Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1120G178 Amborella trichopoda HOM05D006304 ORTHO05D008584 0.0e+00 2390.9 1177 100.0
MBI12_g19403_MAGBIO Magnolia biondii HOM05D006304 ORTHO05D008584 1.2e-151 542.0 924 42.1
Nn3g17140 Nelumbo nucifera HOM05D006304 ORTHO05D008584 3.3e-146 523.9 831 43.6
TAR371G0034 Trochodendron aralioides HOM05D006304 ORTHO05D008584 6.4e-142 509.6 679 47.7
GSVIVG01008051001 Vitis vinifera HOM05D006304 ORTHO05D008584 3.3e-138 497.3 465 60.0
VMungo1215G2961 Vigna mungo HOM05D006304 ORTHO05D008584 1.2e-137 495.4 698 46.6
TAR629G0077 Trochodendron aralioides HOM05D006304 ORTHO05D008584 2.1e-137 494.6 868 41.9
MD14G1195600 Malus domestica HOM05D006304 ORTHO05D008584 2.4e-136 491.1 594 50.8
RcHm_v2.0_Chr7g0180671 Rosa chinensis HOM05D006304 ORTHO05D008584 5.2e-136 490.0 468 58.1
Psat4g053720 Pisum sativum HOM05D006304 ORTHO05D008584 3.4e-135 487.3 504 55.6
Lj4g0004911 Lotus japonicus HOM05D006304 ORTHO05D008584 7.6e-135 486.1 434 60.4
Medtr4g107890 Medicago truncatula HOM05D006304 ORTHO05D008584 9.9e-135 485.7 532 53.9
CDE06G1311 Ceratophyllum demersum HOM05D006304 ORTHO05D008584 3.8e-134 483.8 688 46.2
Phvul.003G192300 Phaseolus vulgaris HOM05D006304 ORTHO05D008584 3.2e-133 480.7 709 44.9
arahy.Tifrunner.gnm1.ann1.E16Z9R Arachis hypogaea HOM05D006304 ORTHO05D008584 5.4e-133 479.9 672 48.1
Glyma.05G029400 Glycine max HOM05D006304 ORTHO05D008584 9.3e-133 479.2 623 47.5
TPR.G38415 Trifolium pratense HOM05D006304 ORTHO05D008584 1.2e-132 478.8 523 54.7
FvH4_5g15410 Fragaria vesca HOM05D006304 ORTHO05D008584 3.5e-132 477.2 603 49.6
MD06G1188800 Malus domestica HOM05D006304 ORTHO05D008584 4.6e-132 476.9 534 53.0
Ca_21844_v3 Cicer arietinum L. HOM05D006304 ORTHO05D008584 7.8e-132 476.1 537 53.3
Cfa018983 Carpinus fangiana HOM05D006304 ORTHO05D008584 2.3e-131 474.6 727 45.5
Prupe.5G187100 Prunus persica HOM05D006304 ORTHO05D008584 3.9e-131 473.8 715 45.2
Glyma.17G097500 Glycine max HOM05D006304 ORTHO05D008584 2.5e-130 471.1 511 54.2
CiPaw.11G039300 Carya illinoinensis HOM05D006304 ORTHO05D008584 1.6e-129 468.4 656 45.9
Aqoxy3G00750 Aquilegia oxysepala HOM05D006304 ORTHO05D008584 8.1e-129 466.1 415 61.9
Oeu048746.1 Olea europaea HOM05D006304 ORTHO05D008584 1.1e-128 465.7 560 50.7
SEGI_29067 Sequoiadendron giganteum HOM05D006304 ORTHO05D008584 1.8e-128 464.9 867 40.7
Gorai.008G191000 Gossypium raimondii HOM05D006304 ORTHO05D008584 5.3e-128 463.4 488 54.7
Cpa.g.sc17.206 Carica papaya HOM05D006304 ORTHO05D008584 1.2e-127 462.2 641 46.6
Actinidia34979 Actinidia chinensis HOM05D006304 ORTHO05D008584 2.0e-127 461.5 714 43.3
Gohir.D12G178452 Gossypium hirsutum HOM05D006304 ORTHO05D008584 2.0e-127 461.5 488 54.9
MELO3C002204.2 Cucumis melo HOM05D006304 ORTHO05D008584 2.6e-127 461.1 658 46.8
Gohir.A12G175370 Gossypium hirsutum HOM05D006304 ORTHO05D008584 2.9e-126 457.6 416 60.8
Duzib205G0644 Durio zibethinus HOM05D006304 ORTHO05D008584 6.4e-126 456.4 620 47.4
Ciclev10019215m.g Citrus clementina HOM05D006304 ORTHO05D008584 4.2e-125 453.8 466 54.9
FAN04G3159 Fragaria x ananassa HOM05D006304 ORTHO05D008584 7.1e-125 453.0 588 48.5
Rhsim12G0159100 Rhododendron simsii HOM05D006304 ORTHO05D008584 9.3e-125 452.6 660 45.5
Sc10g0009990 Simmondsia chinensis HOM05D006304 ORTHO05D008584 9.3e-125 452.6 508 53.7
Potri.015G064600 Populus trichocarpa HOM05D006304 ORTHO05D008584 6.0e-124 449.9 453 55.8
FAN08G3028 Fragaria x ananassa HOM05D006304 ORTHO05D008584 3.9e-123 447.2 588 47.6
TWI60G1649 Tripterygium wilfordii HOM05D006304 ORTHO05D008584 1.5e-122 445.3 485 54.0
arahy.Tifrunner.gnm1.ann1.YQHF2A Arachis hypogaea HOM05D006304 ORTHO05D008584 2.5e-122 444.5 760 43.0
CsaV3_1G007890 Cucumis sativus L. HOM05D006304 ORTHO05D008584 4.3e-122 443.7 871 39.3
Thecc.03G080300 Theobroma cacao HOM05D006304 ORTHO05D008584 1.3e-121 442.2 660 45.9
Sed0028137 Sechium edule HOM05D006304 ORTHO05D008584 2.1e-121 441.4 648 46.3
Sabra15G0090300 Salix brachista HOM05D006304 ORTHO05D008584 2.8e-121 441.0 455 54.9
AUR62008366 Chenopodium quinoa HOM05D006304 ORTHO05D008584 3.6e-121 440.7 556 50.4
Ah.11g048730 Amaranthus hybridus HOM05D006304 ORTHO05D008584 1.8e-120 438.3 500 53.0
Lj5A115T69 Lonicera japonica HOM05D006304 ORTHO05D008584 2.4e-120 438.0 554 50.0
CANSAT80G1066 Cannabis sativa HOM05D006304 ORTHO05D008584 3.1e-120 437.6 695 43.2
AUR62021733 Chenopodium quinoa HOM05D006304 ORTHO05D008584 1.2e-119 435.6 561 48.8
ECA247G4106 Erigeron canadensis HOM05D006304 ORTHO05D008584 1.5e-119 435.3 440 54.1
PGR083G1524 Punica granatum HOM05D006304 ORTHO05D008584 1.3e-118 432.2 450 54.7
FAN18G3228 Fragaria x ananassa HOM05D006304 ORTHO05D008584 2.9e-118 431.0 637 45.2
vmacro16566 Vaccinium macrocarpon HOM05D006304 ORTHO05D008584 4.9e-118 430.3 642 45.8
Cc04_g15450 Coffea canephora HOM05D006304 ORTHO05D008584 1.4e-117 428.7 499 51.7
SGA_v2.0_scaffold56G20049 Striga asiatica HOM05D006304 ORTHO05D008584 1.2e-116 425.6 445 54.6
CAN.G628.40 Capsicum annuum HOM05D006304 ORTHO05D008584 1.6e-116 425.2 555 49.0
HanXRQChr02g0045271 Helianthus annuus HOM05D006304 ORTHO05D008584 2.7e-116 424.5 525 48.8
Os02g0215000 Oryza sativa ssp. japonica HOM05D006304 ORTHO05D008584 2.7e-116 424.5 620 44.0
THA.LOC104821457 Tarenaya hassleriana HOM05D006304 ORTHO05D008584 2.7e-116 424.5 508 50.4
Eucgr.B00434 Eucalyptus grandis HOM05D006304 ORTHO05D008584 3.5e-116 424.1 446 53.6
Nitab4.5_0009895g0010 Nicotiana tabacum HOM05D006304 ORTHO05D008584 4.6e-116 423.7 527 50.9
Nitab4.5_0000269g0180 Nicotiana tabacum HOM05D006304 ORTHO05D008584 6.0e-116 423.3 532 49.6
Hund09367 Selenicereus undatus HOM05D006304 ORTHO05D008584 1.3e-115 422.2 824 39.3
Haze_07372 Corylus avellana HOM05D006304 ORTHO05D008584 2.3e-115 421.4 519 50.3
Zm00001eb240230 Zea mays HOM05D006304 ORTHO05D008584 3.9e-115 420.6 405 56.5
Actinidia19056 Actinidia chinensis HOM05D006304 ORTHO05D008584 1.1e-114 419.1 720 41.7
Manes.06G096000 Manihot esculenta HOM05D006304 ORTHO05D008584 1.1e-114 419.1 465 52.7
Sopen06g027340 Solanum pennellii HOM05D006304 ORTHO05D008584 2.5e-114 417.9 643 43.9
COL.COLO4_05911 Corchorus olitorius HOM05D006304 ORTHO05D008584 3.3e-114 417.5 472 53.2
HPP92_021789 Vanilla planifolia HOM05D006304 ORTHO05D008584 5.6e-114 416.8 749 41.1
Dinv38671 Davidia involucrata HOM05D006304 ORTHO05D008584 7.4e-114 416.4 671 42.9
Atru.chr9.2307 Acer truncatum HOM05D006304 ORTHO05D008584 1.6e-113 415.2 390 58.2
Carub.0008s2349 Capsella rubella HOM05D006304 ORTHO05D008584 6.9e-112 409.8 413 55.7
Sp2g25930 Schrenkiella parvula HOM05D006304 ORTHO05D008584 1.5e-111 408.7 463 51.6
AT5G62760 Arabidopsis thaliana HOM05D006304 ORTHO05D008584 4.5e-111 407.1 442 52.7
A06p29540 Brassica napus HOM05D006304 ORTHO05D008584 2.9e-110 404.4 396 57.6
Migut.I00131 Erythranthe guttata HOM05D006304 ORTHO05D008584 3.8e-110 404.1 714 41.6
DCAR_021535 Daucus carota HOM05D006304 ORTHO05D008584 4.9e-110 403.7 725 40.3
SalBow5G3794 Salvia bowleyana HOM05D006304 ORTHO05D008584 6.5e-110 403.3 817 37.7
AL8G39730 Arabidopsis lyrata HOM05D006304 ORTHO05D008584 1.4e-109 402.1 401 55.6
CARHR276550 Cardamine hirsuta HOM05D006304 ORTHO05D008584 5.5e-109 400.2 411 54.5
Thhalv10003777m.g Eutrema salsugineum HOM05D006304 ORTHO05D008584 7.1e-109 399.8 502 48.6
BcaB02g09690 Brassica carinata HOM05D006304 ORTHO05D008584 9.3e-109 399.4 397 56.7
BcaC01g02519 Brassica carinata HOM05D006304 ORTHO05D008584 2.1e-108 398.3 396 56.8
C03p63960 Brassica napus HOM05D006304 ORTHO05D008584 4.6e-108 397.1 397 56.9
FAN13G0685 Fragaria x ananassa HOM05D006304 ORTHO05D008584 3.9e-107 394.0 591 45.2
BraA06t25899Z Brassica rapa HOM05D006304 ORTHO05D008584 1.9e-106 391.7 420 54.3
Mapoly0068s0038 Marchantia polymorpha HOM05D006304 ORTHO05D008584 3.3e-106 391.0 498 48.8
EL10Ac5g10949 Beta vulgaris HOM05D006304 ORTHO05D008584 5.3e-104 383.6 736 40.1
unitig_0.g2536 Utricularia gibba HOM05D006304 ORTHO05D008584 1.2e-103 382.5 495 47.7
Solyc06g071040.4 Solanum lycopersicum HOM05D006304 ORTHO05D008584 1.0e-102 379.4 638 41.8
BolC3t18650H Brassica oleracea HOM05D006304 ORTHO05D008584 1.3e-102 379.0 424 53.1
ClCG01G014430 Citrullus lanatus HOM05D006304 ORTHO05D008584 1.6e-100 372.1 973 34.6
Peaxi162Scf00013g00025 Petunia axillaris HOM05D006304 ORTHO05D008584 2.7e-100 371.3 422 52.1
Lsat_1_v5_gn_1_10941 Lactuca sativa HOM05D006304 ORTHO05D008584 7.4e-98 363.2 433 49.4
Aa31LG11G920 Aethionema arabicum HOM05D006304 ORTHO05D008584 2.4e-96 358.2 445 49.2
Lalb_Chr12g0196741 Lupinus albus HOM05D006304 ORTHO05D008584 2.9e-94 351.3 253 69.6
CSS0050297 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 1.5e-90 339.0 413 48.4
PSO017G6991 Papaver somniferum HOM05D006304 ORTHO05D008584 9.1e-88 329.7 748 35.8
CBR_g5693 Chara braunii HOM05D006304 ORTHO05D008584 5.1e-83 313.9 636 37.3
Oeu006477.2 Olea europaea HOM05D006304 ORTHO05D008584 2.6e-66 258.5 571 35.7
QL10p015696 Quercus lobata HOM05D006304 ORTHO05D008584 1.2e-63 249.6 301 51.2
Duzib084G0195 Durio zibethinus HOM05D006304 ORTHO05D008584 5.9e-55 220.7 278 50.7
Cre14.g629400 Chlamydomonas reinhardtii HOM05D006304 ORTHO05D008584 2.5e-37 162.2 208 40.9
PGSC0003DMG402033036 Solanum tuberosum HOM05D006304 ORTHO05D008584 5.2e-35 154.5 320 35.3
Actinidia28212 Actinidia chinensis HOM05D006304 ORTHO05D008584 8.3e-33 147.1 167 49.1
QL10p015692 Quercus lobata HOM05D006304 ORTHO05D008584 1.7e-25 122.9 117 53.8
Lalb_Chr12g0196731 Lupinus albus HOM05D006304 ORTHO05D008584 1.0e-22 113.6 110 55.5
Dinv19922 Davidia involucrata HOM05D006304 ORTHO05D008584 2.4e-11 75.9 91 48.4
QL10p015689 Quercus lobata HOM05D006304 ORTHO05D008584 1.9e-08 66.2 86 48.8
CSS0027196 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 1.2e-07 63.5 86 45.3


User provided reference genes

Program Settings