Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1127G223 Amborella trichopoda HOM05D006472 ORTHO05D008222 0.0e+00 1318.1 675 100.0
Nn5g26767 Nelumbo nucifera HOM05D006472 ORTHO05D008222 4.3e-268 927.9 725 66.8
GSVIVG01024525001 Vitis vinifera HOM05D006472 ORTHO05D008222 2.0e-265 919.1 724 65.7
CDE07G0456 Ceratophyllum demersum HOM05D006472 ORTHO05D008222 3.0e-261 905.2 725 64.7
TAR369G0765 Trochodendron aralioides HOM05D006472 ORTHO05D008222 5.1e-261 904.4 721 64.9
CSS0014639 Camellia sinensis var. sinensis HOM05D006472 ORTHO05D008222 3.0e-253 878.6 713 63.3
PSO384G2469 Papaver somniferum HOM05D006472 ORTHO05D008222 6.7e-253 877.5 710 63.8
Actinidia34511 Actinidia chinensis HOM05D006472 ORTHO05D008222 2.8e-251 872.1 725 62.9
PSO339G5368 Papaver somniferum HOM05D006472 ORTHO05D008222 4.8e-251 871.3 710 63.4
Dinv28760 Davidia involucrata HOM05D006472 ORTHO05D008222 1.8e-250 869.4 706 63.6
QL01p023614 Quercus lobata HOM05D006472 ORTHO05D008222 2.6e-249 865.5 726 62.5
MELO3C013696.2 Cucumis melo HOM05D006472 ORTHO05D008222 8.5e-248 860.5 722 63.3
Ah.09g233500 Amaranthus hybridus HOM05D006472 ORTHO05D008222 1.4e-247 859.8 682 63.6
Cfa011860 Carpinus fangiana HOM05D006472 ORTHO05D008222 3.2e-247 858.6 728 61.5
EL10Ac8g20566 Beta vulgaris HOM05D006472 ORTHO05D008222 1.8e-245 852.8 724 60.6
CANSAT54G2825 Cannabis sativa HOM05D006472 ORTHO05D008222 3.0e-245 852.0 728 60.7
vmacro14657 Vaccinium macrocarpon HOM05D006472 ORTHO05D008222 8.8e-245 850.5 712 61.2
Glyma.02G238400 Glycine max HOM05D006472 ORTHO05D008222 3.3e-244 848.6 724 61.3
Phvul.008G243600 Phaseolus vulgaris HOM05D006472 ORTHO05D008222 9.7e-244 847.0 724 61.3
Glyma.14G207300 Glycine max HOM05D006472 ORTHO05D008222 1.7e-243 846.3 724 61.0
CiPaw.13G059900 Carya illinoinensis HOM05D006472 ORTHO05D008222 3.7e-243 845.1 727 61.5
Aqoxy2G00669 Aquilegia oxysepala HOM05D006472 ORTHO05D008222 1.8e-242 842.8 722 60.2
Prupe.6G038300 Prunus persica HOM05D006472 ORTHO05D008222 3.1e-242 842.0 724 61.2
Hma1.2p1_0170F.1_g075410 Hydrangea macrophylla HOM05D006472 ORTHO05D008222 1.2e-241 840.1 725 61.2
VMungo0647G2416 Vigna mungo HOM05D006472 ORTHO05D008222 3.4e-241 838.6 727 60.8
Lalb_Chr10g0103951 Lupinus albus HOM05D006472 ORTHO05D008222 6.5e-240 834.3 725 60.7
Ca_05732_v3 Cicer arietinum L. HOM05D006472 ORTHO05D008222 1.1e-239 833.6 724 60.2
Rhsim01G0245200 Rhododendron simsii HOM05D006472 ORTHO05D008222 5.5e-239 831.2 781 56.7
LjContig00141g0008115 Lotus japonicus HOM05D006472 ORTHO05D008222 2.3e-237 825.9 712 60.8
Manes.18G123800 Manihot esculenta HOM05D006472 ORTHO05D008222 3.9e-237 825.1 726 60.5
Potri.019G133000 Populus trichocarpa HOM05D006472 ORTHO05D008222 5.1e-237 824.7 726 59.9
MD03G1047100 Malus domestica HOM05D006472 ORTHO05D008222 8.8e-237 823.9 724 60.2
Medtr5g075970 Medicago truncatula HOM05D006472 ORTHO05D008222 4.4e-236 821.6 732 59.2
HanXRQChr11g0338241 Helianthus annuus HOM05D006472 ORTHO05D008222 2.2e-235 819.3 712 59.7
Sabra19G0129200 Salix brachista HOM05D006472 ORTHO05D008222 2.8e-235 818.9 736 59.2
Gohir.D03G146000 Gossypium hirsutum HOM05D006472 ORTHO05D008222 4.8e-235 818.1 691 60.6
Gohir.A03G022700 Gossypium hirsutum HOM05D006472 ORTHO05D008222 8.2e-235 817.4 688 61.2
AUR62039472 Chenopodium quinoa HOM05D006472 ORTHO05D008222 1.1e-234 817.0 724 59.7
Eucgr.J01848 Eucalyptus grandis HOM05D006472 ORTHO05D008222 2.4e-234 815.8 727 59.0
FvH4_3g41130 Fragaria vesca HOM05D006472 ORTHO05D008222 2.0e-233 812.8 701 60.6
RcHm_v2.0_Chr5g0073921 Rosa chinensis HOM05D006472 ORTHO05D008222 4.5e-233 811.6 729 59.3
FAN11G3159 Fragaria x ananassa HOM05D006472 ORTHO05D008222 7.7e-233 810.8 701 60.5
Solyc09g055340.4 Solanum lycopersicum HOM05D006472 ORTHO05D008222 7.7e-233 810.8 721 58.9
Lsat_1_v5_gn_5_176920 Lactuca sativa HOM05D006472 ORTHO05D008222 1.3e-232 810.1 721 58.3
Sopen09g017740 Solanum pennellii HOM05D006472 ORTHO05D008222 1.3e-232 810.1 708 59.5
FAN21G1719 Fragaria x ananassa HOM05D006472 ORTHO05D008222 2.2e-232 809.3 701 60.3
TPR.G15403 Trifolium pratense HOM05D006472 ORTHO05D008222 2.2e-232 809.3 719 59.7
PGR119G0508 Punica granatum HOM05D006472 ORTHO05D008222 6.5e-232 807.7 697 60.7
ECA248G1121 Erigeron canadensis HOM05D006472 ORTHO05D008222 8.5e-232 807.4 723 57.8
Thecc.09G366100 Theobroma cacao HOM05D006472 ORTHO05D008222 8.5e-232 807.4 730 58.2
FAN16G1417 Fragaria x ananassa HOM05D006472 ORTHO05D008222 1.1e-231 807.0 701 60.2
Migut.N00711 Erythranthe guttata HOM05D006472 ORTHO05D008222 4.2e-231 805.1 678 59.9
Lj2C1106G3 Lonicera japonica HOM05D006472 ORTHO05D008222 9.4e-231 803.9 724 58.7
Haze_24495 Corylus avellana HOM05D006472 ORTHO05D008222 2.1e-230 802.7 836 53.1
TWI31G0750 Tripterygium wilfordii HOM05D006472 ORTHO05D008222 1.0e-229 800.4 720 58.5
Atru.chr10.2355 Acer truncatum HOM05D006472 ORTHO05D008222 2.3e-229 799.3 724 58.3
Psat2g049480 Pisum sativum HOM05D006472 ORTHO05D008222 2.8e-227 792.3 727 57.4
Sed0004215 Sechium edule HOM05D006472 ORTHO05D008222 1.0e-221 773.9 621 64.1
FAN25G3237 Fragaria x ananassa HOM05D006472 ORTHO05D008222 1.4e-221 773.5 701 58.6
Sc11g0008920 Simmondsia chinensis HOM05D006472 ORTHO05D008222 3.5e-217 758.8 653 61.7
HPP92_024263 Vanilla planifolia HOM05D006472 ORTHO05D008222 3.8e-216 755.4 718 56.0
HPP92_024257 Vanilla planifolia HOM05D006472 ORTHO05D008222 6.5e-216 754.6 718 56.0
SGA_v2.0_scaffold120G33005 Striga asiatica HOM05D006472 ORTHO05D008222 8.5e-216 754.2 734 54.6
THA.LOC104798389 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 8.5e-216 754.2 727 53.8
COL.COLO4_08158 Corchorus olitorius HOM05D006472 ORTHO05D008222 3.2e-215 752.3 733 55.0
Duzib168G0790 Durio zibethinus HOM05D006472 ORTHO05D008222 4.0e-213 745.3 729 55.0
arahy.Tifrunner.gnm1.ann1.LP7W2Z Arachis hypogaea HOM05D006472 ORTHO05D008222 1.8e-210 736.5 721 55.5
Aa31LG3G7830 Aethionema arabicum HOM05D006472 ORTHO05D008222 3.4e-204 715.7 698 52.9
Medtr6g049450 Medicago truncatula HOM05D006472 ORTHO05D008222 7.5e-204 714.5 611 60.2
Sp6g13540 Schrenkiella parvula HOM05D006472 ORTHO05D008222 1.7e-203 713.4 725 51.6
AL8G25600 Arabidopsis lyrata HOM05D006472 ORTHO05D008222 1.8e-202 709.9 709 52.2
AT5G51340 Arabidopsis thaliana HOM05D006472 ORTHO05D008222 1.8e-202 709.9 710 52.1
arahy.Tifrunner.gnm1.ann1.9899SL Arachis hypogaea HOM05D006472 ORTHO05D008222 5.4e-202 708.4 721 54.1
A10p09080 Brassica napus HOM05D006472 ORTHO05D008222 1.6e-201 706.8 698 52.1
Carub.0008s1136 Capsella rubella HOM05D006472 ORTHO05D008222 2.0e-201 706.4 708 51.8
BraA10t42993Z Brassica rapa HOM05D006472 ORTHO05D008222 4.6e-201 705.3 698 52.0
BcaB08g35491 Brassica carinata HOM05D006472 ORTHO05D008222 5.9e-201 704.9 698 51.9
BcaC04g20686 Brassica carinata HOM05D006472 ORTHO05D008222 1.0e-200 704.1 697 51.9
C09p40600 Brassica napus HOM05D006472 ORTHO05D008222 1.0e-200 704.1 697 51.9
BolC9t56942H Brassica oleracea HOM05D006472 ORTHO05D008222 1.0e-200 704.1 697 51.9
Thhalv10012792m.g Eutrema salsugineum HOM05D006472 ORTHO05D008222 1.2e-198 697.2 725 51.0
SMO119G0519 Selaginella moellendorffii HOM05D006472 ORTHO05D008222 5.6e-191 671.8 663 54.0
Pp3c10_12710 Physcomitrium patens HOM05D006472 ORTHO05D008222 2.1e-190 669.8 661 52.8
Mapoly0020s0144 Marchantia polymorpha HOM05D006472 ORTHO05D008222 4.4e-188 662.1 658 54.0
Pp3c26_4960 Physcomitrium patens HOM05D006472 ORTHO05D008222 1.1e-186 657.5 659 52.2
Zm00001eb193950 Zea mays HOM05D006472 ORTHO05D008222 2.3e-181 639.8 728 50.3
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 1.3e-166 590.9 622 52.6
DCAR_012719 Daucus carota HOM05D006472 ORTHO05D008222 6.0e-161 572.0 589 53.0
AagrBONN_evm.TU.Sc2ySwM_117.3516 Anthoceros agrestis HOM05D006472 ORTHO05D008222 5.5e-154 548.9 641 46.8
Ciclev10000965m.g Citrus clementina HOM05D006472 ORTHO05D008222 2.5e-151 540.0 479 57.0
CsaV3_3G000010 Cucumis sativus L. HOM05D006472 ORTHO05D008222 3.7e-150 536.2 402 70.1
CBR_g46787 Chara braunii HOM05D006472 ORTHO05D008222 7.9e-145 518.5 608 46.1
Oeu034746.1 Olea europaea HOM05D006472 ORTHO05D008222 1.1e-141 508.1 390 66.2
Nitab4.5_0002030g0020 Nicotiana tabacum HOM05D006472 ORTHO05D008222 6.5e-131 472.2 600 45.5
Os04g0347600 Oryza sativa ssp. japonica HOM05D006472 ORTHO05D008222 5.9e-116 422.5 344 64.2
Peaxi162Scf00293g00816 Petunia axillaris HOM05D006472 ORTHO05D008222 1.3e-115 421.4 425 53.9
AUR62041830 Chenopodium quinoa HOM05D006472 ORTHO05D008222 1.6e-113 414.5 506 46.6
THA.LOC104824615 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 1.8e-112 411.0 429 48.7
Nn5g26768 Nelumbo nucifera HOM05D006472 ORTHO05D008222 1.8e-104 384.4 232 82.3
ClCG10G000010 Citrullus lanatus HOM05D006472 ORTHO05D008222 1.1e-98 365.2 327 62.4
ClCG10G000020 Citrullus lanatus HOM05D006472 ORTHO05D008222 2.8e-97 360.5 376 52.7
Cc01_g15530 Coffea canephora HOM05D006472 ORTHO05D008222 6.8e-96 355.9 254 65.7
THA.LOC104824654 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 2.2e-94 350.9 391 46.3
Cpa.g.sc2.261 Carica papaya HOM05D006472 ORTHO05D008222 5.9e-92 342.8 316 58.5
Cc01_g15520 Coffea canephora HOM05D006472 ORTHO05D008222 1.6e-89 334.7 257 67.3
SHI30108 Sapria himalayana HOM05D006714 ORTHO05D008103 4.7e-89 333.2 550 38.7
Nitab4.5_0000195g0150 Nicotiana tabacum HOM05D006472 ORTHO05D008222 2.6e-87 327.4 476 41.8
CARHR264090 Cardamine hirsuta HOM05D006472 ORTHO05D008222 4.6e-84 316.6 300 56.7
Cpa.g.sc2.260 Carica papaya HOM05D006472 ORTHO05D008222 8.6e-83 312.4 391 45.8
Ciclev10004061m.g Citrus clementina HOM05D006472 ORTHO05D008222 1.9e-50 204.9 157 68.8
SEGI_25118 Sequoiadendron giganteum HOM05D006472 ORTHO05D008222 4.8e-49 200.3 135 68.9
Atru.chr10.2358 Acer truncatum HOM05D006472 ORTHO05D008222 1.4e-45 188.7 245 42.0
Gorai.003G153200 Gossypium raimondii HOM05D006472 ORTHO05D008222 2.4e-40 171.4 161 59.0
Nitab4.5_0001025g0010 Nicotiana tabacum HOM05D006472 ORTHO05D008222 5.3e-40 170.2 203 43.3
MCO15G146 Micromonas commoda HOM05D006472 ORTHO05D008222 1.6e-36 158.7 718 25.3
SEGI_41332 Sequoiadendron giganteum HOM05D006472 ORTHO05D008222 2.5e-21 108.2 71 76.1
Haze_06065 Corylus avellana HOM05D000100 ORTHO05D000052 1.4e-19 102.4 96 51.0
Lsat_1_v5_gn_5_131141 Lactuca sativa HOM05D006472 ORTHO05D008222 5.9e-15 87.0 69 60.9
Peaxi162Scf00293g00815 Petunia axillaris HOM05D006472 ORTHO05D008222 7.7e-15 86.7 108 50.0
Cre12.g532650 Chlamydomonas reinhardtii HOM05D006472 ORTHO05D008222 7.9e-12 76.6 498 23.1
Medtr5g078560 Medicago truncatula HOM05D006472 ORTHO05D008222 3.4e-07 61.2 45 60.0


User provided reference genes

Program Settings