Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1127G094 Amborella trichopoda HOM05D007281 ORTHO05D009241 2.2e-94 349.7 309 100.0
Actinidia30489 Actinidia chinensis HOM05D007281 ORTHO05D009241 4.9e-25 119.4 159 44.7
MBI03_g06061_MAGBIO Magnolia biondii HOM05D007281 ORTHO05D009241 1.4e-24 117.9 152 44.1
TAR636G0075 Trochodendron aralioides HOM05D007281 ORTHO05D009241 3.2e-24 116.7 161 41.6
Dinv15494 Davidia involucrata HOM05D007281 ORTHO05D009241 9.2e-24 115.2 158 43.0
Hma1.2p1_0565F.1_g179540 Hydrangea macrophylla HOM05D007281 ORTHO05D009241 1.6e-23 114.4 158 42.4
Rhsim04G0063100 Rhododendron simsii HOM05D007281 ORTHO05D009241 7.8e-23 112.1 161 41.0
Lj1P735T42 Lonicera japonica HOM05D007281 ORTHO05D009241 3.9e-22 109.8 161 40.4
Sc06g0009160 Simmondsia chinensis HOM05D007281 ORTHO05D009241 4.3e-21 106.3 160 40.6
TAR633G2446 Trochodendron aralioides HOM05D007281 ORTHO05D009241 4.3e-21 106.3 161 39.1
DCAR_012978 Daucus carota HOM05D007281 ORTHO05D009241 2.8e-20 103.6 161 39.1
CSS0001951 Camellia sinensis var. sinensis HOM05D007281 ORTHO05D009241 6.2e-20 102.4 156 41.7
CSS0030135 Camellia sinensis var. sinensis HOM05D007281 ORTHO05D009241 6.2e-20 102.4 156 41.7
Manes.01G177300 Manihot esculenta HOM05D007281 ORTHO05D009241 8.1e-20 102.1 171 36.3
GSVIVG01020865001 Vitis vinifera HOM05D007281 ORTHO05D009241 1.8e-19 100.9 161 37.9
Nn8g41289 Nelumbo nucifera HOM05D007281 ORTHO05D009241 5.2e-19 99.4 154 39.6
Potri.009G067400 Populus trichocarpa HOM05D007281 ORTHO05D009241 5.2e-19 99.4 144 41.0
Nitab4.5_0002370g0080 Nicotiana tabacum HOM05D007281 ORTHO05D009241 9.9e-18 95.1 160 36.9
Sabra09G0050300 Salix brachista HOM05D007281 ORTHO05D009241 1.3e-17 94.7 144 39.6
PSO384G2432 Papaver somniferum HOM05D007281 ORTHO05D009241 1.7e-17 94.4 151 40.4
Aqoxy1G00179 Aquilegia oxysepala HOM05D007281 ORTHO05D009241 2.2e-17 94.0 161 34.8
Cc05_g06270 Coffea canephora HOM05D007281 ORTHO05D009241 6.4e-17 92.4 150 36.7
Atru.chr6.3074 Acer truncatum HOM05D007281 ORTHO05D009241 1.1e-16 91.7 160 35.0
EL10As1g23104 Beta vulgaris HOM05D007281 ORTHO05D009241 1.1e-16 91.7 160 35.6
Peaxi162Scf00007g02726 Petunia axillaris HOM05D007281 ORTHO05D009241 9.2e-16 88.6 154 37.7
Thecc.02G171700 Theobroma cacao HOM05D007281 ORTHO05D009241 9.2e-16 88.6 157 35.0
Nitab4.5_0001871g0100 Nicotiana tabacum HOM05D007281 ORTHO05D009241 1.6e-15 87.8 163 35.0
Sabra16G0168300 Salix brachista HOM05D007281 ORTHO05D009241 7.8e-15 85.5 133 39.1
CAN.G508.23 Capsicum annuum HOM05D007281 ORTHO05D009241 1.7e-14 84.3 147 38.1
Cfa014545 Carpinus fangiana HOM05D007281 ORTHO05D009241 1.7e-14 84.3 154 37.0
Thhalv10007999m.g Eutrema salsugineum HOM05D007281 ORTHO05D009241 1.7e-14 84.3 158 34.2
Solyc07g054680.3 Solanum lycopersicum HOM05D007281 ORTHO05D009241 5.1e-14 82.8 147 37.4
SGA_v2.0_scaffold70G23463 Striga asiatica HOM05D007281 ORTHO05D009241 5.1e-14 82.8 171 31.0
AL1G23070 Arabidopsis lyrata HOM05D007281 ORTHO05D009241 6.6e-14 82.4 166 33.1
BcaC05g25243 Brassica carinata HOM05D007281 ORTHO05D009241 8.6e-14 82.0 158 31.0
ECA234G1359 Erigeron canadensis HOM05D007281 ORTHO05D009241 8.6e-14 82.0 161 33.5
Carub.0001s1156 Capsella rubella HOM05D007281 ORTHO05D009241 1.1e-13 81.6 159 32.1
TWI36G0005 Tripterygium wilfordii HOM05D007281 ORTHO05D009241 1.1e-13 81.6 152 32.9
CANSAT64G1356 Cannabis sativa HOM05D007281 ORTHO05D009241 1.5e-13 81.3 161 32.3
AUR62041771 Chenopodium quinoa HOM05D007281 ORTHO05D009241 1.5e-13 81.3 160 33.1
PGR042G3246 Punica granatum HOM05D007281 ORTHO05D009241 1.5e-13 81.3 144 36.1
Potri.001G273100 Populus trichocarpa HOM05D007281 ORTHO05D009241 2.5e-13 80.5 148 35.8
Haze_13088 Corylus avellana HOM05D007281 ORTHO05D009241 7.3e-13 79.0 158 36.7
Glyma.13G301000 Glycine max HOM05D007281 ORTHO05D009241 9.6e-13 78.6 161 30.4
Cpa.g.sc116.70 Carica papaya HOM05D007281 ORTHO05D009241 1.6e-12 77.8 137 37.2
A06p09560 Brassica napus HOM05D007281 ORTHO05D009241 4.7e-12 76.3 145 33.8
Gohir.A04G105900 Gossypium hirsutum HOM05D007281 ORTHO05D009241 6.2e-12 75.9 149 31.5
Ah.12g062420 Amaranthus hybridus HOM05D007281 ORTHO05D009241 1.8e-11 74.3 150 33.3
QL03p011182 Quercus lobata HOM05D007281 ORTHO05D009241 1.8e-11 74.3 154 32.5
BraA06t24146Z Brassica rapa HOM05D007281 ORTHO05D009241 2.4e-11 73.9 145 33.8
Sp1g10520 Schrenkiella parvula HOM05D007281 ORTHO05D009241 2.4e-11 73.9 145 33.8
SalBow7G4701 Salvia bowleyana HOM05D007281 ORTHO05D009241 3.1e-11 73.6 154 31.2
MSTRG.13304 Avicennia marina HOM05D007281 ORTHO05D009241 4.0e-11 73.2 156 31.4
Hund01235 Selenicereus undatus HOM05D007281 ORTHO05D009241 4.0e-11 73.2 144 33.3
Hund01238 Selenicereus undatus HOM05D007281 ORTHO05D009241 5.2e-11 72.8 144 33.3
HanXRQChr15g0488101 Helianthus annuus HOM05D007281 ORTHO05D009241 6.9e-11 72.4 160 30.0
Ciclev10016159m.g Citrus clementina HOM05D007281 ORTHO05D009241 8.9e-11 72.0 137 38.0
HPP92_019763 Vanilla planifolia HOM05D007281 ORTHO05D009241 1.2e-10 71.6 140 34.3
Gohir.D04G145700 Gossypium hirsutum HOM05D007281 ORTHO05D009241 1.5e-10 71.2 147 30.6
Gorai.012G131800 Gossypium raimondii HOM05D007281 ORTHO05D009241 1.5e-10 71.2 147 30.6
CiPaw.03G169800 Carya illinoinensis HOM05D007281 ORTHO05D009241 2.6e-10 70.5 133 36.1
C05p11270 Brassica napus HOM05D007281 ORTHO05D009241 3.4e-10 70.1 145 33.8
BolC5t29876H Brassica oleracea HOM05D007281 ORTHO05D009241 3.4e-10 70.1 145 33.8
CARHR012220 Cardamine hirsuta HOM05D007281 ORTHO05D009241 2.2e-09 67.4 160 31.2
PGSC0003DMG400018370 Solanum tuberosum HOM05D007281 ORTHO05D009241 2.2e-09 67.4 132 35.6
Ca_01535_v3 Cicer arietinum L. HOM05D007281 ORTHO05D009241 3.8e-09 66.6 161 32.9
Lj3g0021775 Lotus japonicus HOM05D007281 ORTHO05D009241 3.8e-09 66.6 161 29.8
PSO339G5345 Papaver somniferum HOM05D007281 ORTHO05D009241 8.4e-09 65.5 124 37.9
Eucgr.A01777 Eucalyptus grandis HOM05D007281 ORTHO05D009241 1.4e-08 64.7 98 38.8
Lsat_1_v5_gn_4_69540 Lactuca sativa HOM05D007281 ORTHO05D009241 2.4e-08 63.9 152 27.6
arahy.Tifrunner.gnm1.ann1.HBB9ZN Arachis hypogaea HOM05D001233 ORTHO05D009241 4.2e-08 63.2 159 27.7
arahy.Tifrunner.gnm1.ann1.JM9TK1 Arachis hypogaea HOM05D007281 ORTHO05D009241 9.3e-08 62.0 160 27.5
CsaV3_1G014130 Cucumis sativus L. HOM05D007281 ORTHO05D009241 9.3e-08 62.0 156 28.2
Medtr2g007050 Medicago truncatula HOM05D007281 ORTHO05D009241 9.3e-08 62.0 164 30.5
Medtr2g090030 Medicago truncatula HOM05D007281 ORTHO05D009241 9.3e-08 62.0 164 30.5
THA.LOC104809493 Tarenaya hassleriana HOM05D007281 ORTHO05D009241 1.6e-07 61.2 153 32.7
ClCG01G013900 Citrullus lanatus HOM05D007281 ORTHO05D009241 2.1e-07 60.8 145 31.0
Os05g0481800 Oryza sativa ssp. japonica HOM05D007281 ORTHO05D009241 2.1e-07 60.8 114 33.3
Sed0007470 Sechium edule HOM05D007281 ORTHO05D009241 2.7e-07 60.5 157 31.8
Aa31LG1G2830 Aethionema arabicum HOM05D007281 ORTHO05D009241 4.6e-07 59.7 144 32.6
TPR.G27076 Trifolium pratense HOM05D007281 ORTHO05D009241 7.8e-07 58.9 164 29.3
vmacro09292 Vaccinium macrocarpon HOM05D007281 ORTHO05D009241 3.9e-06 56.6 91 37.4
Duzib052G0115 Durio zibethinus HOM05D007281 ORTHO05D009241 5.1e-06 56.2 124 29.8
AT1G11900 Arabidopsis thaliana HOM05D007281 ORTHO05D009241 8.7e-06 55.5 142 28.2


User provided reference genes

Program Settings