Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1126G058 Amborella trichopoda HOM05D004073 ORTHO05D004785 1.1e-173 613.2 325 100.0
CiPaw.01G209600 Carya illinoinensis HOM05D004073 ORTHO05D004785 2.2e-92 343.2 330 57.0
Cc02_g24500 Coffea canephora HOM05D004073 ORTHO05D004785 5.4e-91 338.6 335 56.4
Ciclev10008892m.g Citrus clementina HOM05D004073 ORTHO05D004785 2.3e-89 333.2 333 55.6
Manes.03G140000 Manihot esculenta HOM05D004073 ORTHO05D004785 3.0e-89 332.8 331 55.9
MBI16_g14388_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 3.9e-89 332.4 330 60.9
Potri.001G366000 Populus trichocarpa HOM05D004073 ORTHO05D004785 8.6e-89 331.3 332 56.6
Cfa002798 Carpinus fangiana HOM05D004073 ORTHO05D004785 5.6e-88 328.6 330 56.1
MD11G1201600 Malus domestica HOM05D004073 ORTHO05D004785 9.5e-88 327.8 335 54.9
Dinv10322 Davidia involucrata HOM05D004073 ORTHO05D004785 6.2e-87 325.1 335 56.1
Sabra16G0239500 Salix brachista HOM05D004073 ORTHO05D004785 2.3e-86 323.2 331 55.3
CiPaw.02G129700 Carya illinoinensis HOM05D004073 ORTHO05D004785 3.1e-86 322.8 330 53.9
TWI39G0963 Tripterygium wilfordii HOM05D004073 ORTHO05D004785 4.0e-86 322.4 331 55.6
TAR629G1509 Trochodendron aralioides HOM05D004073 ORTHO05D004785 2.6e-85 319.7 334 56.9
QL08p004797 Quercus lobata HOM05D004073 ORTHO05D004785 3.4e-85 319.3 333 54.1
Peaxi162Scf00529g00814 Petunia axillaris HOM05D004073 ORTHO05D004785 4.4e-85 318.9 334 54.2
GSVIVG01014646001 Vitis vinifera HOM05D004073 ORTHO05D004785 7.5e-85 318.2 335 55.8
Sc03g0011140 Simmondsia chinensis HOM05D004073 ORTHO05D004785 1.3e-84 317.4 334 54.8
Thecc.07G016400 Theobroma cacao HOM05D004073 ORTHO05D004785 1.3e-84 317.4 332 55.7
Hma1.2p1_0036F.1_g022540 Hydrangea macrophylla HOM05D004073 ORTHO05D004785 2.9e-84 316.2 332 54.5
MD00G1099100 Malus domestica HOM05D004073 ORTHO05D004785 4.9e-84 315.5 333 52.3
Duzib213G1048 Durio zibethinus HOM05D004073 ORTHO05D004785 1.1e-83 314.3 332 54.8
Prupe.4G240000 Prunus persica HOM05D004073 ORTHO05D004785 1.1e-83 314.3 329 53.5
CDE06G2507 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 4.1e-83 312.4 339 54.3
Nitab4.5_0000276g0150 Nicotiana tabacum HOM05D004073 ORTHO05D004785 5.4e-83 312.0 335 54.0
Haze_25099 Corylus avellana HOM05D004073 ORTHO05D004785 1.6e-82 310.5 330 53.6
Sopen04g025530 Solanum pennellii HOM05D004073 ORTHO05D004785 6.0e-82 308.5 334 53.9
CSS0032183 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 7.8e-82 308.1 332 53.9
Solyc04g056610.3 Solanum lycopersicum HOM05D004073 ORTHO05D004785 7.8e-82 308.1 334 53.9
CSS0000121 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 1.0e-81 307.8 333 53.5
Manes.15G061500 Manihot esculenta HOM05D004073 ORTHO05D004785 1.0e-81 307.8 331 52.9
Sed0023598 Sechium edule HOM05D004073 ORTHO05D004785 1.7e-81 307.0 326 50.9
ClCG09G021180 Citrullus lanatus HOM05D004073 ORTHO05D004785 3.0e-81 306.2 330 52.1
Lj3g0026799 Lotus japonicus HOM05D004073 ORTHO05D004785 3.0e-81 306.2 327 52.9
Sed0026445 Sechium edule HOM05D004073 ORTHO05D004785 3.0e-81 306.2 325 52.0
Nitab4.5_0000083g0020 Nicotiana tabacum HOM05D004073 ORTHO05D004785 3.9e-81 305.8 335 52.5
Gorai.002G098800 Gossypium raimondii HOM05D004073 ORTHO05D004785 5.1e-81 305.4 332 53.3
Lj8A177T32 Lonicera japonica HOM05D004073 ORTHO05D004785 6.6e-81 305.1 285 56.1
Rhsim04G0013700 Rhododendron simsii HOM05D004073 ORTHO05D004785 6.6e-81 305.1 329 54.1
RcHm_v2.0_Chr5g0053951 Rosa chinensis HOM05D004073 ORTHO05D004785 6.6e-81 305.1 334 50.0
MSTRG.20573 Avicennia marina HOM05D004073 ORTHO05D004785 8.6e-81 304.7 332 52.4
TAR629G1249 Trochodendron aralioides HOM05D004073 ORTHO05D004785 1.1e-80 304.3 335 55.2
arahy.Tifrunner.gnm1.ann1.AHDC81 Arachis hypogaea HOM05D004073 ORTHO05D004785 2.5e-80 303.1 336 53.6
PGSC0003DMG400010530 Solanum tuberosum HOM05D004073 ORTHO05D004785 2.5e-80 303.1 334 54.5
Gohir.D01G075600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 3.3e-80 302.8 332 53.0
arahy.Tifrunner.gnm1.ann1.9SIV6F Arachis hypogaea HOM05D004073 ORTHO05D004785 4.3e-80 302.4 336 53.9
MELO3C024919.2 Cucumis melo HOM05D004073 ORTHO05D004785 4.3e-80 302.4 330 51.8
Gohir.A01G090300 Gossypium hirsutum HOM05D004073 ORTHO05D004785 4.3e-80 302.4 331 53.2
Duzib170G0711 Durio zibethinus HOM05D004073 ORTHO05D004785 9.5e-80 301.2 333 52.9
Gohir.A13G133800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.2e-79 300.8 337 53.4
BcaC04g20215 Brassica carinata HOM05D004073 ORTHO05D004785 3.6e-79 299.3 336 51.8
C09p46590 Brassica napus HOM05D004073 ORTHO05D004785 3.6e-79 299.3 336 51.8
BolC9t57510H Brassica oleracea HOM05D004073 ORTHO05D004785 3.6e-79 299.3 336 51.8
Hund01907 Selenicereus undatus HOM05D004073 ORTHO05D004785 4.7e-79 298.9 341 50.7
Hund23121 Selenicereus undatus HOM05D004073 ORTHO05D004785 6.2e-79 298.5 339 51.9
VMungo0464G1872 Vigna mungo HOM05D004073 ORTHO05D004785 2.3e-78 296.6 280 57.9
Gorai.013G153800 Gossypium raimondii HOM05D004073 ORTHO05D004785 5.2e-78 295.4 337 52.5
PGR083G0661 Punica granatum HOM05D004073 ORTHO05D004785 5.2e-78 295.4 336 50.9
PGSC0003DMG400003290 Solanum tuberosum HOM05D004073 ORTHO05D004785 1.5e-77 293.9 334 52.7
CSS0006286 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 2.0e-77 293.5 277 56.7
CAN.G217.4 Capsicum annuum HOM05D004073 ORTHO05D004785 2.0e-77 293.5 335 51.9
Medtr4g086170 Medicago truncatula HOM05D004073 ORTHO05D004785 2.0e-77 293.5 333 51.7
CANSAT01G2739 Cannabis sativa HOM05D004073 ORTHO05D004785 2.6e-77 293.1 335 50.1
HanXRQChr05g0159911 Helianthus annuus HOM05D004073 ORTHO05D004785 2.6e-77 293.1 341 51.0
Phvul.004G069300 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 3.4e-77 292.7 347 50.4
Migut.B01283 Erythranthe guttata HOM05D004073 ORTHO05D004785 4.4e-77 292.4 335 49.9
HanXRQChr07g0195741 Helianthus annuus HOM05D004073 ORTHO05D004785 5.8e-77 292.0 340 50.9
AT5G55610 Arabidopsis thaliana HOM05D004073 ORTHO05D004785 7.6e-77 291.6 335 52.8
THA.LOC104817703 Tarenaya hassleriana HOM05D004073 ORTHO05D004785 7.6e-77 291.6 343 50.4
Eucgr.F02061 Eucalyptus grandis HOM05D004073 ORTHO05D004785 2.2e-76 290.0 325 50.8
Ca_04178_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 3.8e-76 289.3 326 51.5
Lj1A888G37 Lonicera japonica HOM05D004073 ORTHO05D004785 4.9e-76 288.9 276 56.5
SGA_v2.0_scaffold119G32745 Striga asiatica HOM05D004073 ORTHO05D004785 4.9e-76 288.9 358 51.1
Lsat_1_v5_gn_5_1501 Lactuca sativa HOM05D004073 ORTHO05D004785 6.4e-76 288.5 327 52.6
A10p12860 Brassica napus HOM05D004073 ORTHO05D004785 8.4e-76 288.1 337 51.6
BraA10t43379Z Brassica rapa HOM05D004073 ORTHO05D004785 8.4e-76 288.1 337 51.6
Glyma.16G148100 Glycine max HOM05D004073 ORTHO05D004785 8.4e-76 288.1 332 51.8
Carub.0008s1598 Capsella rubella HOM05D004073 ORTHO05D004785 1.1e-75 287.7 334 53.9
BcaB08g35921 Brassica carinata HOM05D004073 ORTHO05D004785 1.9e-75 287.0 335 53.1
Oeu005967.2 Olea europaea HOM05D004073 ORTHO05D004785 5.4e-75 285.4 388 44.6
Gohir.D13G137200 Gossypium hirsutum HOM05D004073 ORTHO05D004785 7.1e-75 285.0 331 52.0
CARHR268920 Cardamine hirsuta HOM05D004073 ORTHO05D004785 1.6e-74 283.9 336 51.5
CDE04G2763 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 1.6e-74 283.9 313 53.7
Glyma.02G067000 Glycine max HOM05D004073 ORTHO05D004785 1.6e-74 283.9 332 52.1
A02p09590 Brassica napus HOM05D004073 ORTHO05D004785 2.1e-74 283.5 340 52.9
Sp6g17530 Schrenkiella parvula HOM05D004073 ORTHO05D004785 3.5e-74 282.7 336 52.4
BraA02t06023Z Brassica rapa HOM05D004073 ORTHO05D004785 4.6e-74 282.3 340 52.9
vmacro09656 Vaccinium macrocarpon HOM05D004073 ORTHO05D004785 4.6e-74 282.3 367 47.4
FAN11G2481 Fragaria x ananassa HOM05D004073 ORTHO05D004785 7.8e-74 281.6 322 49.4
Lalb_Chr01g0018421 Lupinus albus HOM05D004073 ORTHO05D004785 7.8e-74 281.6 332 50.0
Thhalv10014039m.g Eutrema salsugineum HOM05D004073 ORTHO05D004785 1.7e-73 280.4 341 53.4
C02p15980 Brassica napus HOM05D004073 ORTHO05D004785 2.3e-73 280.0 339 53.1
FvH4_3g29460 Fragaria vesca HOM05D004073 ORTHO05D004785 1.5e-72 277.3 325 48.9
PSO210G1542 Papaver somniferum HOM05D004073 ORTHO05D004785 1.5e-72 277.3 336 50.6
SalBow3G0415 Salvia bowleyana HOM05D004073 ORTHO05D004785 2.5e-72 276.6 320 49.1
FAN25G0469 Fragaria x ananassa HOM05D004073 ORTHO05D004785 3.3e-72 276.2 320 49.4
Lalb_Chr15g0083341 Lupinus albus HOM05D004073 ORTHO05D004785 7.3e-72 275.0 332 48.2
Medtr6g005540 Medicago truncatula HOM05D004073 ORTHO05D004785 7.3e-72 275.0 341 47.8
PSO302G0019 Papaver somniferum HOM05D004073 ORTHO05D004785 7.3e-72 275.0 336 50.0
RcHm_v2.0_Chr5g0077271 Rosa chinensis HOM05D004073 ORTHO05D004785 1.6e-71 273.9 330 48.2
Aa31LG3G11560 Aethionema arabicum HOM05D004073 ORTHO05D004785 1.8e-70 270.4 380 44.7
AL8G31180 Arabidopsis lyrata HOM05D004073 ORTHO05D004785 3.1e-70 269.6 334 50.6
FAN21G2863 Fragaria x ananassa HOM05D004073 ORTHO05D004785 4.0e-70 269.2 325 47.7
TPR.G8724 Trifolium pratense HOM05D004073 ORTHO05D004785 8.9e-70 268.1 325 49.2
COL.COLO4_09810 Corchorus olitorius HOM05D004073 ORTHO05D004785 1.5e-69 267.3 273 53.1
SalBow6G4871 Salvia bowleyana HOM05D004073 ORTHO05D004785 1.5e-69 267.3 302 50.3
unitig_26.g10112 Utricularia gibba HOM05D004073 ORTHO05D004785 2.0e-69 266.9 338 47.3
Aqoxy5G03484 Aquilegia oxysepala HOM05D004073 ORTHO05D004785 2.6e-69 266.5 333 49.8
BolC2t07705H Brassica oleracea HOM05D004073 ORTHO05D004785 9.9e-69 264.6 369 48.2
EL10Ac4g07603 Beta vulgaris HOM05D004073 ORTHO05D004785 2.9e-68 263.1 338 49.1
DCAR_013227 Daucus carota HOM05D002706 ORTHO05D003253 3.8e-68 262.7 331 48.0
Lj2g0012663 Lotus japonicus HOM05D004073 ORTHO05D004785 1.4e-67 260.8 320 47.2
Ah.06g181300 Amaranthus hybridus HOM05D004073 ORTHO05D004785 2.4e-67 260.0 330 47.6
Ca_19377_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 3.2e-67 259.6 328 46.6
Lj6g0025058 Lotus japonicus HOM05D004073 ORTHO05D004785 9.3e-67 258.1 320 47.2
AUR62017071 Chenopodium quinoa HOM05D004073 ORTHO05D004785 2.1e-66 256.9 342 46.5
AUR62036423 Chenopodium quinoa HOM05D004073 ORTHO05D004785 7.8e-66 255.0 341 45.7
AUR62036429 Chenopodium quinoa HOM05D004073 ORTHO05D004785 1.7e-65 253.8 341 45.5
arahy.Tifrunner.gnm1.ann1.F1PCFU Arachis hypogaea HOM05D004073 ORTHO05D004785 1.5e-64 250.8 339 45.1
Medtr4g055190 Medicago truncatula HOM05D004073 ORTHO05D004785 3.6e-63 246.1 328 44.5
Psat1g055880 Pisum sativum HOM05D004073 ORTHO05D004785 3.6e-63 246.1 325 47.1
arahy.Tifrunner.gnm1.ann1.HAYR03 Arachis hypogaea HOM05D004073 ORTHO05D004785 4.8e-63 245.7 327 45.9
VMungo0540G1827 Vigna mungo HOM05D004073 ORTHO05D004785 1.1e-62 244.6 243 53.5
CsaV3_7G018320 Cucumis sativus L. HOM05D004073 ORTHO05D004785 1.8e-62 243.8 220 57.7
Phvul.006G074800 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 4.0e-62 242.7 330 44.8
BcaB05g22217 Brassica carinata HOM05D004073 ORTHO05D004785 9.0e-62 241.5 299 50.8
Psat7g190200 Pisum sativum HOM05D004073 ORTHO05D004785 4.5e-61 239.2 319 45.5
HPP92_020483 Vanilla planifolia HOM05D004073 ORTHO05D004785 1.7e-60 237.3 318 46.9
Nn1g07482 Nelumbo nucifera HOM05D004073 ORTHO05D004785 2.9e-60 236.5 256 57.4
Dinv40845 Davidia involucrata HOM05D004073 ORTHO05D004785 2.4e-59 233.4 255 54.5
Os12g0498800 Oryza sativa ssp. japonica HOM05D004073 ORTHO05D004785 2.4e-59 233.4 328 44.8
ECA240G0169 Erigeron canadensis HOM05D004073 ORTHO05D004785 5.4e-59 232.3 281 48.8
Cpa.g.sc12.171 Carica papaya HOM05D004073 ORTHO05D004785 1.1e-54 218.0 339 43.1
Actinidia35391 Actinidia chinensis HOM05D004073 ORTHO05D004785 2.4e-54 216.9 177 60.5
MD00G1008300 Malus domestica HOM05D004073 ORTHO05D004785 5.3e-54 215.7 261 49.0
CANSAT01G1348 Cannabis sativa HOM05D004073 ORTHO05D004785 2.9e-52 209.9 336 42.6
Mapoly0030s0146 Marchantia polymorpha HOM05D004073 ORTHO05D004785 7.1e-51 205.3 237 48.5
Haze_03265 Corylus avellana HOM05D004073 ORTHO05D004785 7.9e-50 201.8 233 51.9
Pp3c17_1290 Physcomitrium patens HOM05D004073 ORTHO05D004785 4.3e-48 196.1 329 43.2
Pp3c12_2880 Physcomitrium patens HOM05D004073 ORTHO05D004785 9.6e-48 194.9 333 41.4
arahy.Tifrunner.gnm1.ann1.0WG7ZM Arachis hypogaea HOM05D004073 ORTHO05D004785 1.6e-47 194.1 174 56.9
ECA246G0082 Erigeron canadensis HOM05D004073 ORTHO05D004785 2.8e-47 193.4 295 41.7
Atru.chr2.3668 Acer truncatum HOM05D004073 ORTHO05D004785 2.4e-46 190.3 163 62.0
arahy.Tifrunner.gnm1.ann1.W5ZFFA Arachis hypogaea HOM05D004073 ORTHO05D004785 3.4e-45 186.4 160 57.5
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 6.5e-44 182.2 327 40.4
AagrBONN_evm.TU.Sc2ySwM_117.3546 Anthoceros agrestis HOM05D004073 ORTHO05D004785 8.4e-44 181.8 279 42.3
Nn1g03214 Nelumbo nucifera HOM05D004073 ORTHO05D004785 2.5e-40 170.2 221 51.1
MBI16_g14390_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 4.5e-37 159.5 140 53.6
Gohir.D06G153600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.6e-34 151.0 204 52.0
MBI16_g43434_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 3.6e-34 149.8 125 56.0
Gorai.013G151000 Gossypium raimondii HOM05D004073 ORTHO05D004785 3.9e-33 146.4 204 51.0
Gorai.010G179600 Gossypium raimondii HOM05D004073 ORTHO05D004785 2.5e-32 143.7 171 54.4
Gorai.002G215300 Gossypium raimondii HOM05D004073 ORTHO05D004785 4.3e-32 142.9 204 50.0
SEGI_11688 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 5.0e-28 129.4 127 51.2
TPR.G15593 Trifolium pratense HOM05D004073 ORTHO05D004785 8.5e-28 128.6 129 48.1
SEGI_22606 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 5.1e-25 119.4 201 45.3
Zm00001eb409570 Zea mays HOM05D004073 ORTHO05D004785 5.1e-25 119.4 210 43.3
TPR.G31066 Trifolium pratense HOM05D004073 ORTHO05D004785 9.1e-22 108.6 140 47.9
Thecc.07G016200 Theobroma cacao HOM05D004073 ORTHO05D004785 4.5e-21 106.3 96 54.2
TAR626G1493 Trochodendron aralioides HOM05D004073 ORTHO05D004785 5.5e-19 99.4 129 51.2
CBR_g33924 Chara braunii HOM05D004073 ORTHO05D004785 1.2e-18 98.2 220 35.5
Medtr4g055205 Medicago truncatula HOM05D004073 ORTHO05D004785 2.1e-18 97.4 90 51.1
Gohir.A04G002800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 4.7e-18 96.3 135 48.1
Actinidia37162 Actinidia chinensis HOM05D004073 ORTHO05D004785 2.0e-16 90.9 176 40.9
MBI19_g20151_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 5.9e-13 79.3 136 36.8
PGSC0003DMG401021129 Solanum tuberosum HOM05D004073 ORTHO05D004785 7.7e-13 79.0 138 36.2
HPP92_020450 Vanilla planifolia HOM05D004073 ORTHO05D004785 4.7e-10 69.7 88 40.9
GSVIVG01014652001 Vitis vinifera HOM05D004073 ORTHO05D004785 4.0e-09 66.6 60 48.3
PRCOL_00005800 Prasinoderma coloniale HOM05D004073 ORTHO05D004785 6.7e-09 65.9 238 26.1
Lsat_1_v5_gn_1_76240 Lactuca sativa HOM05D004073 ORTHO05D004785 1.1e-06 58.5 49 65.3


User provided reference genes

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