Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1120G180 Amborella trichopoda HOM05D004002 ORTHO05D004668 0.0e+00 2601.6 1317 100.0
TAR636G2372 Trochodendron aralioides HOM05D004002 ORTHO05D004668 0.0e+00 1672.5 1348 65.9
MBI04_g29332_MAGBIO Magnolia biondii HOM05D004002 ORTHO05D004668 0.0e+00 1653.3 1344 65.8
Aqoxy7G02288 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 0.0e+00 1596.6 1357 63.9
PSO170G6007 Papaver somniferum HOM05D004002 ORTHO05D004668 0.0e+00 1588.9 1343 63.9
PSO017G4586 Papaver somniferum HOM05D004002 ORTHO05D004668 0.0e+00 1588.2 1343 63.5
CDE03G0124 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 0.0e+00 1561.6 1342 61.6
Nn2g12080 Nelumbo nucifera HOM05D004002 ORTHO05D004668 0.0e+00 1555.4 1344 62.2
Actinidia21966 Actinidia chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1547.7 1351 62.3
Cfa003405 Carpinus fangiana HOM05D004002 ORTHO05D004668 0.0e+00 1542.3 1341 61.9
CiPaw.03G246900 Carya illinoinensis HOM05D004002 ORTHO05D004668 0.0e+00 1536.2 1340 62.1
Rhsim01G0066800 Rhododendron simsii HOM05D004002 ORTHO05D004668 0.0e+00 1529.2 1353 60.9
Manes.14G114600 Manihot esculenta HOM05D004002 ORTHO05D004668 0.0e+00 1527.3 1339 61.8
Gohir.A07G036800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1526.9 1333 61.8
TWI32G0682 Tripterygium wilfordii HOM05D004002 ORTHO05D004668 0.0e+00 1526.1 1339 61.2
Duzib168G0398 Durio zibethinus HOM05D004002 ORTHO05D004668 0.0e+00 1520.8 1349 61.7
Potri.018G128400 Populus trichocarpa HOM05D004002 ORTHO05D004668 0.0e+00 1520.8 1344 61.5
Atru.chr7.1118 Acer truncatum HOM05D004002 ORTHO05D004668 0.0e+00 1520.4 1337 61.3
Gohir.D07G040800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1518.1 1333 61.5
CANSAT11G1469 Cannabis sativa HOM05D004002 ORTHO05D004668 0.0e+00 1516.1 1336 61.0
Gorai.001G043400 Gossypium raimondii HOM05D004002 ORTHO05D004668 0.0e+00 1515.7 1333 61.4
Thecc.09G129800 Theobroma cacao HOM05D004002 ORTHO05D004668 0.0e+00 1515.7 1344 61.5
Ca_30460_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 0.0e+00 1513.8 1321 60.9
COL.COLO4_35123 Corchorus olitorius HOM05D004002 ORTHO05D004668 0.0e+00 1510.4 1345 61.3
Lj4g0004437 Lotus japonicus HOM05D004002 ORTHO05D004668 0.0e+00 1507.3 1335 60.4
MD02G1028100 Malus domestica HOM05D004002 ORTHO05D004668 0.0e+00 1505.0 1337 61.2
Medtr4g114930 Medicago truncatula HOM05D004002 ORTHO05D004668 0.0e+00 1500.3 1332 60.6
Cc06_g08210 Coffea canephora HOM05D004002 ORTHO05D004668 0.0e+00 1499.2 1344 61.2
Eucgr.C04259 Eucalyptus grandis HOM05D004002 ORTHO05D004668 0.0e+00 1498.8 1248 64.6
RcHm_v2.0_Chr2g0087941 Rosa chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1498.4 1356 60.4
Glyma.13G158400 Glycine max HOM05D004002 ORTHO05D004668 0.0e+00 1496.5 1345 60.3
FvH4_1g02820 Fragaria vesca HOM05D004002 ORTHO05D004668 0.0e+00 1494.9 1337 60.4
FAN28G1420 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1494.9 1337 60.5
Prupe.7G246700 Prunus persica HOM05D004002 ORTHO05D004668 0.0e+00 1494.9 1332 61.5
HPP92_024596 Vanilla planifolia HOM05D004002 ORTHO05D004668 0.0e+00 1494.9 1352 60.2
GSVIVG01015557001 Vitis vinifera HOM05D004002 ORTHO05D004668 0.0e+00 1492.2 1297 62.5
ClCG06G011370 Citrullus lanatus HOM05D004002 ORTHO05D004668 0.0e+00 1491.5 1343 61.0
Nitab4.5_0001776g0030 Nicotiana tabacum HOM05D004002 ORTHO05D004668 0.0e+00 1489.6 1343 60.7
FAN19G2815 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1487.2 1367 59.4
Sopen07g003960 Solanum pennellii HOM05D004002 ORTHO05D004668 0.0e+00 1481.5 1335 60.5
vmacro20578 Vaccinium macrocarpon HOM05D004002 ORTHO05D004668 0.0e+00 1481.1 1410 57.8
Duzib187G1937 Durio zibethinus HOM05D004002 ORTHO05D004668 0.0e+00 1478.8 1344 60.1
MELO3C010320.2 Cucumis melo HOM05D004002 ORTHO05D004668 0.0e+00 1476.8 1345 60.7
CAN.G138.14 Capsicum annuum HOM05D004002 ORTHO05D004668 0.0e+00 1473.8 1337 60.4
Lalb_Chr13g0301701 Lupinus albus HOM05D004002 ORTHO05D004668 0.0e+00 1471.8 1339 60.1
THA.LOC104811026 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 0.0e+00 1469.5 1334 59.4
DCAR_014896 Daucus carota HOM05D004002 ORTHO05D004668 0.0e+00 1465.3 1323 60.5
Sp1g41730 Schrenkiella parvula HOM05D004002 ORTHO05D004668 0.0e+00 1463.0 1337 59.5
Gohir.A08G238400 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1459.5 1351 58.8
SalBow1G7082 Salvia bowleyana HOM05D004002 ORTHO05D004668 0.0e+00 1459.1 1337 60.1
Ciclev10007259m.g Citrus clementina HOM05D004002 ORTHO05D004668 0.0e+00 1458.7 1337 60.1
AT3G33530 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 0.0e+00 1455.3 1332 59.1
Sc18g0000460 Simmondsia chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1455.3 1370 59.5
MSTRG.26413 Avicennia marina HOM05D004002 ORTHO05D004668 0.0e+00 1454.5 1305 60.1
Lalb_Chr12g0198051 Lupinus albus HOM05D004002 ORTHO05D004668 0.0e+00 1453.3 1348 58.5
Gorai.004G276600 Gossypium raimondii HOM05D004002 ORTHO05D004668 0.0e+00 1452.6 1351 58.8
AUR62013328 Chenopodium quinoa HOM05D004002 ORTHO05D004668 0.0e+00 1452.2 1347 58.9
BcaC08g43677 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1451.8 1327 59.2
MD15G1169800 Malus domestica HOM05D004002 ORTHO05D004668 0.0e+00 1451.0 1339 59.6
Zm00001eb231770 Zea mays HOM05D004002 ORTHO05D004668 0.0e+00 1449.5 1337 59.6
BcaB07g33169 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1448.7 1335 59.1
arahy.Tifrunner.gnm1.ann1.S50ZLM Arachis hypogaea HOM05D004002 ORTHO05D004668 0.0e+00 1448.3 1355 58.4
BraSC56t46385Z Brassica rapa HOM05D004002 ORTHO05D004668 0.0e+00 1446.8 1349 58.5
Sed0021658 Sechium edule HOM05D004002 ORTHO05D004668 0.0e+00 1445.3 1338 59.4
Gohir.D08G259100 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1443.7 1357 58.6
C06p10960 Brassica napus HOM05D004002 ORTHO05D004668 0.0e+00 1442.6 1328 59.0
arahy.Tifrunner.gnm1.ann1.R22NLQ Arachis hypogaea HOM05D004002 ORTHO05D004668 0.0e+00 1441.4 1342 58.4
QL02p089511 Quercus lobata HOM05D004002 ORTHO05D004668 0.0e+00 1439.9 1556 53.1
AL5G20770 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 0.0e+00 1436.4 1339 58.6
HanXRQChr09g0241521 Helianthus annuus HOM05D004002 ORTHO05D004668 0.0e+00 1434.1 1350 57.8
BolC6t36178H Brassica oleracea HOM05D004002 ORTHO05D004668 0.0e+00 1432.9 1349 58.2
Carub.0016s0010 Capsella rubella HOM05D004002 ORTHO05D004668 0.0e+00 1432.2 1334 58.5
Hund26527 Selenicereus undatus HOM05D004002 ORTHO05D004668 0.0e+00 1430.6 1340 58.8
FAN23G1361 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1427.9 1337 58.7
Lsat_1_v5_gn_7_43900 Lactuca sativa HOM05D004002 ORTHO05D004668 0.0e+00 1425.2 1360 57.3
Ah.09g225140 Amaranthus hybridus HOM05D004002 ORTHO05D004668 0.0e+00 1414.4 1350 58.1
TPR.G26484 Trifolium pratense HOM05D004002 ORTHO05D004668 0.0e+00 1412.5 1335 58.4
HanXRQChr05g0143441 Helianthus annuus HOM05D004002 ORTHO05D004668 0.0e+00 1403.3 1341 56.9
ECA236G2336 Erigeron canadensis HOM05D004002 ORTHO05D004668 0.0e+00 1400.2 1345 56.7
Lsat_1_v5_gn_8_62220 Lactuca sativa HOM05D004002 ORTHO05D004668 0.0e+00 1395.9 1343 57.0
FAN26G1964 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1394.0 1334 57.9
THA.LOC104808973 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 0.0e+00 1387.1 1334 56.9
Aa31LG4G12760 Aethionema arabicum HOM05D004002 ORTHO05D004668 0.0e+00 1382.5 1393 55.9
DCAR_010315 Daucus carota HOM05D004002 ORTHO05D004668 0.0e+00 1380.2 1340 56.0
SGA_v2.0_scaffold109G31044 Striga asiatica HOM05D004002 ORTHO05D004668 0.0e+00 1369.4 1407 54.8
Thhalv10011188m.g Eutrema salsugineum HOM05D004002 ORTHO05D004668 0.0e+00 1359.4 1235 59.6
Dinv36495 Davidia involucrata HOM05D004002 ORTHO05D004668 0.0e+00 1357.4 1338 57.2
CsaV3_1G030400 Cucumis sativus L. HOM05D004002 ORTHO05D004668 0.0e+00 1351.3 1351 57.2
AUR62011160 Chenopodium quinoa HOM05D004002 ORTHO05D004668 0.0e+00 1338.9 1251 58.9
AL4G19600 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 0.0e+00 1329.3 1327 55.6
Carub.0004s0687 Capsella rubella HOM05D004002 ORTHO05D004668 0.0e+00 1324.3 1325 55.2
SEGI_17541 Sequoiadendron giganteum HOM05D004002 ORTHO05D004668 0.0e+00 1317.0 1275 56.9
EL10Ac8g18695 Beta vulgaris HOM05D004002 ORTHO05D004668 0.0e+00 1313.1 1350 54.8
AT2G26610 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 0.0e+00 1310.4 1327 55.2
FAN23G2019 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1302.0 1145 61.0
Aa31LG5G9160 Aethionema arabicum HOM05D004002 ORTHO05D004668 0.0e+00 1296.6 1354 55.0
BcaC01g04911 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1268.1 1320 53.8
A03p26850 Brassica napus HOM05D004002 ORTHO05D004668 0.0e+00 1267.7 1318 53.3
BraA03t11897Z Brassica rapa HOM05D004002 ORTHO05D004668 0.0e+00 1267.7 1318 53.3
C03p32190 Brassica napus HOM05D004002 ORTHO05D004668 0.0e+00 1265.4 1320 53.4
BolC3t15561H Brassica oleracea HOM05D004002 ORTHO05D004668 0.0e+00 1261.1 1320 53.3
BcaB01g03030 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1258.8 1323 53.4
Sp4g09400 Schrenkiella parvula HOM05D004002 ORTHO05D004668 0.0e+00 1229.5 1330 52.3
Ca_06931_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 0.0e+00 1224.2 1004 64.7
Sabra18G0109200 Salix brachista HOM05D004002 ORTHO05D004668 0.0e+00 1218.8 1051 63.7
Sed0028143 Sechium edule HOM05D004002 ORTHO05D004668 0.0e+00 1198.0 1028 62.9
Dinv41488 Davidia involucrata HOM05D004002 ORTHO05D004668 0.0e+00 1197.2 944 66.9
Nitab4.5_0000028g0120 Nicotiana tabacum HOM05D004002 ORTHO05D004668 0.0e+00 1196.4 1106 59.0
Pp3c11_23650 Physcomitrium patens HOM05D004002 ORTHO05D004668 0.0e+00 1135.9 1371 47.9
Pp3c7_2590 Physcomitrium patens HOM05D004002 ORTHO05D004668 0.0e+00 1124.4 1365 48.5
Mapoly0041s0113 Marchantia polymorpha HOM05D004002 ORTHO05D004668 0.0e+00 1115.1 1380 48.5
VMungo1215G3423 Vigna mungo HOM05D004002 ORTHO05D004668 0.0e+00 1105.1 862 67.3
Phvul.003G167101 Phaseolus vulgaris HOM05D004002 ORTHO05D004668 0.0e+00 1101.7 863 67.7
ECA240G2868 Erigeron canadensis HOM05D004002 ORTHO05D004668 0.0e+00 1078.5 843 67.5
Lj7C426G10 Lonicera japonica HOM05D004002 ORTHO05D004668 9.2e-312 1074.7 982 61.4
Peaxi162Scf00891g00220 Petunia axillaris HOM05D004002 ORTHO05D004668 1.6e-306 1056.6 1010 58.5
unitig_748.g7159 Utricularia gibba HOM05D004002 ORTHO05D004668 7.2e-299 1031.2 1381 47.4
Cpa.g.sc46.23 Carica papaya HOM05D004002 ORTHO05D004668 2.3e-289 999.6 1464 44.1
Psat4g037880 Pisum sativum HOM05D004002 ORTHO05D004668 2.0e-285 986.5 892 58.6
Os02g0137000 Oryza sativa ssp. japonica HOM05D004002 ORTHO05D004668 3.6e-282 975.7 761 69.0
SMO347G0439 Selaginella moellendorffii HOM05D004002 ORTHO05D004668 5.7e-280 968.4 1067 51.8
Migut.K00437 Erythranthe guttata HOM05D004002 ORTHO05D004668 1.1e-273 947.6 866 58.2
AagrBONN_evm.TU.Sc2ySwM_368.2316 Anthoceros agrestis HOM05D004002 ORTHO05D004668 3.0e-268 929.5 1072 51.4
Nn8g39500 Nelumbo nucifera HOM05D004002 ORTHO05D004668 4.4e-256 889.0 659 70.7
CBR_g41081 Chara braunii HOM05D004002 ORTHO05D004668 1.1e-238 831.2 1534 37.5
CARHR153610 Cardamine hirsuta HOM05D004002 ORTHO05D004668 6.5e-215 752.3 606 64.7
Haze_25541 Corylus avellana HOM05D004002 ORTHO05D004668 5.3e-193 679.5 947 46.1
SHI03370 Sapria himalayana HOM05D004002 ORTHO05D000023 2.6e-163 580.9 563 56.3
Haze_25542 Corylus avellana HOM05D004002 ORTHO05D004668 1.4e-156 558.5 652 50.3
CsaV3_UNG023150 Cucumis sativus L. HOM05D004002 ORTHO05D004668 2.5e-150 537.7 569 56.2
CsaV3_UNG026150 Cucumis sativus L. HOM05D004002 ORTHO05D004668 5.2e-148 530.0 732 45.8
Haze_25536 Corylus avellana HOM05D004002 ORTHO05D004668 1.5e-142 511.9 423 65.2
Psat4g037920 Pisum sativum HOM05D004002 ORTHO05D004668 9.9e-139 499.2 425 64.5
Migut.K00436 Erythranthe guttata HOM05D004002 ORTHO05D004668 5.1e-135 486.9 427 64.6
Oeu040328.1 Olea europaea HOM05D004002 ORTHO05D004668 4.8e-125 453.8 368 64.1
VMungo1215G0854 Vigna mungo HOM05D004002 ORTHO05D004668 3.2e-97 361.3 425 47.3
Hund09270 Selenicereus undatus HOM05D004002 ORTHO05D004668 3.7e-85 321.2 259 67.6
Oeu012614.1 Olea europaea HOM05D004002 ORTHO05D004668 2.2e-82 312.0 416 44.7
ECA240G1422 Erigeron canadensis HOM05D004002 ORTHO05D004668 2.1e-80 305.4 359 46.5
SEGI_36835 Sequoiadendron giganteum HOM05D004002 ORTHO05D004668 1.5e-78 299.3 314 50.3
Os02g0136933 Oryza sativa ssp. japonica HOM05D004002 ORTHO05D004668 4.8e-77 294.3 322 50.0
Solyc07g008075.1 Solanum lycopersicum HOM05D004002 ORTHO05D004668 1.1e-76 293.1 222 72.1
Lj7A426T59 Lonicera japonica HOM05D004002 ORTHO05D004668 5.0e-74 284.3 320 46.9
Ca_06930_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 8.5e-74 283.5 308 49.0
Solyc07g008090.4 Solanum lycopersicum HOM05D004002 ORTHO05D004668 7.2e-73 280.4 323 47.7
Aqoxy7G02287 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 1.2e-70 273.1 378 42.6
SHI03372 Sapria himalayana HOM05D004002 ORTHO05D004668 1.4e-68 266.2 320 47.5
Sabra18G0109300 Salix brachista HOM05D004002 ORTHO05D004668 5.4e-68 264.2 327 45.6
CDE04G2506 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 9.4e-65 253.4 277 54.5
Haze_13487 Corylus avellana HOM05D004002 ORTHO05D004668 2.8e-56 225.3 248 48.8
SHI03368 Sapria himalayana HOM05D004002 ORTHO05D004668 2.9e-53 215.3 223 56.5
Dinv41489 Davidia involucrata HOM05D004002 ORTHO05D004668 1.4e-36 159.8 183 47.5
Lsat_1_v5_gn_0_43201 Lactuca sativa HOM05D004002 ORTHO05D004668 4.1e-36 158.3 115 73.0
Lsat_1_v5_gn_8_63461 Lactuca sativa HOM05D004002 ORTHO05D004668 3.4e-30 138.7 214 44.4
Haze_18451 Corylus avellana HOM05D004002 ORTHO05D004668 5.4e-28 131.3 138 49.3
BcaB07g33170 Brassica carinata HOM05D004002 ORTHO05D002109 8.6e-26 124.0 232 39.2
Oeu040327.1 Olea europaea HOM05D004002 ORTHO05D004668 5.6e-25 121.3 117 58.1
SHI03369 Sapria himalayana HOM05D004002 ORTHO05D004668 8.1e-24 117.5 126 54.0
C09p47760 Brassica napus HOM05D004002 ORTHO05D004668 1.0e-18 100.5 63 73.0
C04p60270 Brassica napus HOM05D004002 ORTHO05D004668 3.9e-18 98.6 63 71.4
BolC8t50699H Brassica oleracea HOM05D004002 ORTHO05D004668 3.9e-18 98.6 63 71.4
Hund09269 Selenicereus undatus HOM05D004002 ORTHO05D004668 8.7e-18 97.4 110 51.8
BolC6t36594H Brassica oleracea HOM05D004002 ORTHO05D004668 1.9e-17 96.3 63 69.8
Medtr8g073750 Medicago truncatula HOM05D004002 ORTHO05D004668 5.6e-17 94.7 126 46.0
C06p14160 Brassica napus HOM05D004002 ORTHO05D004668 9.6e-17 94.0 60 71.7
QL02p089531 Quercus lobata HOM05D004002 ORTHO05D004668 6.9e-15 87.8 61 70.5
Cre10.g449950 Chlamydomonas reinhardtii HOM05D004002 ORTHO05D004668 2.0e-14 86.3 256 31.2
PSO541G4337 Papaver somniferum HOM05D004002 ORTHO05D004668 5.1e-10 71.6 77 50.6
TPR.G35745 Trifolium pratense HOM05D004002 ORTHO05D004668 5.1e-10 71.6 124 38.7
Sp1g38940 Schrenkiella parvula HOM05D004002 ORTHO05D004668 2.5e-09 69.3 85 48.2
Aqoxy7G02056 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 4.3e-09 68.6 102 42.2
HanXRQChr14g0456471 Helianthus annuus HOM05D000103 ORTHO05D000001 6.2e-08 64.7 32 96.9
Zm00001eb185460 Zea mays HOM05D007359 ORTHO05D008988 5.3e-07 61.6 86 43.0
HanXRQChr03g0064791 Helianthus annuus HOM05D004002 ORTHO05D004668 1.2e-06 60.5 69 50.7


User provided reference genes

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