Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1127G216 Amborella trichopoda HOM05D004172 ORTHO05D006010 0.0e+00 1110.9 586 100.0
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 1.2e-229 800.0 568 76.4
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 1.0e-225 786.9 567 74.4
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 2.5e-224 782.3 569 73.5
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 4.3e-224 781.6 571 73.0
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 1.3e-223 780.0 571 73.2
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 1.3e-220 770.0 570 72.3
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 2.9e-220 768.8 570 72.8
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 5.0e-220 768.1 570 72.8
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 5.0e-220 768.1 570 72.5
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 8.5e-220 767.3 562 73.7
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 4.2e-219 765.0 573 71.2
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 9.4e-219 763.8 566 71.4
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 1.2e-218 763.5 571 71.5
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 4.6e-218 761.5 567 72.5
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 1.8e-217 759.6 568 71.8
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 3.9e-217 758.4 571 70.6
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 5.1e-217 758.1 564 71.6
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 8.8e-217 757.3 584 70.5
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 1.1e-216 756.9 572 71.3
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 1.5e-216 756.5 564 71.6
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 2.0e-216 756.1 575 71.0
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 2.6e-216 755.7 578 70.8
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 4.4e-216 755.0 565 69.9
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 4.4e-216 755.0 566 71.6
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 5.7e-216 754.6 544 75.7
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 2.2e-215 752.7 566 70.8
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 2.8e-215 752.3 566 71.0
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 3.7e-215 751.9 571 71.3
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 6.3e-215 751.1 564 71.3
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 6.3e-215 751.1 571 70.6
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 8.2e-215 750.7 566 71.0
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 1.1e-214 750.4 564 71.8
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 1.8e-214 749.6 581 70.7
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 2.4e-214 749.2 565 70.1
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 3.1e-214 748.8 573 69.3
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 6.9e-214 747.7 560 71.2
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 6.9e-214 747.7 566 70.7
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 9.1e-214 747.3 571 71.1
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 1.2e-213 746.9 576 70.1
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 2.0e-213 746.1 564 71.3
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 2.0e-213 746.1 567 71.3
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 2.6e-213 745.7 573 70.2
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 5.9e-213 744.6 571 69.0
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 1.0e-212 743.8 575 68.3
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 1.3e-212 743.4 570 69.1
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 1.3e-212 743.4 566 69.3
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 1.7e-212 743.0 565 70.4
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 2.2e-212 742.7 565 70.8
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 2.2e-212 742.7 572 69.8
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 2.9e-212 742.3 570 70.0
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 2.9e-212 742.3 574 69.9
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 2.9e-212 742.3 564 70.0
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 3.8e-212 741.9 572 70.3
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 5.0e-212 741.5 575 68.3
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 8.5e-212 740.7 561 70.2
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 8.5e-212 740.7 565 70.3
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 8.5e-212 740.7 578 68.3
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 8.5e-212 740.7 566 69.3
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 1.1e-211 740.3 561 70.6
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 1.1e-211 740.3 562 70.5
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 1.1e-211 740.3 573 70.5
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 1.4e-211 740.0 571 69.5
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 1.4e-211 740.0 572 68.9
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 1.9e-211 739.6 567 70.2
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 2.5e-211 739.2 560 70.2
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 2.5e-211 739.2 575 69.4
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 4.2e-211 738.4 561 70.4
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 4.2e-211 738.4 582 68.6
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 4.2e-211 738.4 560 70.2
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 5.5e-211 738.0 575 69.6
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 7.2e-211 737.6 561 70.2
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 9.4e-211 737.3 560 70.2
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 1.2e-210 736.9 577 68.5
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 1.2e-210 736.9 560 69.8
CDE09G1233 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 2.7e-210 735.7 564 69.3
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 3.6e-210 735.3 575 69.2
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 4.7e-210 734.9 578 69.0
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 4.7e-210 734.9 560 69.6
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 4.7e-210 734.9 560 70.0
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 1.0e-209 733.8 578 69.2
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 1.0e-209 733.8 561 70.4
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 1.8e-209 733.0 571 69.9
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 2.3e-209 732.6 583 68.8
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 2.3e-209 732.6 570 68.9
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 3.0e-209 732.3 578 68.2
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 5.2e-209 731.5 572 68.7
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 1.5e-208 729.9 573 69.5
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 1.5e-208 729.9 572 68.2
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 2.6e-208 729.2 571 69.4
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 3.3e-208 728.8 571 69.2
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 3.3e-208 728.8 572 68.5
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 6.3e-207 724.5 563 68.9
TAR636G0443 Trochodendron aralioides HOM05D004172 ORTHO05D006010 3.1e-206 722.2 563 69.6
PSO502G0022 Papaver somniferum HOM05D004172 ORTHO05D006010 4.1e-206 721.8 571 69.0
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 4.1e-206 721.8 615 64.6
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 5.3e-206 721.5 563 70.3
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 9.1e-206 720.7 592 66.6
GSVIVG01029868001 Vitis vinifera HOM05D004172 ORTHO05D006010 1.2e-205 720.3 509 73.1
HPP92_026424 Vanilla planifolia HOM05D004172 ORTHO05D006010 7.7e-205 717.6 585 66.7
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 8.5e-204 714.1 569 67.3
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 1.5e-203 713.4 565 68.7
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 2.7e-202 709.1 525 71.8
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 3.6e-202 708.8 565 66.9
Os05g0316100 Oryza sativa ssp. japonica HOM05D004172 ORTHO05D006010 4.7e-202 708.4 527 71.0
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.0e-201 707.2 570 68.1
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 5.2e-201 704.9 568 66.5
DCAR_029461 Daucus carota HOM05D004172 ORTHO05D006010 1.5e-200 703.4 568 67.8
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 2.6e-200 702.6 564 66.1
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 3.3e-200 702.2 566 66.8
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 7.5e-200 701.0 568 66.5
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 9.7e-200 700.7 666 59.6
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 2.8e-199 699.1 675 58.8
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 1.1e-198 697.2 593 64.6
Cc02_g28240 Coffea canephora HOM05D004172 ORTHO05D006010 3.1e-198 695.7 510 71.2
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 1.6e-197 693.3 566 65.2
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 2.6e-192 676.0 542 68.8
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 5.2e-185 651.7 556 62.4
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 4.4e-184 648.7 584 62.8
SEGI_23896 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 2.5e-179 632.9 481 70.1
CDE08G0114 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 1.6e-173 613.6 450 72.2
unitig_747.g21293 Utricularia gibba HOM05D004172 ORTHO05D006010 2.0e-168 596.7 486 67.3
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 1.3e-167 594.0 572 58.7
SMO337G0001 Selaginella moellendorffii HOM05D004172 ORTHO05D006010 8.6e-164 581.3 526 62.2
HanXRQChr01g0016071 Helianthus annuus HOM05D004172 ORTHO05D006010 1.7e-159 567.0 433 71.6
Pp3c6_18720 Physcomitrium patens HOM05D004172 ORTHO05D006010 1.8e-145 520.4 518 54.4
vmacro08954 Vaccinium macrocarpon HOM05D004172 ORTHO05D006010 3.4e-144 516.2 506 59.9
C03p44040 Brassica napus HOM05D004172 ORTHO05D006010 1.7e-143 513.8 365 75.1
BraA01t04334Z Brassica rapa HOM05D004172 ORTHO05D006010 2.4e-129 466.8 370 67.3
SGA_v2.0_scaffold5G02963 Striga asiatica HOM05D004172 ORTHO05D006010 1.3e-124 451.1 298 79.2
CiPaw.09G223100 Carya illinoinensis HOM05D004172 ORTHO05D006010 4.2e-118 429.5 558 50.7
Mapoly0092s0078 Marchantia polymorpha HOM05D004172 ORTHO05D006010 1.1e-110 404.8 508 48.4
COL.COLO4_05675 Corchorus olitorius HOM05D004172 ORTHO05D006010 3.6e-109 399.8 252 80.6
Actinidia32576 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.4e-102 377.9 398 56.0
CBR_g164 Chara braunii HOM05D004172 ORTHO05D006010 2.3e-100 370.5 557 43.1
CSS0016172 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 1.8e-97 360.9 311 64.3
BcaB04g18578 Brassica carinata HOM05D004172 ORTHO05D006010 4.8e-90 336.3 227 74.9
SEGI_22351 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 2.0e-80 304.3 192 81.2
Actinidia28546 Actinidia chinensis HOM05D004172 ORTHO05D006010 2.8e-66 257.3 238 61.3
MCO09G526 Micromonas commoda HOM05D004172 ORTHO05D006010 2.0e-64 251.1 246 54.5
Cre06.g281900 Chlamydomonas reinhardtii HOM05D004172 ORTHO05D006010 8.3e-58 229.2 320 42.8
C03p44050 Brassica napus HOM05D004172 ORTHO05D006010 2.4e-57 227.6 208 59.6
PRCOL_00003523 Prasinoderma coloniale HOM05D004172 ORTHO05D006010 2.3e-47 194.5 307 42.0
Medtr3g094870 Medicago truncatula HOM05D004172 ORTHO05D006010 3.9e-47 193.7 114 83.3
CSS0001306 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D000002 1.7e-34 151.8 127 63.0
HanXRQChr04g0127351 Helianthus annuus HOM05D004172 ORTHO05D006010 1.0e-31 142.5 133 59.4
SEGI_04146 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 8.1e-21 106.3 206 39.3
C02p50100 Brassica napus HOM05D004172 ORTHO05D018193 2.7e-16 91.3 52 86.5
BolC2t11086H Brassica oleracea HOM05D004172 ORTHO05D018193 2.7e-16 91.3 52 86.5
RcHm_v2.0_Chr3g0459981 Rosa chinensis HOM05D004172 ORTHO05D018193 3.5e-16 90.9 86 60.5
Actinidia32575 Actinidia chinensis HOM05D004172 ORTHO05D006010 7.9e-16 89.7 50 76.0
RcHm_v2.0_Chr3g0460031 Rosa chinensis HOM05D004172 ORTHO05D018193 3.3e-14 84.3 84 56.0
HanXRQChr11g0335241 Helianthus annuus HOM05D004172 ORTHO05D006010 4.3e-14 84.0 61 72.1
SEGI_20309 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 2.6e-11 74.7 60 65.0
BcaC02g10326 Brassica carinata HOM05D004172 ORTHO05D023965 4.9e-10 70.5 81 51.9
QL07p004777 Quercus lobata HOM05D004172 ORTHO05D039478 4.9e-10 70.5 129 39.5
TAR633G1452 Trochodendron aralioides HOM05D004172 ORTHO05D414170 1.6e-08 65.5 57 54.4
C03p65240 Brassica napus HOM05D004172 ORTHO05D018193 7.9e-08 63.2 30 90.0
BolC3t18777H Brassica oleracea HOM05D004172 ORTHO05D018193 7.9e-08 63.2 30 90.0
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 1.5e-06 58.9 242 29.3


User provided reference genes

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