Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1127G135 Amborella trichopoda HOM05D007120 ORTHO05D008881 3.1e-26 120.9 57 100.0
MBI15_g39383_MAGBIO Magnolia biondii HOM05D007120 ORTHO05D008881 5.9e-17 90.1 57 75.4
Nn2g10275 Nelumbo nucifera HOM05D007120 ORTHO05D008881 1.2e-14 82.4 55 67.3
Gohir.D13G008000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 6.1e-14 80.1 56 62.5
Gorai.013G008400 Gossypium raimondii HOM05D007120 ORTHO05D008881 1.4e-13 79.0 55 61.8
Nn5g26831 Nelumbo nucifera HOM05D007120 ORTHO05D008881 2.3e-13 78.2 56 62.5
Haze_17366 Corylus avellana HOM05D006907 ORTHO05D008598 3.0e-13 77.8 54 61.1
MD07G1234900 Malus domestica HOM05D007120 ORTHO05D008881 3.9e-13 77.4 55 54.5
MD01G1169000 Malus domestica HOM05D007120 ORTHO05D008881 5.1e-13 77.0 55 54.5
Thecc.10G184500 Theobroma cacao HOM05D007120 ORTHO05D008881 5.1e-13 77.0 56 58.9
CANSAT56G4069 Cannabis sativa HOM05D007120 ORTHO05D008881 6.7e-13 76.6 55 58.2
TAR369G0939 Trochodendron aralioides HOM05D007120 ORTHO05D008881 6.7e-13 76.6 55 63.6
Gohir.A13G007800 Gossypium hirsutum HOM05D007120 ORTHO05D008881 8.8e-13 76.3 56 57.1
Gohir.A06G180100 Gossypium hirsutum HOM05D007120 ORTHO05D008881 1.9e-12 75.1 56 58.9
Gohir.D06G187000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 1.9e-12 75.1 56 58.9
Gorai.010G219300 Gossypium raimondii HOM05D007120 ORTHO05D008881 1.9e-12 75.1 56 58.9
Os07g0680300 Oryza sativa ssp. japonica HOM05D007120 ORTHO05D008881 2.5e-12 74.7 54 61.1
Cfa001199 Carpinus fangiana HOM05D007120 ORTHO05D008881 7.4e-12 73.2 49 63.3
Manes.10G002800 Manihot esculenta HOM05D007120 ORTHO05D008881 7.4e-12 73.2 56 57.1
Duzib128G0262 Durio zibethinus HOM05D007120 ORTHO05D008881 9.7e-12 72.8 56 58.9
Manes.07G142200 Manihot esculenta HOM05D007120 ORTHO05D008881 9.7e-12 72.8 55 54.5
Aqoxy4G03269 Aquilegia oxysepala HOM05D007120 ORTHO05D008881 2.8e-11 71.2 56 58.9
MSTRG.27254 Avicennia marina HOM05D007120 ORTHO05D008881 2.8e-11 71.2 51 64.7
HanXRQChr02g0048061 Helianthus annuus HOM05D007120 ORTHO05D008881 3.7e-11 70.9 54 51.9
Lsat_1_v5_gn_6_11060 Lactuca sativa HOM05D007120 ORTHO05D008881 3.7e-11 70.9 55 56.4
Carub.0004s2306 Capsella rubella HOM05D007120 ORTHO05D008881 8.2e-11 69.7 54 55.6
Cc02_g05250 Coffea canephora HOM05D007120 ORTHO05D008881 8.2e-11 69.7 54 59.3
Lj1A968T57 Lonicera japonica HOM05D007120 ORTHO05D008881 8.2e-11 69.7 51 56.9
Potri.019G059500 Populus trichocarpa HOM05D007120 ORTHO05D008881 1.1e-10 69.3 50 58.0
Prupe.2G265200 Prunus persica HOM05D007120 ORTHO05D008881 1.1e-10 69.3 55 52.7
Peaxi162Scf00073g02342 Petunia axillaris HOM05D007120 ORTHO05D008881 1.8e-10 68.6 54 51.9
Nitab4.5_0000171g0210 Nicotiana tabacum HOM05D007120 ORTHO05D008881 2.4e-10 68.2 51 56.9
RcHm_v2.0_Chr1g0372461 Rosa chinensis HOM05D007120 ORTHO05D008881 2.4e-10 68.2 55 49.1
PGSC0003DMG400020601 Solanum tuberosum HOM05D007120 ORTHO05D008881 2.4e-10 68.2 54 53.7
AL4G38650 Arabidopsis lyrata HOM05D007120 ORTHO05D008881 3.1e-10 67.8 54 55.6
AT2G40765 Arabidopsis thaliana HOM05D007120 ORTHO05D008881 3.1e-10 67.8 54 55.6
CSS0015321 Camellia sinensis var. sinensis HOM05D007120 ORTHO05D008881 3.1e-10 67.8 54 57.4
Oeu006064.1 Olea europaea HOM05D007120 ORTHO05D008881 3.1e-10 67.8 44 61.4
BcaB01g03516 Brassica carinata HOM05D007120 ORTHO05D008881 4.1e-10 67.4 52 57.7
A03p22930 Brassica napus HOM05D007120 ORTHO05D008881 4.1e-10 67.4 52 57.7
BolC3t15101H Brassica oleracea HOM05D007120 ORTHO05D008881 4.1e-10 67.4 52 57.7
BraA03t11516Z Brassica rapa HOM05D007120 ORTHO05D008881 4.1e-10 67.4 52 57.7
HanXRQChr10g0312991 Helianthus annuus HOM05D007120 ORTHO05D008881 4.1e-10 67.4 55 52.7
RcHm_v2.0_Chr7g0235281 Rosa chinensis HOM05D007120 ORTHO05D008881 4.1e-10 67.4 55 49.1
RcHm_v2.0_Chr7g0235311 Rosa chinensis HOM05D007120 ORTHO05D008881 4.1e-10 67.4 55 49.1
CARHR135860 Cardamine hirsuta HOM05D007120 ORTHO05D008881 5.3e-10 67.0 54 55.6
Solyc03g095730.4 Solanum lycopersicum HOM05D007120 ORTHO05D008881 5.3e-10 67.0 54 53.7
FvH4_7g26050 Fragaria vesca HOM05D007120 ORTHO05D008881 1.2e-09 65.9 56 50.0
FAN10G2835 Fragaria x ananassa HOM05D007120 ORTHO05D008881 1.2e-09 65.9 56 50.0
Hma1.2p1_0264F.1_g105975 Hydrangea macrophylla HOM05D007120 ORTHO05D008881 1.2e-09 65.9 56 55.4
Hma1.2p1_1805F.1_g303200 Hydrangea macrophylla HOM05D007120 ORTHO05D008881 1.2e-09 65.9 56 55.4
CBR_g11002 Chara braunii HOM05D007120 ORTHO05D008881 1.5e-09 65.5 50 50.0
Dinv34497 Davidia involucrata HOM05D006907 ORTHO05D008598 1.5e-09 65.5 47 63.8
C04p68540 Brassica napus HOM05D007120 ORTHO05D008881 2.6e-09 64.7 49 57.1
BolC4t28353H Brassica oleracea HOM05D007120 ORTHO05D008881 2.6e-09 64.7 49 57.1
CiPaw.14G049800 Carya illinoinensis HOM05D007120 ORTHO05D008881 2.6e-09 64.7 50 50.0
Sp4g23080 Schrenkiella parvula HOM05D007120 ORTHO05D008881 2.6e-09 64.7 54 55.6
Hund13439 Selenicereus undatus HOM05D007120 ORTHO05D008881 2.6e-09 64.7 57 50.9
A04p31140 Brassica napus HOM05D007120 ORTHO05D008881 3.4e-09 64.3 49 57.1
BraA04t18569Z Brassica rapa HOM05D007120 ORTHO05D008881 3.4e-09 64.3 49 57.1
CAN.G1229.12 Capsicum annuum HOM05D007120 ORTHO05D008881 3.4e-09 64.3 54 51.9
Cfa011840 Carpinus fangiana HOM05D007120 ORTHO05D008881 3.4e-09 64.3 56 53.6
FAN03G2745 Fragaria x ananassa HOM05D007120 ORTHO05D008881 3.4e-09 64.3 56 48.2
Thhalv10017507m.g Eutrema salsugineum HOM05D007120 ORTHO05D008881 5.9e-09 63.5 49 53.1
Nitab4.5_0000375g0220 Nicotiana tabacum HOM05D007120 ORTHO05D008881 5.9e-09 63.5 69 43.5
FAN11G0923 Fragaria x ananassa HOM05D007120 ORTHO05D008881 7.7e-09 63.2 42 59.5
Migut.F00570 Erythranthe guttata HOM05D007120 ORTHO05D008881 1.3e-08 62.4 54 50.0
FAN21G2234 Fragaria x ananassa HOM05D007120 ORTHO05D008881 1.7e-08 62.0 56 48.2
Glyma.06G141900 Glycine max HOM05D007120 ORTHO05D008881 2.2e-08 61.6 48 54.2
MD03G1050700 Malus domestica HOM05D007120 ORTHO05D008881 2.2e-08 61.6 40 57.5
Atru.chr12.199 Acer truncatum HOM05D007120 ORTHO05D008881 2.9e-08 61.2 51 49.0
CiPaw.09G151000 Carya illinoinensis HOM05D007120 ORTHO05D008881 2.9e-08 61.2 51 45.1
Prupe.6G040200 Prunus persica HOM05D007120 ORTHO05D008881 2.9e-08 61.2 54 48.1
GSVIVG01032659001 Vitis vinifera HOM05D007120 ORTHO05D008881 2.9e-08 61.2 49 49.0
BcaC02g12732 Brassica carinata HOM05D007120 ORTHO05D008881 8.5e-08 59.7 44 54.5
A05p01890 Brassica napus HOM05D007120 ORTHO05D008881 8.5e-08 59.7 44 54.5
C04p02230 Brassica napus HOM05D007120 ORTHO05D008881 8.5e-08 59.7 44 54.5
BolC4t21869H Brassica oleracea HOM05D007120 ORTHO05D008881 8.5e-08 59.7 44 54.5
C01p26040 Brassica napus HOM05D007120 ORTHO05D008881 1.1e-07 59.3 44 54.5
Glyma.04G223400 Glycine max HOM05D007120 ORTHO05D008881 1.1e-07 59.3 48 47.9
Phvul.009G043000 Phaseolus vulgaris HOM05D007120 ORTHO05D008881 1.1e-07 59.3 48 50.0
Lj1g0003388 Lotus japonicus HOM05D007120 ORTHO05D008881 1.4e-07 58.9 48 50.0
Lalb_Chr11g0067731 Lupinus albus HOM05D007120 ORTHO05D008881 1.9e-07 58.5 48 47.9
Sed0014987 Sechium edule HOM05D007120 ORTHO05D008881 1.9e-07 58.5 51 51.0
AagrBONN_evm.TU.Sc2ySwM_344.712 Anthoceros agrestis HOM05D007120 ORTHO05D008881 2.5e-07 58.2 50 48.0
DCAR_014662 Daucus carota HOM05D007120 ORTHO05D008881 4.2e-07 57.4 55 49.1
C04p16380 Brassica napus HOM05D007120 ORTHO05D008881 5.5e-07 57.0 36 61.1
Nitab4.5_0012297g0020 Nicotiana tabacum HOM05D007120 ORTHO05D008881 5.5e-07 57.0 40 62.5
FAN01G0895 Fragaria x ananassa HOM05D007120 ORTHO05D008881 9.4e-07 56.2 73 39.7
TAR633G1173 Trochodendron aralioides HOM05D009315 ORTHO05D008839 9.4e-07 56.2 37 70.3
C01p18970 Brassica napus HOM05D007120 ORTHO05D008881 1.2e-06 55.8 47 51.1
Lalb_Chr08g0239241 Lupinus albus HOM05D007120 ORTHO05D008881 1.2e-06 55.8 48 43.8
Lalb_Chr23g0272151 Lupinus albus HOM05D007120 ORTHO05D008881 1.6e-06 55.5 48 45.8
Nitab4.5_0011372g0020 Nicotiana tabacum HOM05D007120 ORTHO05D008881 1.6e-06 55.5 37 62.2
Medtr3g093810 Medicago truncatula HOM05D007120 ORTHO05D008881 3.6e-06 54.3 48 45.8
CsaV3_5G011100 Cucumis sativus L. HOM05D007120 ORTHO05D008881 4.7e-06 53.9 49 49.0


User provided reference genes

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