Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1128G053 Amborella trichopoda HOM05D003787 ORTHO05D001736 1.4e-149 533.1 301 100.0
ATR0177G031 Amborella trichopoda HOM05D003787 ORTHO05D001736 2.7e-105 386.0 346 65.3
ATR1101G066 Amborella trichopoda HOM05D003787 ORTHO05D001736 1.8e-96 356.7 224 85.7
ATR1128G011 Amborella trichopoda HOM05D003787 ORTHO05D001736 2.0e-55 220.3 131 88.5
ATR1101G105 Amborella trichopoda HOM05D003787 ORTHO05D001736 9.8e-55 218.0 151 88.1
TAR374G1256 Trochodendron aralioides HOM05D003787 ORTHO05D001736 4.3e-18 96.3 328 31.1
TAR622G0628 Trochodendron aralioides HOM05D003787 ORTHO05D001736 7.6e-15 85.5 327 30.3
MBI19_g14007_MAGBIO Magnolia biondii HOM05D006637 ORTHO05D001736 1.3e-14 84.7 149 43.0
CiPaw.05G124800 Carya illinoinensis HOM05D003787 ORTHO05D001736 2.2e-14 84.0 320 30.9
TAR371G0370 Trochodendron aralioides HOM05D006637 ORTHO05D001736 3.8e-14 83.2 315 31.7
Duzib251G0768 Durio zibethinus HOM05D003787 ORTHO05D001736 1.9e-13 80.9 152 40.8
TWI60G0888 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 3.2e-13 80.1 222 35.6
QL03p074082 Quercus lobata HOM05D003787 ORTHO05D001736 2.1e-12 77.4 279 30.1
Thecc.02G330000 Theobroma cacao HOM05D003787 ORTHO05D001736 2.1e-12 77.4 152 37.5
ClCG05G023700 Citrullus lanatus HOM05D003787 ORTHO05D001736 3.5e-12 76.6 158 39.2
Lalb_Chr06g0174951 Lupinus albus HOM05D003787 ORTHO05D001736 6.0e-12 75.9 199 36.7
HPP92_003197 Vanilla planifolia HOM05D003787 ORTHO05D001736 1.0e-11 75.1 231 31.2
Nn3g17457 Nelumbo nucifera HOM05D003787 ORTHO05D001736 1.3e-11 74.7 166 38.0
Duzib268G1106 Durio zibethinus HOM05D003787 ORTHO05D001736 1.8e-11 74.3 301 29.9
Cfa007670 Carpinus fangiana HOM05D003787 ORTHO05D001736 8.7e-11 72.0 196 31.6
Aqoxy3G00509 Aquilegia oxysepala HOM05D006637 ORTHO05D001736 1.5e-10 71.2 241 28.6
CANSAT64G2286 Cannabis sativa HOM05D003787 ORTHO05D001736 1.9e-10 70.9 156 50.6
CDE05G3272 Ceratophyllum demersum HOM05D003787 ORTHO05D001736 1.9e-10 70.9 160 36.9
Os07g0298100 Oryza sativa ssp. japonica HOM05D003787 ORTHO05D001736 1.9e-10 70.9 52 61.5
GSVIVG01012223001 Vitis vinifera HOM05D003787 ORTHO05D001736 2.5e-10 70.5 157 36.9
Lj2g0021607 Lotus japonicus HOM05D003787 ORTHO05D001736 4.3e-10 69.7 112 42.0
Manes.02G055200 Manihot esculenta HOM05D003787 ORTHO05D001736 4.3e-10 69.7 192 31.8
GSVIVG01007850001 Vitis vinifera HOM05D006637 ORTHO05D001736 4.3e-10 69.7 198 34.3
MELO3C012154.2 Cucumis melo HOM05D003787 ORTHO05D001736 5.6e-10 69.3 163 35.6
CSS0001662 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 7.4e-10 68.9 91 45.1
SHI06685 Sapria himalayana HOM05D003787 ORTHO05D001736 7.4e-10 68.9 67 53.7
Actinidia17586 Actinidia chinensis HOM05D003787 ORTHO05D001736 9.6e-10 68.6 156 35.9
Glyma.19G030300 Glycine max HOM05D003787 ORTHO05D001736 9.6e-10 68.6 187 32.6
Sabra10G0120000 Salix brachista HOM05D003787 ORTHO05D001736 9.6e-10 68.6 156 34.6
SHI15724 Sapria himalayana HOM05D003787 ORTHO05D001736 1.3e-09 68.2 159 35.8
TWI79G0236 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 1.3e-09 68.2 171 36.8
Dinv33830 Davidia involucrata HOM05D003787 ORTHO05D001736 1.6e-09 67.8 47 70.2
unitig_32.g11770 Utricularia gibba HOM05D003787 ORTHO05D001736 1.6e-09 67.8 157 36.3
Atru.chr9.567 Acer truncatum HOM05D006637 ORTHO05D001736 2.1e-09 67.4 58 55.2
CDE04G2454 Ceratophyllum demersum HOM05D003787 ORTHO05D001736 2.1e-09 67.4 51 70.6
CDE02G2765 Ceratophyllum demersum HOM05D003787 ORTHO05D001736 2.8e-09 67.0 160 34.4
CsaV3_5G033340 Cucumis sativus L. HOM05D003787 ORTHO05D001736 2.8e-09 67.0 168 34.5
MD13G1062500 Malus domestica HOM05D003787 ORTHO05D001736 2.8e-09 67.0 159 39.0
Gohir.D04G043300 Gossypium hirsutum HOM05D003787 ORTHO05D001736 3.7e-09 66.6 75 48.0
Gorai.012G048600 Gossypium raimondii HOM05D003787 ORTHO05D001736 3.7e-09 66.6 75 48.0
Lju41C3T13 Lonicera japonica HOM05D003787 ORTHO05D001736 3.7e-09 66.6 66 56.1
Nn4g23435 Nelumbo nucifera HOM05D006637 ORTHO05D001736 3.7e-09 66.6 179 37.4
PSO017G7320 Papaver somniferum HOM05D006637 ORTHO05D001736 3.7e-09 66.6 166 35.5
PSO478G0913 Papaver somniferum HOM05D006637 ORTHO05D001736 3.7e-09 66.6 166 35.5
Prupe.1G287500 Prunus persica HOM05D003787 ORTHO05D001736 3.7e-09 66.6 163 38.0
CSS0023913 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 4.8e-09 66.2 233 29.6
Eucgr.I02036 Eucalyptus grandis HOM05D003787 ORTHO05D001736 4.8e-09 66.2 154 35.7
MD16G1060800 Malus domestica HOM05D003787 ORTHO05D001736 4.8e-09 66.2 160 36.9
Cpa.g.sc14.178 Carica papaya HOM05D003787 ORTHO05D001736 6.2e-09 65.9 116 37.9
Glyma.13G056300 Glycine max HOM05D003787 ORTHO05D001736 6.2e-09 65.9 111 38.7
PSO017G1216 Papaver somniferum HOM05D006637 ORTHO05D001736 6.2e-09 65.9 46 69.6
PSO478G3423 Papaver somniferum HOM05D006637 ORTHO05D001736 6.2e-09 65.9 46 69.6
Psat1g068800 Pisum sativum HOM05D003787 ORTHO05D001736 6.2e-09 65.9 131 35.9
PGR119G1736 Punica granatum HOM05D003787 ORTHO05D001736 6.2e-09 65.9 167 34.1
Sabra08G0072600 Salix brachista HOM05D003787 ORTHO05D001736 6.2e-09 65.9 191 34.0
Gohir.A05G372300 Gossypium hirsutum HOM05D003787 ORTHO05D001736 8.2e-09 65.5 75 48.0
Haze_14428 Corylus avellana HOM05D003787 ORTHO05D001736 1.1e-08 65.1 173 32.9
Potri.010G158000 Populus trichocarpa HOM05D003787 ORTHO05D001736 1.1e-08 65.1 174 36.2
Sabra17G0083100 Salix brachista HOM05D003787 ORTHO05D001736 1.1e-08 65.1 101 43.6
Migut.K01274 Erythranthe guttata HOM05D003787 ORTHO05D001736 1.4e-08 64.7 81 48.1
Potri.008G096300 Populus trichocarpa HOM05D003787 ORTHO05D001736 1.4e-08 64.7 192 33.3
TAR629G2847 Trochodendron aralioides HOM05D003787 ORTHO05D001736 1.4e-08 64.7 316 28.5
Thecc.04G095900 Theobroma cacao HOM05D003787 ORTHO05D001736 1.8e-08 64.3 168 33.9
Nitab4.5_0007320g0010 Nicotiana tabacum HOM05D003787 ORTHO05D001736 2.4e-08 63.9 98 41.8
PGR004G1779 Punica granatum HOM05D003787 ORTHO05D001736 2.4e-08 63.9 101 40.6
Atru.chr8.428 Acer truncatum HOM05D003787 ORTHO05D001736 3.1e-08 63.5 204 28.9
CiPaw.03G088400 Carya illinoinensis HOM05D003787 ORTHO05D001736 3.1e-08 63.5 181 30.4
Duzib187G0666 Durio zibethinus HOM05D003787 ORTHO05D001736 3.1e-08 63.5 169 32.0
Migut.H00622 Erythranthe guttata HOM05D003787 ORTHO05D001736 3.1e-08 63.5 179 32.4
Nitab4.5_0003841g0060 Nicotiana tabacum HOM05D003787 ORTHO05D001736 3.1e-08 63.5 98 41.8
SGA_v2.0_scaffold148G36413 Striga asiatica HOM05D003787 ORTHO05D001736 3.1e-08 63.5 52 57.7
ClCG11G004790 Citrullus lanatus HOM05D003787 ORTHO05D001736 4.0e-08 63.2 63 57.1
Rhsim10G0049700 Rhododendron simsii HOM05D003787 ORTHO05D001736 4.0e-08 63.2 187 31.0
Sabra12G0044700 Salix brachista HOM05D006637 ORTHO05D001736 4.0e-08 63.2 183 33.3
Zm00001eb305470 Zea mays HOM05D003787 ORTHO05D001736 4.0e-08 63.2 82 46.3
FAN07G1127 Fragaria x ananassa HOM05D005972 ORTHO05D007548 6.9e-08 62.4 153 35.9
Hma1.2p1_0566F.1_g179820 Hydrangea macrophylla HOM05D003787 ORTHO05D001736 6.9e-08 62.4 191 31.4
TWI75G0087 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 6.9e-08 62.4 164 33.5
Ca_04304_v3 Cicer arietinum L. HOM05D003787 ORTHO05D001736 9.0e-08 62.0 47 68.1
MELO3C022033.2 Cucumis melo HOM05D003787 ORTHO05D001736 9.0e-08 62.0 83 44.6
Potri.017G094300 Populus trichocarpa HOM05D003787 ORTHO05D001736 9.0e-08 62.0 68 48.5
TWI81G0402 Tripterygium wilfordii HOM05D006637 ORTHO05D001736 9.0e-08 62.0 265 27.5
MD09G1067000 Malus domestica HOM05D003787 ORTHO05D001736 1.2e-07 61.6 83 45.8
MD17G1059900 Malus domestica HOM05D003787 ORTHO05D001736 1.2e-07 61.6 132 34.8
vmacro16493 Vaccinium macrocarpon HOM05D006637 ORTHO05D001736 1.2e-07 61.6 70 52.9
Aqoxy3G03685 Aquilegia oxysepala HOM05D006637 ORTHO05D001736 2.0e-07 60.8 202 31.7
ClCG06G015610 Citrullus lanatus HOM05D006637 ORTHO05D001736 2.0e-07 60.8 50 60.0
FAN12G3642 Fragaria x ananassa HOM05D005972 ORTHO05D007548 2.0e-07 60.8 154 37.7
Potri.004G120400 Populus trichocarpa HOM05D003787 ORTHO05D001736 2.0e-07 60.8 125 35.2
Rhsim09G0127000 Rhododendron simsii HOM05D003787 ORTHO05D001736 2.0e-07 60.8 77 50.6
Cpa.g.sc10.158 Carica papaya HOM05D006637 ORTHO05D001736 2.6e-07 60.5 163 31.3
MELO3C017227.2 Cucumis melo HOM05D006637 ORTHO05D001736 2.6e-07 60.5 43 67.4
CsaV3_1G002960 Cucumis sativus L. HOM05D006637 ORTHO05D001736 2.6e-07 60.5 43 67.4
Duzib264G1237 Durio zibethinus HOM05D003787 ORTHO05D001736 2.6e-07 60.5 168 33.9
Oeu007068.1 Olea europaea HOM05D003787 ORTHO05D001736 2.6e-07 60.5 169 30.8
Peaxi162Scf00166g00047 Petunia axillaris HOM05D003787 ORTHO05D001736 2.6e-07 60.5 100 43.0
Potri.012G061700 Populus trichocarpa HOM05D006637 ORTHO05D001736 2.6e-07 60.5 178 32.6
Sabra04G0069600 Salix brachista HOM05D003787 ORTHO05D001736 2.6e-07 60.5 121 33.9
Sc10g0009690 Simmondsia chinensis HOM05D006637 ORTHO05D001736 2.6e-07 60.5 179 35.8
TWI15G0882 Tripterygium wilfordii HOM05D006637 ORTHO05D001736 2.6e-07 60.5 234 30.3
TWI31G1463 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 4.5e-07 59.7 67 53.7
HPP92_011441 Vanilla planifolia HOM05D003787 ORTHO05D001736 4.5e-07 59.7 169 32.0
Cc07_g04250 Coffea canephora HOM05D003787 ORTHO05D001736 5.8e-07 59.3 72 45.8
Prupe.3G254700 Prunus persica HOM05D003787 ORTHO05D001736 5.8e-07 59.3 47 61.7
SGA_v2.0_scaffold154G37113 Striga asiatica HOM05D003787 ORTHO05D001736 5.8e-07 59.3 46 58.7
COL.COLO4_27878 Corchorus olitorius HOM05D003787 ORTHO05D001736 7.6e-07 58.9 150 32.7
Haze_07733 Corylus avellana HOM05D006637 ORTHO05D001736 7.6e-07 58.9 56 48.2
FAN22G0001 Fragaria x ananassa HOM05D003787 ORTHO05D001736 7.6e-07 58.9 154 36.4
Sed0011679 Sechium edule HOM05D003787 ORTHO05D001736 7.6e-07 58.9 45 62.2
SGA_v2.0_scaffold52G19142 Striga asiatica HOM05D003787 ORTHO05D001736 7.6e-07 58.9 153 30.1
Thecc.03G102400 Theobroma cacao HOM05D006637 ORTHO05D001736 7.6e-07 58.9 150 36.0
CSS0036361 Camellia sinensis var. sinensis HOM05D006637 ORTHO05D001736 1.0e-06 58.5 219 27.9
CsaV3_5G038510 Cucumis sativus L. HOM05D003787 ORTHO05D001736 1.3e-06 58.2 169 32.0
Gorai.007G082600 Gossypium raimondii HOM05D003787 ORTHO05D001736 1.3e-06 58.2 97 41.2
Manes.01G096200 Manihot esculenta HOM05D003787 ORTHO05D001736 1.3e-06 58.2 57 54.4
RcHm_v2.0_Chr4g0438271 Rosa chinensis HOM05D003787 ORTHO05D001736 1.3e-06 58.2 162 35.2
Gohir.D11G076900 Gossypium hirsutum HOM05D003787 ORTHO05D001736 1.7e-06 57.8 73 46.6
CSS0033309 Camellia sinensis var. sinensis HOM05D006637 ORTHO05D001736 2.2e-06 57.4 159 32.1
Cpa.g.sc1.128 Carica papaya HOM05D003787 ORTHO05D001736 2.2e-06 57.4 83 48.2
DCAR_024124 Daucus carota HOM05D003787 ORTHO05D001736 2.2e-06 57.4 265 29.1
Migut.L01187 Erythranthe guttata HOM05D003787 ORTHO05D001736 2.2e-06 57.4 74 45.9
FvH4_4g29990 Fragaria vesca HOM05D003787 ORTHO05D001736 2.2e-06 57.4 154 36.4
Lalb_Chr02g0158901 Lupinus albus HOM05D003787 ORTHO05D001736 2.2e-06 57.4 84 42.9
Medtr6g015240 Medicago truncatula HOM05D003787 ORTHO05D001736 2.2e-06 57.4 52 59.6
Oeu044877.1 Olea europaea HOM05D006637 ORTHO05D001736 2.2e-06 57.4 190 29.5
Actinidia16162 Actinidia chinensis HOM05D003787 ORTHO05D001736 2.9e-06 57.0 87 42.5
Cfa019342 Carpinus fangiana HOM05D000824 ORTHO05D003555 2.9e-06 57.0 164 34.1
CiPaw.04G055500 Carya illinoinensis HOM05D003787 ORTHO05D001736 2.9e-06 57.0 155 32.9
Dinv16736 Davidia involucrata HOM05D003787 ORTHO05D001736 2.9e-06 57.0 99 42.4
FAN17G0759 Fragaria x ananassa HOM05D003787 ORTHO05D001736 3.8e-06 56.6 83 43.4
Lj2g0027532 Lotus japonicus HOM05D014318 ORTHO05D001736 3.8e-06 56.6 84 40.5
TPR.G10000 Trifolium pratense HOM05D003787 ORTHO05D001736 3.8e-06 56.6 70 47.1
HPP92_007004 Vanilla planifolia HOM05D003787 ORTHO05D001736 3.8e-06 56.6 71 46.5
ATR1128G085 Amborella trichopoda HOM05D003787 ORTHO05D001736 4.9e-06 56.2 29 96.6
Ciclev10023416m.g Citrus clementina HOM05D006637 ORTHO05D001736 4.9e-06 56.2 128 31.2
Potri.015G057200 Populus trichocarpa HOM05D006637 ORTHO05D001736 4.9e-06 56.2 306 27.5
arahy.Tifrunner.gnm1.ann1.NP9FW8 Arachis hypogaea HOM05D003787 ORTHO05D001736 6.5e-06 55.8 56 51.8
CANSAT64G1049 Cannabis sativa HOM05D003787 ORTHO05D001736 6.5e-06 55.8 57 49.1
Haze_11903 Corylus avellana HOM05D003787 ORTHO05D001736 6.5e-06 55.8 39 66.7
Duzib068G0311 Durio zibethinus HOM05D006637 ORTHO05D001736 6.5e-06 55.8 57 54.4
Lalb_Chr21g0318351 Lupinus albus HOM05D003787 ORTHO05D001736 6.5e-06 55.8 39 64.1
Sed0008450 Sechium edule HOM05D006637 ORTHO05D001736 6.5e-06 55.8 57 52.6
Actinidia13966 Actinidia chinensis HOM05D003787 ORTHO05D001736 8.4e-06 55.5 59 52.5
Prupe.5G205600 Prunus persica HOM05D006637 ORTHO05D001736 8.4e-06 55.5 89 38.2


User provided reference genes

Program Settings