadendron giganteum HOM05D004734 ORTHO05D006019 6.7e-157 558.9 741 44.0
CsaV3_6G015550 Cucumis sativus L. HOM05D004734 ORTHO05D006019 2.0e-156 557.4 541 55.3
ECA236G2537 Erigeron canadensis HOM05D004734 ORTHO05D006019 1.3e-155 554.7 619 49.8
Sopen05g026560 Solanum pennellii HOM05D004734 ORTHO05D006019 1.3e-155 554.7 545 54.3
PGSC0003DMG400019206 Solanum tuberosum HOM05D004734 ORTHO05D006019 3.7e-147 526.6 501 56.1
Cpa.g.sc132.37 Carica papaya HOM05D004734 ORTHO05D006019 7.7e-145 518.8 710 44.6
Zm00001eb114880 Zea mays HOM05D004734 ORTHO05D006019 3.8e-144 516.5 589 48.9
Hma1.2p1_0445F.1_g154190 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 8.5e-144 515.4 433 61.9
TPR.G6822 Trifolium pratense HOM05D004734 ORTHO05D006019 7.2e-143 512.3 585 48.9
AUR62015114 Chenopodium quinoa HOM05D004734 ORTHO05D006019 1.0e-141 508.4 729 42.9
Hma1.2p1_2840F.1_g329330 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 4.4e-140 503.1 497 56.1
HPP92_000240 Vanilla planifolia HOM05D004734 ORTHO05D006019 5.5e-135 486.1 487 51.7
Hund08442 Selenicereus undatus HOM05D004734 ORTHO05D006019 9.8e-132 475.3 735 40.3
SHI10094 Sapria himalayana HOM05D004734 ORTHO05D006019 2.1e-118 431.0 427 52.5
Sabra02G0171200 Salix brachista HOM05D004734 ORTHO05D006019 1.7e-107 394.8 516 45.2
Psat1g135920 Pisum sativum HOM05D004734 ORTHO05D006019 3.7e-107 393.7 333 60.1
Psat0s1468g0040 Pisum sativum HOM05D004734 ORTHO05D006019 6.6e-96 356.3 326 57.1
Psat0s1468g0080 Pisum sativum HOM05D004734 ORTHO05D006019 1.1e-90 339.0 284 60.9
Mapoly0004s0108 Marchantia polymorpha HOM05D004734 ORTHO05D006019 3.2e-90 337.4 809 31.0
unitig_8.g4607 Utricularia gibba HOM05D004734 ORTHO05D006019 5.1e-88 330.1 380 49.5
Peaxi162Scf00977g00312 Petunia axillaris HOM05D004734 ORTHO05D006019 2.8e-86 324.3 263 63.5
Ca_06067_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 2.3e-80 304.7 490 40.8
Pp3c3_5560 Physcomitrium patens HOM05D004734 ORTHO05D006019 1.9e-79 301.6 720 30.1
Peaxi162Scf00977g00315 Petunia axillaris HOM05D004734 ORTHO05D006019 2.1e-78 298.1 481 41.4
Ca_06064_v3 Cicer arietinum L. HOM05D004734 ORTHO05D000733 2.8e-78 297.7 359 49.3
Os11g0545700 Oryza sativa ssp. japonica HOM05D004734 ORTHO05D006019 1.8e-77 295.0 264 59.1
COL.COLO4_07254 Corchorus olitorius HOM05D004734 ORTHO05D006019 4.2e-74 283.9 501 38.5
Psat5g176200 Pisum sativum HOM05D004734 ORTHO05D006019 6.0e-73 280.0 230 63.0
SMO200G0072 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 3.9e-72 277.3 725 27.7
Zm00001eb113720 Zea mays HOM05D004734 ORTHO05D006019 3.1e-61 241.1 210 58.1
RcHm_v2.0_Chr1g0340131 Rosa chinensis HOM05D004734 ORTHO05D006019 4.0e-61 240.7 177 66.1
unitig_8.g4608 Utricularia gibba HOM05D004734 ORTHO05D006019 2.1e-54 218.4 353 37.4
RcHm_v2.0_Chr1g0340141 Rosa chinensis HOM05D004734 ORTHO05D006019 5.3e-45 187.2 215 43.7
CBR_g30206 Chara braunii HOM05D004734 ORTHO05D006019 5.5e-42 177.2 612 24.0
HPP92_028626 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.6e-33 149.1 418 30.6
HPP92_028624 Vanilla planifolia HOM05D004734 ORTHO05D006019 6.1e-33 147.1 418 30.4
Atru.chr12.2374 Acer truncatum HOM05D004734 ORTHO05D006019 1.5e-23 115.9 195 37.9
TPR.G146 Trifolium pratense HOM05D004734 ORTHO05D006019 5.7e-23 114.0 112 55.4
SHI10095 Sapria himalayana HOM05D004734 ORTHO05D006019 6.3e-22 110.5 229 34.5
RcHm_v2.0_Chr0c20g0500271 Rosa chinensis HOM05D004734 ORTHO05D006019 7.0e-21 107.1 283 29.7
Ca_06065_v3 Cicer arietinum L. HOM05D004734 ORTHO05D001394 4.5e-20 104.4 84 60.7
Psat1g136480 Pisum sativum HOM05D002598 ORTHO05D014892 5.9e-20 104.0 88 58.0
Ca_31316_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 1.0e-19 103.2 88 59.1
HPP92_028625 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.2e-17 96.3 72 65.3
Medtr5g084823 Medicago truncatula HOM05D004734 ORTHO05D006019 1.3e-14 86.3 196 33.7
HPP92_028623 Vanilla planifolia HOM05D004734 ORTHO05D006019 2.8e-14 85.1 64 64.1
HPP92_000155 Vanilla planifolia HOM05D004734 ORTHO05D006019 9.1e-13 80.1 248 29.8
CBR_g3444 Chara braunii HOM05D000019 ORTHO05D000353 1.3e-11 76.3 119 41.2
RcHm_v2.0_Chr1g0340121 Rosa chinensis HOM05D004734 ORTHO05D006019 2.2e-11 75.5 85 50.6
SMO278G0012 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 3.2e-10 71.6 147 34.7
FvH4_1g12421 Fragaria vesca HOM05D058264 ORTHO05D029456 1.0e-08 66.6 114 34.2


User provided reference genes

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