Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1127G084 Amborella trichopoda HOM05D004331 ORTHO05D004984 2.2e-158 562.4 307 100.0
MBI15_g36678_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 1.8e-112 409.8 253 85.0
TAR636G1774 Trochodendron aralioides HOM05D004331 ORTHO05D004984 2.9e-110 402.5 268 75.7
Nn5g26801 Nelumbo nucifera HOM05D004331 ORTHO05D004984 3.7e-110 402.1 277 80.5
Aqoxy4G03301 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 6.4e-110 401.4 231 85.7
Peaxi162Scf00073g02119 Petunia axillaris HOM05D004331 ORTHO05D004984 5.6e-106 388.3 291 70.1
RcHm_v2.0_Chr1g0372681 Rosa chinensis HOM05D004331 ORTHO05D004984 1.2e-105 387.1 271 73.1
ClCG11G005520 Citrullus lanatus HOM05D004331 ORTHO05D004984 3.6e-105 385.6 280 73.6
Manes.10G004100 Manihot esculenta HOM05D004331 ORTHO05D004984 6.2e-105 384.8 280 68.9
Haze_17376 Corylus avellana HOM05D004331 ORTHO05D004984 8.1e-105 384.4 274 73.4
Hma1.2p1_0264F.1_g105850 Hydrangea macrophylla HOM05D004331 ORTHO05D004984 8.1e-105 384.4 248 78.6
TWI73G1241 Tripterygium wilfordii HOM05D004331 ORTHO05D004984 8.1e-105 384.4 293 70.0
MSTRG.156 Avicennia marina HOM05D004331 ORTHO05D004984 1.4e-104 383.6 274 71.5
Nitab4.5_0009756g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 2.4e-104 382.9 276 72.8
Sc11g0006070 Simmondsia chinensis HOM05D004331 ORTHO05D004984 4.0e-104 382.1 280 69.3
Cfa001189 Carpinus fangiana HOM05D004331 ORTHO05D004984 5.2e-104 381.7 274 72.3
MD01G1171000 Malus domestica HOM05D004331 ORTHO05D004984 5.2e-104 381.7 245 78.0
Dinv34508 Davidia involucrata HOM05D004331 ORTHO05D004984 8.9e-104 380.9 279 71.7
MD07G1237400 Malus domestica HOM05D004331 ORTHO05D004984 8.9e-104 380.9 246 78.5
CANSAT56G0386 Cannabis sativa HOM05D004331 ORTHO05D004984 1.5e-103 380.2 273 70.7
Thhalv10006036m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 1.5e-103 380.2 263 73.0
C04p02240 Brassica napus HOM05D004331 ORTHO05D004984 2.0e-103 379.8 281 69.8
PGSC0003DMG400005253 Solanum tuberosum HOM05D004331 ORTHO05D004984 2.0e-103 379.8 248 78.6
PSO017G4126 Papaver somniferum HOM05D004331 ORTHO05D004984 2.6e-103 379.4 252 78.2
PSO170G2208 Papaver somniferum HOM05D004331 ORTHO05D004984 2.6e-103 379.4 254 76.8
CSS0028422 Camellia sinensis var. sinensis HOM05D004331 ORTHO05D004984 4.4e-103 378.6 252 75.8
FvH4_7g26230 Fragaria vesca HOM05D004331 ORTHO05D004984 4.4e-103 378.6 269 71.4
Sed0000286 Sechium edule HOM05D004331 ORTHO05D004984 4.4e-103 378.6 283 73.5
FAN06G3213 Fragaria x ananassa HOM05D004331 ORTHO05D004984 7.6e-103 377.9 241 78.8
Sopen03g025450 Solanum pennellii HOM05D004331 ORTHO05D004984 7.6e-103 377.9 251 77.7
BcaC02g12734 Brassica carinata HOM05D004331 ORTHO05D004984 9.9e-103 377.5 278 69.8
HPP92_012570 Vanilla planifolia HOM05D004331 ORTHO05D004984 9.9e-103 377.5 282 70.2
Solyc03g095470.3 Solanum lycopersicum HOM05D004331 ORTHO05D004984 1.7e-102 376.7 251 77.3
Ciclev10031884m.g Citrus clementina HOM05D004331 ORTHO05D004984 2.2e-102 376.3 285 68.1
Thhalv10016808m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 2.2e-102 376.3 255 73.7
QL08p065166 Quercus lobata HOM05D004331 ORTHO05D004984 2.2e-102 376.3 253 76.3
BolC4t21871H Brassica oleracea HOM05D004331 ORTHO05D004984 2.9e-102 375.9 255 74.5
CARHR135900 Cardamine hirsuta HOM05D004331 ORTHO05D004984 2.9e-102 375.9 255 74.1
CsaV3_5G039270 Cucumis sativus L. HOM05D004331 ORTHO05D004984 2.9e-102 375.9 265 72.8
MELO3C022105.2 Cucumis melo HOM05D004331 ORTHO05D004984 3.8e-102 375.6 275 70.9
Sp5g06060 Schrenkiella parvula HOM05D004331 ORTHO05D004984 3.8e-102 375.6 265 71.3
A05p01900 Brassica napus HOM05D004331 ORTHO05D004984 4.9e-102 375.2 255 74.1
BraA05t19188Z Brassica rapa HOM05D004331 ORTHO05D004984 4.9e-102 375.2 255 74.1
SalBow3G0869 Salvia bowleyana HOM05D004331 ORTHO05D004984 4.9e-102 375.2 234 79.1
Actinidia01013 Actinidia chinensis HOM05D004331 ORTHO05D004984 6.4e-102 374.8 247 75.7
Duzib114G0903 Durio zibethinus HOM05D004331 ORTHO05D004984 6.4e-102 374.8 276 73.6
FAN10G3590 Fragaria x ananassa HOM05D004331 ORTHO05D004984 8.4e-102 374.4 269 70.6
Glyma.06G141000 Glycine max HOM05D004331 ORTHO05D004984 8.4e-102 374.4 277 70.4
AL4G38690 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 1.1e-101 374.0 255 73.7
Lj1A969T93 Lonicera japonica HOM05D004331 ORTHO05D004984 1.1e-101 374.0 239 77.8
THA.LOC104814366 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 1.1e-101 374.0 270 70.4
Migut.F00564 Erythranthe guttata HOM05D004331 ORTHO05D004984 1.4e-101 373.6 310 65.5
EL10Ac2g02684 Beta vulgaris HOM05D004331 ORTHO05D004984 1.9e-101 373.2 275 73.1
Cpa.g.sc19.35 Carica papaya HOM05D004331 ORTHO05D004984 1.9e-101 373.2 296 66.9
AT2G40800 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 3.2e-101 372.5 255 72.9
CAN.G30.2 Capsicum annuum HOM05D004331 ORTHO05D004984 3.2e-101 372.5 262 74.4
DCAR_020157 Daucus carota HOM05D004331 ORTHO05D004984 3.2e-101 372.5 265 73.2
Rhsim09G0186700 Rhododendron simsii HOM05D004331 ORTHO05D004984 3.2e-101 372.5 253 80.6
Lsat_1_v5_gn_2_127600 Lactuca sativa HOM05D004331 ORTHO05D004984 4.2e-101 372.1 251 75.7
Sp4g23120 Schrenkiella parvula HOM05D004331 ORTHO05D004984 5.4e-101 371.7 255 72.9
arahy.Tifrunner.gnm1.ann1.J1TSCZ Arachis hypogaea HOM05D004331 ORTHO05D004984 1.6e-100 370.2 241 76.3
Phvul.009G042200 Phaseolus vulgaris HOM05D004331 ORTHO05D004984 1.6e-100 370.2 255 73.3
AT3G56430 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 2.1e-100 369.8 264 70.8
Carub.0005s2321 Capsella rubella HOM05D004331 ORTHO05D004984 2.1e-100 369.8 264 70.5
HanXRQChr07g0204811 Helianthus annuus HOM05D004331 ORTHO05D004984 2.1e-100 369.8 270 70.7
Atru.chr12.214 Acer truncatum HOM05D004331 ORTHO05D004984 2.7e-100 369.4 251 74.5
arahy.Tifrunner.gnm1.ann1.M9I45E Arachis hypogaea HOM05D004331 ORTHO05D004984 3.5e-100 369.0 233 77.7
CARHR166560 Cardamine hirsuta HOM05D004331 ORTHO05D004984 4.6e-100 368.6 263 70.3
Potri.019G062200 Populus trichocarpa HOM05D004331 ORTHO05D004984 4.6e-100 368.6 285 69.1
SEGI_36006 Sequoiadendron giganteum HOM05D004331 ORTHO05D004984 4.6e-100 368.6 226 80.5
Actinidia07780 Actinidia chinensis HOM05D004331 ORTHO05D004984 6.0e-100 368.2 252 73.8
A09p49380 Brassica napus HOM05D004331 ORTHO05D004984 6.0e-100 368.2 263 71.1
BraA09t40391Z Brassica rapa HOM05D004331 ORTHO05D004984 6.0e-100 368.2 263 71.1
Os01g0168300 Oryza sativa ssp. japonica HOM05D004331 ORTHO05D004984 6.0e-100 368.2 254 74.4
Duzib128G0601 Durio zibethinus HOM05D004331 ORTHO05D004984 7.8e-100 367.9 277 68.6
Aa31LG10G11310 Aethionema arabicum HOM05D004331 ORTHO05D004984 1.3e-99 367.1 264 70.5
AL5G37760 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 1.3e-99 367.1 264 69.7
AUR62032546 Chenopodium quinoa HOM05D004331 ORTHO05D004984 1.3e-99 367.1 263 69.6
vmacro09950 Vaccinium macrocarpon HOM05D004331 ORTHO05D004984 1.3e-99 367.1 223 79.4
Glyma.04G223900 Glycine max HOM05D004331 ORTHO05D004984 2.3e-99 366.3 277 69.3
VMungo1309G0248 Vigna mungo HOM05D004331 ORTHO05D004984 2.3e-99 366.3 255 72.5
THA.LOC104824369 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 3.0e-99 365.9 249 72.7
Psat5g069640 Pisum sativum HOM05D004331 ORTHO05D004984 3.9e-99 365.5 281 68.0
PGR142G0580 Punica granatum HOM05D004331 ORTHO05D004984 1.5e-98 363.6 255 71.8
Thecc.10G186200 Theobroma cacao HOM05D004331 ORTHO05D004984 5.6e-98 361.7 276 68.1
unitig_88.g27825 Utricularia gibba HOM05D004331 ORTHO05D004984 5.6e-98 361.7 275 68.4
Eucgr.L02349 Eucalyptus grandis HOM05D004331 ORTHO05D004984 1.3e-97 360.5 264 68.9
Gohir.D10G184000 Gossypium hirsutum HOM05D004331 ORTHO05D004984 1.3e-97 360.5 276 67.8
Gorai.011G206200 Gossypium raimondii HOM05D004331 ORTHO05D004984 1.3e-97 360.5 276 67.8
Lalb_Chr11g0067651 Lupinus albus HOM05D004331 ORTHO05D004984 1.6e-97 360.1 245 73.9
Hund13431 Selenicereus undatus HOM05D004331 ORTHO05D004984 1.6e-97 360.1 310 61.6
SGA_v2.0_scaffold397G50761 Striga asiatica HOM05D004331 ORTHO05D004984 2.1e-97 359.8 263 71.5
Eucgr.G03152 Eucalyptus grandis HOM05D004331 ORTHO05D004984 2.8e-97 359.4 264 69.3
Medtr3g093690 Medicago truncatula HOM05D004331 ORTHO05D004984 2.8e-97 359.4 308 64.9
COL.COLO4_19485 Corchorus olitorius HOM05D004331 ORTHO05D004984 8.1e-97 357.8 272 67.6
BolC8t50795H Brassica oleracea HOM05D004331 ORTHO05D004984 1.4e-96 357.1 230 76.5
Ca_16853_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 1.4e-96 357.1 283 65.7
Ca_29501_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 1.4e-96 357.1 283 65.7
TPR.G13966 Trifolium pratense HOM05D004331 ORTHO05D004984 1.4e-96 357.1 279 67.0
Gohir.A10G177400 Gossypium hirsutum HOM05D004331 ORTHO05D004984 6.9e-96 354.8 272 67.3
Sabra19G0075700 Salix brachista HOM05D004331 ORTHO05D004984 2.6e-95 352.8 288 67.7
Sabra19G0081100 Salix brachista HOM05D004331 ORTHO05D004984 2.6e-95 352.8 288 67.7
Lalb_Chr08g0239281 Lupinus albus HOM05D004331 ORTHO05D004984 9.9e-95 350.9 232 73.3
Lj1g0025811 Lotus japonicus HOM05D004331 ORTHO05D004984 1.4e-93 347.1 260 64.6
Mapoly0158s0020 Marchantia polymorpha HOM05D004331 ORTHO05D004984 1.4e-93 347.1 261 66.3
ECA238G1814 Erigeron canadensis HOM05D004331 ORTHO05D004984 1.9e-93 346.7 218 77.5
AagrBONN_evm.TU.Sc2ySwM_340.90 Anthoceros agrestis HOM05D004331 ORTHO05D004984 3.9e-91 339.0 241 71.4
Pp3c7_18440 Physcomitrium patens HOM05D004331 ORTHO05D004984 3.9e-91 339.0 256 67.2
Pp3c1_5190 Physcomitrium patens HOM05D004331 ORTHO05D004984 1.5e-90 337.0 279 63.8
SGA_v2.0_scaffold60G20876 Striga asiatica HOM05D004331 ORTHO05D004984 9.0e-88 327.8 258 65.9
Dinv21866 Davidia involucrata HOM05D004331 ORTHO05D004984 2.0e-87 326.6 194 82.5
BcaC07g39957 Brassica carinata HOM05D004331 ORTHO05D004984 6.0e-84 315.1 263 64.3
SMO199G0115 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 1.5e-82 310.5 256 62.5
GSVIVG01032862001 Vitis vinifera HOM05D004331 ORTHO05D004984 1.9e-82 310.1 178 85.4
SMO361G0183 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 2.5e-82 309.7 255 62.4
Cc02_g05110 Coffea canephora HOM05D004331 ORTHO05D004984 9.6e-82 307.8 179 84.9
FAN01G2544 Fragaria x ananassa HOM05D004331 ORTHO05D004984 1.4e-80 303.9 180 83.9
Actinidia13632 Actinidia chinensis HOM05D004331 ORTHO05D004984 1.3e-78 297.4 243 65.8
CBR_g29882 Chara braunii HOM05D004331 ORTHO05D004984 1.4e-77 293.9 253 62.8
C08p31740 Brassica napus HOM05D004331 ORTHO05D004984 5.1e-75 285.4 263 60.5
Nitab4.5_0018056g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 2.6e-71 273.1 190 75.8
Oeu039397.2 Olea europaea HOM05D004331 ORTHO05D004984 3.8e-70 269.2 177 79.7
CiPaw.02G199300 Carya illinoinensis HOM05D004331 ORTHO05D004984 6.5e-70 268.5 173 77.5
Zm00001eb336450 Zea mays HOM05D004331 ORTHO05D004984 3.7e-65 252.7 151 80.8
AUR62030578 Chenopodium quinoa HOM05D004331 ORTHO05D004984 2.0e-63 246.9 151 78.1
CiPaw.01G307700 Carya illinoinensis HOM05D004331 ORTHO05D004984 2.9e-62 243.0 160 80.6
SMO361G0787 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 3.1e-56 223.0 217 51.2
SMO361G0173 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 9.1e-56 221.5 217 50.7
Ah.10g029610 Amaranthus hybridus HOM05D000033 ORTHO05D000913 3.2e-53 213.0 132 76.5
Prupe.2G266500 Prunus persica HOM05D004331 ORTHO05D004984 7.0e-48 195.3 240 50.4
Manes.03G048500 Manihot esculenta HOM05D004331 ORTHO05D004984 1.7e-46 190.7 280 42.5
Carub.0004s2310 Capsella rubella HOM05D004331 ORTHO05D004984 1.8e-43 180.6 255 44.3
BcaC09g50949 Brassica carinata HOM05D004331 ORTHO05D004984 3.0e-43 179.9 132 68.2
BcaC04g21857 Brassica carinata HOM05D004331 ORTHO05D004984 4.4e-42 176.0 132 65.9
PRCOL_00001688 Prasinoderma coloniale HOM05D004331 ORTHO05D004984 5.7e-42 175.6 228 43.4
C09p26570 Brassica napus HOM05D004331 ORTHO05D004984 2.2e-41 173.7 132 65.9
BolC9t55553H Brassica oleracea HOM05D004331 ORTHO05D004984 2.2e-41 173.7 132 65.9
BcaC02g11378 Brassica carinata HOM05D004331 ORTHO05D004984 3.7e-41 172.9 132 65.9
C04p16400 Brassica napus HOM05D004331 ORTHO05D004984 3.7e-41 172.9 132 65.9
BcaC09g50388 Brassica carinata HOM05D004331 ORTHO05D004984 1.1e-40 171.4 106 75.5
BolC1t02551H Brassica oleracea HOM05D004331 ORTHO05D004984 5.3e-40 169.1 106 74.5
Cre05.g232752 Chlamydomonas reinhardtii HOM05D004331 ORTHO05D004984 1.2e-39 167.9 262 38.2
MSTRG.8387 Avicennia marina HOM05D004331 ORTHO05D004984 3.5e-39 166.4 227 44.1
C01p26060 Brassica napus HOM05D004331 ORTHO05D004984 5.9e-39 165.6 106 73.6
C01p18940 Brassica napus HOM05D004331 ORTHO05D004984 2.2e-38 163.7 102 74.5
BolC1t01820H Brassica oleracea HOM05D004331 ORTHO05D004984 2.2e-38 163.7 102 74.5
Actinidia31642 Actinidia chinensis HOM05D004331 ORTHO05D004984 4.2e-37 159.5 163 59.5
SHI31864 Sapria himalayana HOM05D004331 ORTHO05D004984 2.6e-34 150.2 91 80.2
HPP92_012539 Vanilla planifolia HOM05D004331 ORTHO05D004984 5.7e-34 149.1 122 68.0
MBI15_g10655_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 4.1e-32 142.9 121 68.6
C03p81590 Brassica napus HOM05D004331 ORTHO05D004984 1.7e-30 137.5 104 68.3
BolC3t20429H Brassica oleracea HOM05D004331 ORTHO05D004984 1.7e-30 137.5 104 68.3
BcaC01g00580 Brassica carinata HOM05D003032 ORTHO05D003456 5.0e-30 136.0 104 68.3
Ah.10g029620 Amaranthus hybridus HOM05D004331 ORTHO05D004984 4.2e-29 132.9 112 63.4
BcaC04g23398 Brassica carinata HOM05D004331 ORTHO05D004984 1.8e-27 127.5 106 60.4
AUR62030577 Chenopodium quinoa HOM05D004331 ORTHO05D004984 2.0e-26 124.0 112 58.9
CiPaw.01G307900 Carya illinoinensis HOM05D004331 ORTHO05D004984 1.7e-25 120.9 140 53.6
Eucgr.G03162 Eucalyptus grandis HOM05D004331 ORTHO05D004984 7.0e-24 115.5 111 60.4
Aqoxy4G02083 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 4.5e-23 112.8 63 84.1
SHI31865 Sapria himalayana HOM05D004331 ORTHO05D004984 2.5e-21 107.1 101 57.4
Zm00001eb123190 Zea mays HOM05D004331 ORTHO05D004984 5.6e-21 105.9 97 58.8
BolC9t53789H Brassica oleracea HOM05D004331 ORTHO05D004984 3.0e-19 100.1 59 79.7
SHI31863 Sapria himalayana HOM05D004331 ORTHO05D004984 8.9e-19 98.6 61 70.5
MCO04G099 Micromonas commoda HOM05D004331 ORTHO05D004984 2.2e-17 94.0 236 27.5
VMungo0540G1227 Vigna mungo HOM05D004331 ORTHO05D004984 5.9e-15 85.9 78 56.4
BraA04t18575Z Brassica rapa HOM05D004331 ORTHO05D016805 3.0e-14 83.6 44 90.9
BolC4t28360H Brassica oleracea HOM05D004331 ORTHO05D004984 2.1e-12 77.4 71 57.7
C08p13890 Brassica napus HOM05D013285 ORTHO05D004984 2.8e-12 77.0 98 53.1


User provided reference genes

Program Settings