Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1127G036 Amborella trichopoda HOM05D005178 ORTHO05D006123 1.2e-130 469.9 242 100.0
TAR633G1539 Trochodendron aralioides HOM05D000050 ORTHO05D010482 4.1e-27 125.9 245 34.3
Nn1g01788 Nelumbo nucifera HOM05D005178 ORTHO05D006123 4.4e-21 105.9 239 31.0
MBI06_g02230_MAGBIO Magnolia biondii HOM05D005178 ORTHO05D006123 9.8e-21 104.8 244 32.0
Dinv32550 Davidia involucrata HOM05D005178 ORTHO05D006123 2.4e-19 100.1 233 31.3
PSO384G3117 Papaver somniferum HOM05D005178 ORTHO05D006123 3.5e-18 96.3 230 30.9
PSO135G0875 Papaver somniferum HOM05D005178 ORTHO05D006123 5.9e-18 95.5 230 30.0
Haze_15614 Corylus avellana HOM05D005178 ORTHO05D006123 7.7e-18 95.1 239 32.6
SGA_v2.0_scaffold11G05717 Striga asiatica HOM05D005178 ORTHO05D006123 7.7e-18 95.1 239 32.2
Dinv43890 Davidia involucrata HOM05D005178 ORTHO05D006123 1.3e-17 94.4 168 29.2
Hma1.2p1_2972F.1_g331100 Hydrangea macrophylla HOM05D005178 ORTHO05D006123 2.9e-17 93.2 233 29.6
Rhsim13G0058200 Rhododendron simsii HOM05D008517 ORTHO05D010482 5.0e-17 92.4 196 27.6
Dinv12288 Davidia involucrata HOM05D008517 ORTHO05D010482 8.5e-17 91.7 190 26.8
TAR383G0516 Trochodendron aralioides HOM05D002137 ORTHO05D002144 8.5e-17 91.7 255 27.5
CANSAT56G4005 Cannabis sativa HOM05D005178 ORTHO05D006123 1.5e-16 90.9 237 32.5
Eucgr.J01845 Eucalyptus grandis HOM05D008517 ORTHO05D010482 1.5e-16 90.9 209 24.9
Rhsim07G0007300 Rhododendron simsii HOM05D005178 ORTHO05D006123 1.5e-16 90.9 238 32.8
CSS0038689 Camellia sinensis var. sinensis HOM05D005178 ORTHO05D006123 7.2e-16 88.6 235 32.8
Hma1.2p1_0384F.1_g141000 Hydrangea macrophylla HOM05D005178 ORTHO05D006123 2.1e-15 87.0 233 29.2
Potri.014G094400 Populus trichocarpa HOM05D005178 ORTHO05D006123 2.7e-15 86.7 235 28.1
Rhsim08G0233700 Rhododendron simsii HOM05D002137 ORTHO05D002144 4.7e-15 85.9 222 31.5
Manes.05G026400 Manihot esculenta HOM05D005178 ORTHO05D006123 6.1e-15 85.5 243 25.9
Potri.002G167300 Populus trichocarpa HOM05D005178 ORTHO05D006123 8.0e-15 85.1 235 30.2
Sed0008780 Sechium edule HOM05D005178 ORTHO05D006123 1.0e-14 84.7 229 28.8
CiPaw.01G071600 Carya illinoinensis HOM05D005178 ORTHO05D006123 1.4e-14 84.3 175 26.9
Gohir.D12G113800 Gossypium hirsutum HOM05D005178 ORTHO05D006123 1.8e-14 84.0 241 25.3
MD09G1193000 Malus domestica HOM05D002137 ORTHO05D002144 2.3e-14 83.6 244 28.3
PSO170G1620 Papaver somniferum HOM05D008517 ORTHO05D010482 2.3e-14 83.6 238 29.4
Sabra02G0144400 Salix brachista HOM05D005178 ORTHO05D006123 2.3e-14 83.6 238 28.2
Gorai.008G123300 Gossypium raimondii HOM05D005178 ORTHO05D006123 4.0e-14 82.8 244 26.6
HPP92_005223 Vanilla planifolia HOM05D005178 ORTHO05D006123 6.8e-14 82.0 239 24.3
CSS0018299 Camellia sinensis var. sinensis HOM05D008517 ORTHO05D010482 8.8e-14 81.6 206 26.2
TAR375G0073 Trochodendron aralioides HOM05D005178 ORTHO05D006123 1.2e-13 81.3 106 34.0
HPP92_026775 Vanilla planifolia HOM05D005178 ORTHO05D006123 1.2e-13 81.3 245 29.8
Lj7A504T56 Lonicera japonica HOM05D005178 ORTHO05D006123 2.0e-13 80.5 171 27.5
QL04p059571 Quercus lobata HOM05D005178 ORTHO05D006123 3.4e-13 79.7 241 30.7
Ca_15101_v3 Cicer arietinum L. HOM05D000973 ORTHO05D000652 4.4e-13 79.3 205 27.8
Prupe.3G049400 Prunus persica HOM05D002137 ORTHO05D002144 5.7e-13 79.0 237 28.7
PGR119G1844 Punica granatum HOM05D008517 ORTHO05D010482 7.5e-13 78.6 178 27.5
TAR626G1375 Trochodendron aralioides HOM05D002137 ORTHO05D002144 9.8e-13 78.2 248 30.2
CsaV3_3G043870 Cucumis sativus L. HOM05D002137 ORTHO05D002144 1.3e-12 77.8 235 24.7
FAN10G2759 Fragaria x ananassa HOM05D005178 ORTHO05D006123 1.3e-12 77.8 245 26.9
ClCG07G013740 Citrullus lanatus HOM05D002137 ORTHO05D002144 2.2e-12 77.0 171 27.5
Glyma.18G047800 Glycine max HOM05D000973 ORTHO05D000652 2.8e-12 76.6 215 27.0
Nitab4.5_0000738g0100 Nicotiana tabacum HOM05D002137 ORTHO05D002144 2.8e-12 76.6 261 26.4
PSO832G1419 Papaver somniferum HOM05D002137 ORTHO05D002144 2.8e-12 76.6 167 30.5
MELO3C013058.2 Cucumis melo HOM05D002137 ORTHO05D002144 3.7e-12 76.3 239 25.1
MBI01_g16603_MAGBIO Magnolia biondii HOM05D002137 ORTHO05D002144 3.7e-12 76.3 246 29.7
CSS0025872 Camellia sinensis var. sinensis HOM05D002137 ORTHO05D002144 4.9e-12 75.9 151 28.5
Hma1.2p1_0388F.1_g142370 Hydrangea macrophylla HOM05D002137 ORTHO05D002144 4.9e-12 75.9 151 29.1
Manes.02G211300 Manihot esculenta HOM05D008517 ORTHO05D010482 8.3e-12 75.1 167 26.9
PSO063G6105 Papaver somniferum HOM05D002137 ORTHO05D002144 8.3e-12 75.1 202 26.7
SEGI_20706 Sequoiadendron giganteum HOM05D002137 ORTHO05D002144 1.1e-11 74.7 145 27.6
FAN03G0560 Fragaria x ananassa HOM05D005178 ORTHO05D006123 1.4e-11 74.3 245 27.3
CiPaw.02G139800 Carya illinoinensis HOM05D002137 ORTHO05D002144 1.8e-11 73.9 179 25.1
Lalb_Chr15g0085691 Lupinus albus HOM05D008517 ORTHO05D010482 1.8e-11 73.9 197 22.8
Lalb_Chr14g0372801 Lupinus albus HOM05D002137 ORTHO05D002144 2.4e-11 73.6 217 30.0
Actinidia26072 Actinidia chinensis HOM05D002137 ORTHO05D002144 3.1e-11 73.2 177 27.1
HPP92_020005 Vanilla planifolia HOM05D002137 ORTHO05D002144 3.1e-11 73.2 174 25.9
Duzib160G0633 Durio zibethinus HOM05D002137 ORTHO05D002144 4.1e-11 72.8 220 24.5
CSS0036942 Camellia sinensis var. sinensis HOM05D002137 ORTHO05D002144 5.4e-11 72.4 249 24.1
Duzib133G0451 Durio zibethinus HOM05D005178 ORTHO05D006123 5.4e-11 72.4 174 23.0
FvH4_7g15840 Fragaria vesca HOM05D005178 ORTHO05D006123 5.4e-11 72.4 245 26.9
FAN06G0749 Fragaria x ananassa HOM05D005178 ORTHO05D006123 5.4e-11 72.4 245 26.9
RcHm_v2.0_Chr1g0358651 Rosa chinensis HOM05D005178 ORTHO05D006123 9.2e-11 71.6 242 26.9
HPP92_008777 Vanilla planifolia HOM05D002137 ORTHO05D002144 9.2e-11 71.6 176 25.0
Gohir.D11G099200 Gossypium hirsutum HOM05D005178 ORTHO05D006123 1.2e-10 71.2 238 27.3
Atru.chr10.2344 Acer truncatum HOM05D008517 ORTHO05D010482 1.6e-10 70.9 213 23.9
CiPaw.01G224800 Carya illinoinensis HOM05D002137 ORTHO05D002144 1.6e-10 70.9 220 30.0
Gohir.A11G094200 Gossypium hirsutum HOM05D005178 ORTHO05D006123 1.6e-10 70.9 238 27.7
Gohir.D05G137400 Gossypium hirsutum HOM05D002137 ORTHO05D002144 1.6e-10 70.9 206 32.5
Lj2P930T13 Lonicera japonica HOM05D000973 ORTHO05D000652 1.6e-10 70.9 187 26.7
Cfa003583 Carpinus fangiana HOM05D002137 ORTHO05D002144 2.0e-10 70.5 152 27.6
Ciclev10021837m.g Citrus clementina HOM05D005178 ORTHO05D006123 2.0e-10 70.5 236 30.1
Haze_15956 Corylus avellana HOM05D002137 ORTHO05D002144 2.0e-10 70.5 152 27.0
Gorai.007G105400 Gossypium raimondii HOM05D005178 ORTHO05D006123 2.0e-10 70.5 238 27.3
Oeu026755.1 Olea europaea HOM05D002137 ORTHO05D002144 2.0e-10 70.5 157 27.4
Sed0014294 Sechium edule HOM05D002137 ORTHO05D002144 2.0e-10 70.5 178 26.4
FAN10G1950 Fragaria x ananassa HOM05D005178 ORTHO05D006123 2.7e-10 70.1 243 25.9
Glyma.13G349900 Glycine max HOM05D002137 ORTHO05D002144 2.7e-10 70.1 149 28.2
Glyma.15G024400 Glycine max HOM05D002137 ORTHO05D002144 2.7e-10 70.1 151 27.2
Gohir.A09G115800 Gossypium hirsutum HOM05D000973 ORTHO05D000652 2.7e-10 70.1 184 31.5
MBI04_g31164_MAGBIO Magnolia biondii HOM05D002137 ORTHO05D002144 2.7e-10 70.1 217 31.8
VMungo1080G1841 Vigna mungo HOM05D002137 ORTHO05D002144 2.7e-10 70.1 217 27.2
Gohir.A05G135400 Gossypium hirsutum HOM05D002137 ORTHO05D002144 4.5e-10 69.3 188 32.4
Thecc.01G348100 Theobroma cacao HOM05D005178 ORTHO05D006123 4.5e-10 69.3 237 26.2
COL.COLO4_30678 Corchorus olitorius HOM05D002137 ORTHO05D002144 5.9e-10 68.9 222 31.1
Gorai.009G141800 Gossypium raimondii HOM05D002137 ORTHO05D002144 5.9e-10 68.9 206 32.0
Nitab4.5_0002297g0080 Nicotiana tabacum HOM05D000973 ORTHO05D000652 5.9e-10 68.9 241 27.0
Dinv27991 Davidia involucrata HOM05D002137 ORTHO05D002144 7.7e-10 68.6 190 26.3
Lj2A1104T76 Lonicera japonica HOM05D008517 ORTHO05D010482 7.7e-10 68.6 219 22.4
MD09G1187500 Malus domestica HOM05D000973 ORTHO05D000652 7.7e-10 68.6 133 35.3
Phvul.006G083600 Phaseolus vulgaris HOM05D000973 ORTHO05D000652 7.7e-10 68.6 213 26.8
Sed0023034 Sechium edule HOM05D002137 ORTHO05D002144 7.7e-10 68.6 228 26.8
Duzib138G0021 Durio zibethinus HOM05D005178 ORTHO05D006123 1.0e-09 68.2 172 20.9
Sed0006216 Sechium edule HOM05D005178 ORTHO05D006123 1.3e-09 67.8 219 21.5
Duzib211G0611 Durio zibethinus HOM05D000973 ORTHO05D000652 1.7e-09 67.4 203 28.6
FAN06G4203 Fragaria x ananassa HOM05D005178 ORTHO05D006123 1.7e-09 67.4 243 25.5
Nitab4.5_0003779g0030 Nicotiana tabacum HOM05D005178 ORTHO05D006123 2.3e-09 67.0 227 30.4
Lalb_Chr23g0267771 Lupinus albus HOM05D002137 ORTHO05D002144 2.9e-09 66.6 243 24.7
unitig_748.g7459 Utricularia gibba HOM05D002137 ORTHO05D002144 2.9e-09 66.6 151 25.2
CAN.G304.10 Capsicum annuum HOM05D000973 ORTHO05D000652 3.8e-09 66.2 240 27.9
Duzib116G0631 Durio zibethinus HOM05D000973 ORTHO05D000652 3.8e-09 66.2 201 27.4
Sabra15G0156800 Salix brachista HOM05D000973 ORTHO05D000652 3.8e-09 66.2 195 27.2
Potri.015G148200 Populus trichocarpa HOM05D000973 ORTHO05D000652 5.0e-09 65.9 192 25.0
SHI13195 Sapria himalayana HOM05D005178 ORTHO05D006123 5.0e-09 65.9 174 23.6
Thecc.06G113200 Theobroma cacao HOM05D002137 ORTHO05D002144 6.6e-09 65.5 222 29.3
Phvul.008G207300 Phaseolus vulgaris HOM05D000973 ORTHO05D000652 8.6e-09 65.1 177 26.6
Solyc12g095980.2 Solanum lycopersicum HOM05D002137 ORTHO05D002144 1.1e-08 64.7 233 26.2
Glyma.07G009700 Glycine max HOM05D002137 ORTHO05D002144 1.5e-08 64.3 150 26.0
Os05g0199100 Oryza sativa ssp. japonica HOM05D002137 ORTHO05D002144 1.5e-08 64.3 152 30.3
Sabra16G0322300 Salix brachista HOM05D000973 ORTHO05D000652 1.5e-08 64.3 190 25.3
Actinidia10100 Actinidia chinensis HOM05D005178 ORTHO05D006123 1.9e-08 63.9 239 27.6
MSTRG.25949 Avicennia marina HOM05D002137 ORTHO05D002144 1.9e-08 63.9 198 23.2
Lj3g0017057 Lotus japonicus HOM05D002137 ORTHO05D002144 2.5e-08 63.5 160 26.9
VMungo0647G0865 Vigna mungo HOM05D000973 ORTHO05D000652 3.3e-08 63.2 156 26.3
A06p13520 Brassica napus HOM05D002137 ORTHO05D002144 4.3e-08 62.8 226 29.6
BraA06t24504Z Brassica rapa HOM05D002137 ORTHO05D002144 4.3e-08 62.8 226 29.6
CiPaw.04G006900 Carya illinoinensis HOM05D000973 ORTHO05D000652 4.3e-08 62.8 235 28.9
Eucgr.J02856 Eucalyptus grandis HOM05D002137 ORTHO05D002144 4.3e-08 62.8 148 28.4
TWI53G1827 Tripterygium wilfordii HOM05D000973 ORTHO05D000652 4.3e-08 62.8 179 27.4
Medtr3g078820 Medicago truncatula HOM05D000973 ORTHO05D000652 5.6e-08 62.4 183 26.8
Medtr5g087760 Medicago truncatula HOM05D000973 ORTHO05D000652 5.6e-08 62.4 211 23.7
Oeu048843.1 Olea europaea HOM05D002687 ORTHO05D002052 5.6e-08 62.4 147 25.9
Sc09g0009850 Simmondsia chinensis HOM05D002137 ORTHO05D002144 5.6e-08 62.4 203 26.6
Sed0017309 Sechium edule HOM05D002137 ORTHO05D002144 7.3e-08 62.0 165 25.5
VMungo0331G0439 Vigna mungo HOM05D002137 ORTHO05D002144 9.5e-08 61.6 217 27.6
BcaC05g25683 Brassica carinata HOM05D002137 ORTHO05D002144 1.2e-07 61.2 227 30.0
C05p16010 Brassica napus HOM05D002137 ORTHO05D002144 1.2e-07 61.2 227 30.0
BolC5t30303H Brassica oleracea HOM05D002137 ORTHO05D002144 1.2e-07 61.2 227 30.0
Duzib235G1395 Durio zibethinus HOM05D002137 ORTHO05D002144 1.2e-07 61.2 205 29.8
Medtr3g063310 Medicago truncatula HOM05D000973 ORTHO05D000652 1.2e-07 61.2 146 28.1
Gohir.A05G273700 Gossypium hirsutum HOM05D000973 ORTHO05D000652 2.1e-07 60.5 185 34.6
Actinidia07275 Actinidia chinensis HOM05D002687 ORTHO05D002052 2.8e-07 60.1 147 26.5
arahy.Tifrunner.gnm1.ann1.GB3LZN Arachis hypogaea HOM05D000973 ORTHO05D000652 2.8e-07 60.1 146 27.4
MSTRG.11657 Avicennia marina HOM05D002137 ORTHO05D002144 2.8e-07 60.1 225 21.8
MSTRG.14203 Avicennia marina HOM05D000973 ORTHO05D000652 2.8e-07 60.1 157 28.7
TAR622G0017 Trochodendron aralioides HOM05D000973 ORTHO05D000652 2.8e-07 60.1 147 29.9
arahy.Tifrunner.gnm1.ann1.1PEW3E Arachis hypogaea HOM05D000973 ORTHO05D000652 3.6e-07 59.7 146 27.4
BcaB07g34019 Brassica carinata HOM05D002137 ORTHO05D002144 3.6e-07 59.7 226 28.8
CSS0043006 Camellia sinensis var. sinensis HOM05D000973 ORTHO05D000652 3.6e-07 59.7 163 30.7
Duzib150G0577 Durio zibethinus HOM05D000973 ORTHO05D000652 3.6e-07 59.7 228 23.7
Phvul.009G077900 Phaseolus vulgaris HOM05D002137 ORTHO05D002144 3.6e-07 59.7 246 23.6
THA.LOC104812217 Tarenaya hassleriana HOM05D002137 ORTHO05D002144 3.6e-07 59.7 222 30.6
Ca_23320_v3 Cicer arietinum L. HOM05D002137 ORTHO05D002144 4.7e-07 59.3 217 25.3
Solyc11g068900.1 Solanum lycopersicum HOM05D002687 ORTHO05D002052 4.7e-07 59.3 172 24.4
Sopen11g027610 Solanum pennellii HOM05D002687 ORTHO05D002052 4.7e-07 59.3 172 24.4
TPR.G15400 Trifolium pratense HOM05D000973 ORTHO05D000652 4.7e-07 59.3 222 27.9
Cfa014581 Carpinus fangiana HOM05D000973 ORTHO05D000652 6.1e-07 58.9 200 26.0
Eucgr.F03133 Eucalyptus grandis HOM05D002137 ORTHO05D002144 6.1e-07 58.9 148 27.7
Oeu059614.1 Olea europaea HOM05D002137 ORTHO05D002144 6.1e-07 58.9 185 22.7
Psat2g048600 Pisum sativum HOM05D000973 ORTHO05D000652 6.1e-07 58.9 148 31.1
VMungo0540G2442 Vigna mungo HOM05D000973 ORTHO05D000652 8.0e-07 58.5 214 23.4
Cc07_g12590 Coffea canephora HOM05D000973 ORTHO05D000652 1.0e-06 58.2 190 28.4
Lj7P270T4 Lonicera japonica HOM05D002137 ORTHO05D002144 1.0e-06 58.2 254 22.4
Nitab4.5_0000522g0010 Nicotiana tabacum HOM05D005178 ORTHO05D006123 1.0e-06 58.2 209 27.8
Prupe.8G267700 Prunus persica HOM05D000973 ORTHO05D000652 1.0e-06 58.2 201 25.4
TWI74G0302 Tripterygium wilfordii HOM05D000973 ORTHO05D000652 1.0e-06 58.2 173 32.4
PGR102G0962 Punica granatum HOM05D002137 ORTHO05D002144 1.4e-06 57.8 177 23.2
Lalb_Chr15g0085481 Lupinus albus HOM05D000973 ORTHO05D000652 1.8e-06 57.4 164 26.8
Medtr8g016370 Medicago truncatula HOM05D002137 ORTHO05D002144 1.8e-06 57.4 205 24.9
Rhsim13G0195600 Rhododendron simsii HOM05D002687 ORTHO05D002052 1.8e-06 57.4 186 23.7
Sc23g0005630 Simmondsia chinensis HOM05D002137 ORTHO05D002144 1.8e-06 57.4 203 24.1
DCAR_021234 Daucus carota HOM05D000973 ORTHO05D000652 2.3e-06 57.0 165 26.7
Gohir.D05G276100 Gossypium hirsutum HOM05D000973 ORTHO05D000652 2.3e-06 57.0 184 33.7
Gorai.009G289100 Gossypium raimondii HOM05D000973 ORTHO05D000652 2.3e-06 57.0 184 33.7
PGSC0003DMG400019632 Solanum tuberosum HOM05D002687 ORTHO05D002052 3.0e-06 56.6 172 23.8
Ciclev10012533m.g Citrus clementina HOM05D000973 ORTHO05D000652 4.0e-06 56.2 202 29.2
Lj6g0020440 Lotus japonicus HOM05D000973 ORTHO05D000652 4.0e-06 56.2 146 27.4
Prupe.6G142400 Prunus persica HOM05D002687 ORTHO05D002052 4.0e-06 56.2 147 27.2
TWI79G0900 Tripterygium wilfordii HOM05D002687 ORTHO05D002052 4.0e-06 56.2 147 26.5
Psat0s3979g0120 Pisum sativum HOM05D002137 ORTHO05D002144 5.2e-06 55.8 209 25.8
VMungo1309G0275 Vigna mungo HOM05D002137 ORTHO05D002144 5.2e-06 55.8 193 24.9
QL02p055486 Quercus lobata HOM05D000973 ORTHO05D000652 6.8e-06 55.5 170 28.8
QL02p056528 Quercus lobata HOM05D000973 ORTHO05D000652 6.8e-06 55.5 170 28.8
Sabra16G0321200 Salix brachista HOM05D002456 ORTHO05D002994 6.8e-06 55.5 158 28.5
Duzib168G1867 Durio zibethinus HOM05D000973 ORTHO05D000652 8.9e-06 55.1 144 24.3
Oeu018639.1 Olea europaea HOM05D002137 ORTHO05D002144 8.9e-06 55.1 237 25.7


User provided reference genes

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