Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 5.4e-133 477.6 238 100.0
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 4.7e-76 288.5 178 78.7
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 1.3e-73 280.4 232 61.6
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 5.4e-72 275.0 213 64.8
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 1.2e-71 273.9 237 57.8
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 1.2e-71 273.9 240 60.8
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 2.0e-71 273.1 203 69.0
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 3.5e-71 272.3 183 72.7
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 1.7e-70 270.0 183 69.9
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 2.9e-70 269.2 187 71.1
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 6.6e-70 268.1 184 70.7
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 1.1e-69 267.3 187 71.7
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 1.5e-69 266.9 179 72.6
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 1.9e-69 266.5 177 72.3
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 1.6e-68 263.5 183 70.5
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 1.6e-68 263.5 217 62.2
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 2.1e-68 263.1 177 72.9
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 2.1e-68 263.1 180 71.7
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 6.1e-68 261.5 188 68.6
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 1.4e-67 260.4 190 67.4
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 1.8e-67 260.0 182 69.2
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 1.8e-67 260.0 182 69.2
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 2.3e-67 259.6 179 71.5
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 3.0e-67 259.2 182 69.2
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 1.2e-66 257.3 208 61.5
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 2.6e-66 256.1 183 68.3
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 2.6e-66 256.1 208 62.0
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 5.7e-66 255.0 181 68.5
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 5.7e-66 255.0 178 70.8
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 7.5e-66 254.6 178 70.8
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 7.5e-66 254.6 240 55.4
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 9.8e-66 254.2 179 68.7
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 1.3e-65 253.8 203 61.1
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 1.7e-65 253.4 190 65.3
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 2.2e-65 253.1 182 67.6
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 2.8e-65 252.7 184 67.4
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 2.8e-65 252.7 179 68.2
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 4.9e-65 251.9 175 70.9
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 6.3e-65 251.5 178 67.4
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 6.3e-65 251.5 179 67.6
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 8.3e-65 251.1 172 68.6
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 8.3e-65 251.1 183 67.8
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 1.1e-64 250.8 178 66.9
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 1.1e-64 250.8 178 66.9
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 1.4e-64 250.4 186 64.0
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 1.4e-64 250.4 177 69.5
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 1.4e-64 250.4 176 69.3
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 1.8e-64 250.0 182 67.6
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 2.4e-64 249.6 183 65.0
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 3.1e-64 249.2 180 67.8
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 4.1e-64 248.8 191 67.0
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 7.0e-64 248.1 183 64.5
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 7.0e-64 248.1 178 66.9
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 1.2e-63 247.3 180 66.1
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 1.2e-63 247.3 180 66.1
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 1.2e-63 247.3 180 66.1
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 2.0e-63 246.5 217 57.6
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 2.0e-63 246.5 186 66.7
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.7e-63 246.1 183 67.2
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 3.5e-63 245.7 219 58.4
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 3.5e-63 245.7 194 63.4
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 3.5e-63 245.7 185 64.3
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 4.5e-63 245.4 187 62.6
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 5.9e-63 245.0 178 69.7
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 5.9e-63 245.0 204 59.3
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 7.8e-63 244.6 180 66.1
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 7.8e-63 244.6 228 58.8
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 1.0e-62 244.2 202 59.9
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 1.3e-62 243.8 179 67.0
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 1.7e-62 243.4 209 58.9
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 1.7e-62 243.4 187 62.0
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 2.3e-62 243.0 176 67.0
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 2.9e-62 242.7 196 62.8
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 3.8e-62 242.3 178 65.7
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 3.8e-62 242.3 177 65.0
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 5.0e-62 241.9 182 64.8
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 6.6e-62 241.5 215 59.1
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 6.6e-62 241.5 180 67.2
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 8.6e-62 241.1 181 66.3
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 8.6e-62 241.1 178 63.5
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 1.5e-61 240.4 178 65.7
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 1.9e-61 240.0 176 65.9
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 5.6e-61 238.4 182 63.2
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 7.3e-61 238.0 178 64.0
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 7.3e-61 238.0 178 64.0
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 7.3e-61 238.0 177 65.5
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 7.3e-61 238.0 176 65.3
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.2e-60 237.3 153 75.2
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 1.6e-60 236.9 182 65.9
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 2.1e-60 236.5 145 74.5
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 2.8e-60 236.1 191 62.3
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 6.1e-60 235.0 148 73.0
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 6.1e-60 235.0 187 62.0
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 6.1e-60 235.0 143 74.8
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 8.0e-60 234.6 164 69.5
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.4e-59 233.8 146 76.0
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 1.8e-59 233.4 178 62.4
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 2.3e-59 233.0 150 72.0
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 3.1e-59 232.6 144 73.6
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 4.0e-59 232.3 143 76.2
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 4.0e-59 232.3 144 74.3
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 4.0e-59 232.3 143 74.8
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 5.2e-59 231.9 174 66.7
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 5.2e-59 231.9 180 62.8
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 6.8e-59 231.5 143 76.2
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 6.8e-59 231.5 152 70.4
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 1.2e-58 230.7 150 74.7
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 1.2e-58 230.7 170 70.0
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 3.4e-58 229.2 207 56.5
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 4.4e-58 228.8 137 76.6
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 5.8e-58 228.4 184 59.2
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 5.8e-58 228.4 185 59.5
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 2.2e-57 226.5 186 60.2
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 2.2e-57 226.5 207 56.5
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 4.9e-57 225.3 230 50.4
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.4e-56 223.8 183 59.6
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 1.9e-56 223.4 150 71.3
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 9.2e-56 221.1 184 58.7
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 1.1e-53 214.2 158 64.6
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 1.9e-53 213.4 151 67.5
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 2.3e-51 206.5 127 73.2
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.3e-51 206.5 179 57.5
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 9.8e-50 201.1 150 65.3
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 3.7e-49 199.1 151 61.6
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 1.4e-48 197.2 139 72.7
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 1.9e-48 196.8 181 57.5
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 4.6e-47 192.2 139 64.0
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 1.0e-46 191.0 163 60.7
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 3.0e-46 189.5 146 59.6
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 1.9e-45 186.8 220 49.1
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 5.6e-45 185.3 142 64.1
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 5.6e-45 185.3 139 59.0
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 8.9e-43 177.9 116 74.1
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 1.4e-40 170.6 161 55.9
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 5.4e-40 168.7 139 61.2
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 7.8e-39 164.9 179 52.0
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 1.1e-35 154.5 172 50.0
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 1.5e-34 150.6 113 67.3
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 5.8e-34 148.7 150 53.3
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.7e-31 139.8 179 43.6
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 1.3e-30 137.5 160 50.0
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 8.7e-30 134.8 124 54.8
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 5.8e-26 122.1 167 46.1
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 3.8e-25 119.4 79 68.4
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 1.6e-23 114.0 112 54.5
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.3e-20 104.4 142 41.5
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 1.5e-18 97.4 162 35.8
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 6.4e-17 92.0 131 39.7
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 5.4e-16 89.0 152 36.2
Cre03.g207000 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 4.6e-15 85.9 153 34.0
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 2.6e-10 70.1 117 34.2
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 3.4e-10 69.7 150 32.7
VMungo0251G1321 Vigna mungo HOM05D000154 ORTHO05D000092 7.6e-10 68.6 85 44.7
MCO03G104 Micromonas commoda HOM05D004693 ORTHO05D005545 1.0e-09 68.2 114 32.5
CDE06G0519 Ceratophyllum demersum HOM05D004693 ORTHO05D005545 2.1e-07 60.5 88 43.2


User provided reference genes

Program Settings