Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1127G230 Amborella trichopoda HOM05D007521 ORTHO05D009387 8.7e-131 470.3 238 100.0
TAR636G2090 Trochodendron aralioides HOM05D007521 ORTHO05D009387 4.1e-56 222.2 236 56.8
PSO384G1785 Papaver somniferum HOM05D007521 ORTHO05D009387 3.0e-54 216.1 231 53.2
Nn2g10221 Nelumbo nucifera HOM05D007521 ORTHO05D009387 1.1e-53 214.2 231 53.2
PSO339G2910 Papaver somniferum HOM05D007521 ORTHO05D009387 5.6e-53 211.8 223 52.9
Aqoxy4G03316 Aquilegia oxysepala HOM05D007521 ORTHO05D009387 1.1e-51 207.6 210 56.7
vmacro09945 Vaccinium macrocarpon HOM05D006307 ORTHO05D008123 4.0e-51 205.7 230 50.0
MD07G1238600 Malus domestica HOM05D007521 ORTHO05D009387 5.8e-50 201.8 242 48.3
Dinv34514 Davidia involucrata HOM05D007521 ORTHO05D009387 7.5e-50 201.4 215 51.6
GSVIVG01032870001 Vitis vinifera HOM05D007521 ORTHO05D009387 1.3e-49 200.7 204 52.9
Migut.F00560 Erythranthe guttata HOM05D007521 ORTHO05D009387 3.7e-49 199.1 206 52.9
Prupe.2G267400 Prunus persica HOM05D007521 ORTHO05D009387 8.3e-49 198.0 247 48.2
Lsat_1_v5_gn_8_11100 Lactuca sativa HOM05D007521 ORTHO05D009387 7.0e-48 194.9 184 54.3
TWI09G0709 Tripterygium wilfordii HOM05D007521 ORTHO05D009387 7.0e-48 194.9 215 51.2
PGSC0003DMG400011658 Solanum tuberosum HOM05D007521 ORTHO05D009387 2.7e-47 193.0 236 47.5
ECA233G6052 Erigeron canadensis HOM05D007521 ORTHO05D009387 6.0e-47 191.8 227 49.3
Lj1g0021108 Lotus japonicus HOM05D007521 ORTHO05D009387 1.7e-46 190.3 230 48.3
Lalb_Chr11g0067611 Lupinus albus HOM05D007521 ORTHO05D009387 1.7e-46 190.3 231 48.5
Actinidia31757 Actinidia chinensis HOM05D007521 ORTHO05D009387 2.3e-46 189.9 207 52.7
Potri.019G065400 Populus trichocarpa HOM05D007521 ORTHO05D009387 3.9e-46 189.1 226 49.6
QL08p065346 Quercus lobata HOM05D007521 ORTHO05D009387 3.9e-46 189.1 228 46.9
Cc02_g05020 Coffea canephora HOM05D007521 ORTHO05D009387 5.1e-46 188.7 207 50.7
MSTRG.8869 Avicennia marina HOM05D007521 ORTHO05D009387 8.6e-46 188.0 217 47.9
TPR.G13979 Trifolium pratense HOM05D007521 ORTHO05D009387 8.6e-46 188.0 214 47.7
Ciclev10033598m.g Citrus clementina HOM05D007521 ORTHO05D009387 4.3e-45 185.7 216 51.9
Sc11g0006120 Simmondsia chinensis HOM05D007521 ORTHO05D009387 4.3e-45 185.7 221 47.5
Cc02_g04870 Coffea canephora HOM05D007521 ORTHO05D009387 5.6e-45 185.3 230 46.1
CiPaw.08G156100 Carya illinoinensis HOM05D007521 ORTHO05D009387 7.3e-45 184.9 222 47.7
FAN10G3062 Fragaria x ananassa HOM05D007521 ORTHO05D009387 7.3e-45 184.9 254 46.1
FvH4_7g26320 Fragaria vesca HOM05D007521 ORTHO05D009387 1.6e-44 183.7 223 49.8
Duzib114G0131 Durio zibethinus HOM05D007521 ORTHO05D009387 2.1e-44 183.3 226 47.3
RcHm_v2.0_Chr1g0372781 Rosa chinensis HOM05D007521 ORTHO05D009387 2.1e-44 183.3 256 44.5
Medtr3g093540 Medicago truncatula HOM05D007521 ORTHO05D009387 2.8e-44 183.0 206 50.0
Gohir.D05G278400 Gossypium hirsutum HOM05D007521 ORTHO05D009387 4.7e-44 182.2 226 47.8
Gorai.009G291900 Gossypium raimondii HOM05D007521 ORTHO05D009387 6.2e-44 181.8 226 48.2
Nitab4.5_0011372g0030 Nicotiana tabacum HOM05D007521 ORTHO05D009387 1.1e-43 181.0 214 47.2
Gohir.A05G276700 Gossypium hirsutum HOM05D007521 ORTHO05D009387 1.8e-43 180.3 226 48.2
Nitab4.5_0000375g0330 Nicotiana tabacum HOM05D007521 ORTHO05D009387 3.1e-43 179.5 230 45.2
CANSAT56G2803 Cannabis sativa HOM05D007521 ORTHO05D009387 4.0e-43 179.1 213 48.4
FAN06G0083 Fragaria x ananassa HOM05D007521 ORTHO05D009387 6.8e-43 178.3 232 48.3
Ca_16847_v3 Cicer arietinum L. HOM05D006307 ORTHO05D008123 8.9e-43 177.9 188 51.1
Cpa.g.sc65.80 Carica papaya HOM05D007521 ORTHO05D009387 1.5e-42 177.2 215 48.4
Psat5g070120 Pisum sativum HOM05D007521 ORTHO05D009387 1.5e-42 177.2 214 47.2
HanXRQChr08g0223011 Helianthus annuus HOM05D007521 ORTHO05D009387 3.4e-42 176.0 207 47.8
Eucgr.G03172 Eucalyptus grandis HOM05D007521 ORTHO05D009387 9.9e-42 174.5 239 47.3
Thecc.10G187600 Theobroma cacao HOM05D007521 ORTHO05D009387 3.7e-41 172.6 226 46.5
EL10Ac2g02694 Beta vulgaris HOM05D007521 ORTHO05D009387 4.9e-41 172.2 207 49.3
Atru.BG.268.p Acer truncatum HOM05D007521 ORTHO05D009387 4.1e-40 169.1 197 49.7
Glyma.04G224700 Glycine max HOM05D007521 ORTHO05D009387 4.1e-40 169.1 205 48.8
PGR142G4361 Punica granatum HOM05D007521 ORTHO05D009387 4.1e-40 169.1 212 48.6
unitig_37.g11916 Utricularia gibba HOM05D007521 ORTHO05D009387 3.5e-39 166.0 200 46.0
arahy.Tifrunner.gnm1.ann1.Q2LGCQ Arachis hypogaea HOM05D007521 ORTHO05D009387 6.0e-39 165.2 207 45.9
VMungo1309G1947 Vigna mungo HOM05D006307 ORTHO05D008123 1.0e-38 164.5 240 45.0
THA.LOC104811673 Tarenaya hassleriana HOM05D007521 ORTHO05D009387 3.0e-38 162.9 188 51.1
SGA_v2.0_scaffold60G20871 Striga asiatica HOM05D006307 ORTHO05D008123 5.1e-38 162.2 224 46.0
Zm00001eb284340 Zea mays HOM05D007521 ORTHO05D009387 5.6e-37 158.7 208 47.1
Phvul.009G041300 Phaseolus vulgaris HOM05D007521 ORTHO05D009387 9.5e-37 157.9 192 47.9
CSS0047724 Camellia sinensis var. sinensis HOM05D007521 ORTHO05D009387 6.2e-36 155.2 165 55.2
Sabra19G0079100 Salix brachista HOM05D007521 ORTHO05D009387 1.1e-35 154.5 228 45.2
CDE11G1245 Ceratophyllum demersum HOM05D007521 ORTHO05D009387 3.1e-35 152.9 150 56.0
Hma1.2p1_0264F.1_g105770 Hydrangea macrophylla HOM05D007521 ORTHO05D009387 4.0e-35 152.5 218 44.5
CiPaw.08G155800 Carya illinoinensis HOM05D007521 ORTHO05D009387 8.9e-35 151.4 223 43.0
Carub.0007s2116 Capsella rubella HOM05D007521 ORTHO05D009387 9.9e-34 147.9 201 43.8
A01p11790 Brassica napus HOM05D007521 ORTHO05D009387 3.8e-33 146.0 188 46.3
BraA01t01121Z Brassica rapa HOM05D007521 ORTHO05D009387 8.4e-33 144.8 191 45.5
Peaxi162Scf00167g01120 Petunia axillaris HOM05D007521 ORTHO05D009387 1.9e-32 143.7 160 50.0
AL7G33920 Arabidopsis lyrata HOM05D007521 ORTHO05D009387 2.4e-32 143.3 198 43.9
BcaC09g51354 Brassica carinata HOM05D007521 ORTHO05D009387 3.2e-32 142.9 191 45.5
Aa31LG6G2400 Aethionema arabicum HOM05D007521 ORTHO05D009387 4.2e-32 142.5 217 41.0
HPP92_019762 Vanilla planifolia HOM05D007521 ORTHO05D009387 9.2e-32 141.4 172 49.4
Mapoly0070s0078 Marchantia polymorpha HOM05D007521 ORTHO05D009387 1.6e-31 140.6 214 39.7
Pp3c3_11210 Physcomitrium patens HOM05D007521 ORTHO05D009387 1.6e-31 140.6 207 42.5
C01p13990 Brassica napus HOM05D007521 ORTHO05D009387 3.5e-31 139.4 199 43.2
BolC1t01366H Brassica oleracea HOM05D007521 ORTHO05D009387 3.5e-31 139.4 199 43.2
BcaNung01738 Brassica carinata HOM05D007521 ORTHO05D009387 7.8e-31 138.3 210 41.4
Sp7g18440 Schrenkiella parvula HOM05D007521 ORTHO05D009387 1.3e-30 137.5 210 41.9
CARHR226760 Cardamine hirsuta HOM05D007521 ORTHO05D009387 6.6e-30 135.2 204 42.6
DCAR_018052 Daucus carota HOM05D006307 ORTHO05D009387 1.9e-29 133.7 176 46.6
arahy.Tifrunner.gnm1.ann1.RI9J7M Arachis hypogaea HOM05D006307 ORTHO05D008123 1.2e-28 131.0 217 40.6
SEGI_30344 Sequoiadendron giganteum HOM05D007521 ORTHO05D009387 1.2e-28 131.0 164 48.8
AagrBONN_evm.TU.Sc2ySwM_228.2023 Anthoceros agrestis HOM05D007521 ORTHO05D009387 6.9e-27 125.2 186 41.4
Lj8C51T1 Lonicera japonica HOM05D007521 ORTHO05D009387 1.0e-22 111.3 129 48.8
SMO356G0638 Selaginella moellendorffii HOM05D007521 ORTHO05D009387 5.1e-22 109.0 182 40.1
Actinidia07775 Actinidia chinensis HOM05D007521 ORTHO05D009387 4.8e-20 102.4 154 43.5
Solyc05g052170.4 Solanum lycopersicum HOM05D007521 ORTHO05D009387 8.1e-20 101.7 143 44.1
Sopen05g030700 Solanum pennellii HOM05D007521 ORTHO05D009387 1.1e-19 101.3 142 45.8
Cfa001178 Carpinus fangiana HOM05D007521 ORTHO05D009387 1.4e-19 100.9 130 48.5
Ah.12g064700 Amaranthus hybridus HOM05D007521 ORTHO05D009387 2.4e-19 100.1 86 57.0
Oeu001369.2 Olea europaea HOM05D007521 ORTHO05D009387 2.4e-19 100.1 123 50.4
Gohir.D10G155835 Gossypium hirsutum HOM05D007521 ORTHO05D009387 3.4e-18 96.3 80 58.8
Gorai.011G175800 Gossypium raimondii HOM05D007521 ORTHO05D009387 3.9e-14 82.8 78 53.8
Hund13426 Selenicereus undatus HOM05D007521 ORTHO05D009387 6.7e-14 82.0 201 33.8
COL.COLO4_19497 Corchorus olitorius HOM05D007521 ORTHO05D009387 2.5e-13 80.1 145 40.7
Gohir.D11G050600 Gossypium hirsutum HOM05D007521 ORTHO05D009387 4.3e-13 79.3 82 51.2
Gorai.007G054900 Gossypium raimondii HOM05D007521 ORTHO05D009387 2.8e-12 76.6 69 55.1
SEGI_20264 Sequoiadendron giganteum HOM05D007521 ORTHO05D009387 2.8e-12 76.6 76 55.3
Manes.10G004400 Manihot esculenta HOM05D007521 ORTHO05D009387 6.2e-12 75.5 137 40.1
CBR_g4502 Chara braunii HOM05D007521 ORTHO05D009387 1.1e-11 74.7 83 43.4
Thhalv10026093m.g Eutrema salsugineum HOM05D007521 ORTHO05D009387 1.5e-10 70.9 137 39.4
AT4G19985 Arabidopsis thaliana HOM05D007521 ORTHO05D009387 5.8e-10 68.9 139 38.1
Cre10.g464264 Chlamydomonas reinhardtii HOM05D007521 ORTHO05D009387 5.8e-10 68.9 81 39.5
Hma1.2p1_0264F.1_g105780 Hydrangea macrophylla HOM05D007521 ORTHO05D009387 6.4e-09 65.5 61 55.7
Migut.J00015 Erythranthe guttata HOM05D003003 ORTHO05D008343 5.5e-08 62.4 72 43.1
Solyc10g074910.2 Solanum lycopersicum HOM05D003003 ORTHO05D008343 9.3e-08 61.6 137 32.8
Sopen10g027400 Solanum pennellii HOM05D003003 ORTHO05D008343 9.3e-08 61.6 137 32.8
FAN14G2421 Fragaria x ananassa HOM05D003003 ORTHO05D008343 1.2e-07 61.2 72 43.1
CAN.G659.15 Capsicum annuum HOM05D003003 ORTHO05D008343 1.6e-07 60.8 72 43.1
HanXRQChr01g0000501 Helianthus annuus HOM05D003003 ORTHO05D008343 1.6e-07 60.8 72 43.1
VMungo1383G2339 Vigna mungo HOM05D003003 ORTHO05D008343 1.6e-07 60.8 72 43.1
ECA248G3306 Erigeron canadensis HOM05D003003 ORTHO05D008343 2.1e-07 60.5 72 43.1
PGR004G0262 Punica granatum HOM05D003003 ORTHO05D008343 2.1e-07 60.5 72 41.7
Cc06_g00240 Coffea canephora HOM05D003003 ORTHO05D008343 2.7e-07 60.1 72 41.7
Dinv16947 Davidia involucrata HOM05D003003 ORTHO05D008343 2.7e-07 60.1 85 36.5
FvH4_6g09480 Fragaria vesca HOM05D003003 ORTHO05D008343 2.7e-07 60.1 72 41.7
MD04G1177300 Malus domestica HOM05D003003 ORTHO05D008343 2.7e-07 60.1 72 41.7
Peaxi162Scf00374g00029 Petunia axillaris HOM05D003003 ORTHO05D008343 2.7e-07 60.1 137 32.1
Lsat_1_v5_gn_8_123140 Lactuca sativa HOM05D003003 ORTHO05D008343 3.5e-07 59.7 123 30.9
Nitab4.5_0001215g0150 Nicotiana tabacum HOM05D003003 ORTHO05D008343 3.5e-07 59.7 137 32.1
EL10Ac7g17135 Beta vulgaris HOM05D003003 ORTHO05D008343 4.6e-07 59.3 71 42.3
AUR62006445 Chenopodium quinoa HOM05D003003 ORTHO05D008343 4.6e-07 59.3 71 42.3
AUR62029798 Chenopodium quinoa HOM05D003003 ORTHO05D008343 4.6e-07 59.3 71 42.3
CsaV3_4G027340 Cucumis sativus L. HOM05D003003 ORTHO05D008343 4.6e-07 59.3 72 41.7
DCAR_023966 Daucus carota HOM05D003003 ORTHO05D008343 4.6e-07 59.3 74 40.5
Eucgr.K01296 Eucalyptus grandis HOM05D003003 ORTHO05D008343 4.6e-07 59.3 72 41.7
Lalb_Chr03g0043871 Lupinus albus HOM05D003003 ORTHO05D008343 4.6e-07 59.3 72 40.3
Phvul.008G079900 Phaseolus vulgaris HOM05D003003 ORTHO05D008343 4.6e-07 59.3 72 41.7
Sed0024487 Sechium edule HOM05D003003 ORTHO05D008343 4.6e-07 59.3 72 40.3
Ca_07787_v3 Cicer arietinum L. HOM05D003003 ORTHO05D008343 6.0e-07 58.9 72 40.3
ClCG04G006230 Citrullus lanatus HOM05D003003 ORTHO05D008343 6.0e-07 58.9 72 40.3
MD12G1192400 Malus domestica HOM05D003003 ORTHO05D008343 6.0e-07 58.9 72 40.3
Hund19741 Selenicereus undatus HOM05D003003 ORTHO05D008343 6.0e-07 58.9 72 40.3
arahy.Tifrunner.gnm1.ann1.NKAS4C Arachis hypogaea HOM05D003003 ORTHO05D008343 7.9e-07 58.5 72 40.3
arahy.Tifrunner.gnm1.ann1.V4D1ZF Arachis hypogaea HOM05D003003 ORTHO05D008343 7.9e-07 58.5 72 40.3
BcaC05g27931 Brassica carinata HOM05D003003 ORTHO05D008343 7.9e-07 58.5 74 37.8
C05p39360 Brassica napus HOM05D005120 ORTHO05D006174 7.9e-07 58.5 74 37.8
BolC5t32672H Brassica oleracea HOM05D005120 ORTHO05D006174 7.9e-07 58.5 74 37.8
BraA05t21414Z Brassica rapa HOM05D003003 ORTHO05D008343 7.9e-07 58.5 74 37.8
Nitab4.5_0007589g0030 Nicotiana tabacum HOM05D003003 ORTHO05D008343 7.9e-07 58.5 137 31.4
Potri.016G140000 Populus trichocarpa HOM05D003003 ORTHO05D008343 7.9e-07 58.5 72 40.3
Sabra04G0156600 Salix brachista HOM05D003003 ORTHO05D008343 7.9e-07 58.5 72 38.9
Atru.chr8.74 Acer truncatum HOM05D003003 ORTHO05D008343 1.0e-06 58.2 72 38.9
Aa31LG2G13930 Aethionema arabicum HOM05D003003 ORTHO05D008343 1.0e-06 58.2 122 31.1
Gohir.A02G089500 Gossypium hirsutum HOM05D003003 ORTHO05D008343 1.0e-06 58.2 72 40.3
Gohir.D02G106600 Gossypium hirsutum HOM05D003003 ORTHO05D008343 1.0e-06 58.2 72 40.3
Gorai.005G121100 Gossypium raimondii HOM05D003003 ORTHO05D008343 1.0e-06 58.2 72 40.3
Manes.08G168900 Manihot esculenta HOM05D003003 ORTHO05D008343 1.0e-06 58.2 72 40.3
MCO12G079 Micromonas commoda HOM05D003003 ORTHO05D008343 1.0e-06 58.2 76 39.5
Prupe.6G296900 Prunus persica HOM05D003003 ORTHO05D008343 1.0e-06 58.2 72 38.9
THA.LOC104806235 Tarenaya hassleriana HOM05D003003 ORTHO05D008343 1.0e-06 58.2 72 38.9
Haze_21204 Corylus avellana HOM05D003003 ORTHO05D008343 1.3e-06 57.8 72 38.9
Glyma.09G272400 Glycine max HOM05D003003 ORTHO05D008343 1.3e-06 57.8 72 40.3
Glyma.18G216900 Glycine max HOM05D003003 ORTHO05D008343 1.3e-06 57.8 72 40.3
QL07p031603 Quercus lobata HOM05D003003 ORTHO05D008343 1.3e-06 57.8 79 39.2
Sp1g27730 Schrenkiella parvula HOM05D003003 ORTHO05D008343 1.3e-06 57.8 72 38.9
AL1G46140 Arabidopsis lyrata HOM05D003003 ORTHO05D008343 1.8e-06 57.4 72 37.5
AT1G32070 Arabidopsis thaliana HOM05D003003 ORTHO05D008343 1.8e-06 57.4 72 37.5
arahy.Tifrunner.gnm1.ann1.7LY3NN Arachis hypogaea HOM05D003003 ORTHO05D008343 1.8e-06 57.4 72 38.9
BcaB03g13769 Brassica carinata HOM05D003003 ORTHO05D008343 1.8e-06 57.4 72 37.5
A05p25290 Brassica napus HOM05D005120 ORTHO05D006174 1.8e-06 57.4 72 37.5
CANSAT21G0154 Cannabis sativa HOM05D003003 ORTHO05D008343 1.8e-06 57.4 71 40.8
Carub.0001s3039 Capsella rubella HOM05D003003 ORTHO05D008343 1.8e-06 57.4 72 37.5
CARHR031420 Cardamine hirsuta HOM05D003003 ORTHO05D008343 1.8e-06 57.4 72 37.5
CiPaw.09G223200 Carya illinoinensis HOM05D003003 ORTHO05D008343 1.8e-06 57.4 72 38.9
Duzib151G0009 Durio zibethinus HOM05D003003 ORTHO05D008343 1.8e-06 57.4 72 40.3
Actinidia01020 Actinidia chinensis HOM05D007521 ORTHO05D009387 2.3e-06 57.0 86 44.2
MBI15_g36681_MAGBIO Magnolia biondii HOM05D003003 ORTHO05D008343 2.3e-06 57.0 72 38.9
CSS0014362 Camellia sinensis var. sinensis HOM05D003003 ORTHO05D008343 3.0e-06 56.6 72 37.5
Medtr7g073990 Medicago truncatula HOM05D003003 ORTHO05D008343 3.0e-06 56.6 71 39.4
Prupe.6G297300 Prunus persica HOM05D003003 ORTHO05D008343 3.0e-06 56.6 72 37.5
TPR.G24287 Trifolium pratense HOM05D003003 ORTHO05D008343 3.0e-06 56.6 71 39.4
unitig_27.g24893 Utricularia gibba HOM05D003003 ORTHO05D008343 3.0e-06 56.6 72 41.7
GSVIVG01029873001 Vitis vinifera HOM05D003003 ORTHO05D008343 3.0e-06 56.6 72 38.9
Ciclev10012371m.g Citrus clementina HOM05D003003 ORTHO05D008343 3.9e-06 56.2 71 38.0
Lj1g0019401 Lotus japonicus HOM05D003003 ORTHO05D008343 3.9e-06 56.2 72 38.9
PRCOL_00002630 Prasinoderma coloniale HOM05D003003 ORTHO05D009387 3.9e-06 56.2 93 31.2
Rhsim05G0233000 Rhododendron simsii HOM05D003003 ORTHO05D008343 3.9e-06 56.2 72 37.5
SEGI_32854 Sequoiadendron giganteum HOM05D003003 ORTHO05D008343 3.9e-06 56.2 120 30.8
CDE06G1541 Ceratophyllum demersum HOM05D003003 ORTHO05D008343 5.1e-06 55.8 71 39.4
Lj2A56T95 Lonicera japonica HOM05D003003 ORTHO05D008343 5.1e-06 55.8 72 37.5
vmacro20392 Vaccinium macrocarpon HOM05D003003 ORTHO05D008343 5.1e-06 55.8 72 36.1
CDE04G1691 Ceratophyllum demersum HOM05D000172 ORTHO05D000273 6.7e-06 55.5 82 45.1
Hma1.2p1_0174F.1_g076680 Hydrangea macrophylla HOM05D003003 ORTHO05D008343 6.7e-06 55.5 72 37.5
Thecc.04G148400 Theobroma cacao HOM05D003003 ORTHO05D008343 6.7e-06 55.5 72 37.5
ATR1127G143 Amborella trichopoda HOM05D003003 ORTHO05D008343 8.7e-06 55.1 71 38.0
Nn2g10236 Nelumbo nucifera HOM05D003003 ORTHO05D008343 8.7e-06 55.1 71 39.4


User provided reference genes

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