Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1120G109 Amborella trichopoda HOM05D005136 ORTHO05D006619 1.6e-74 282.7 149 100.0
DCAR_026977 Daucus carota HOM05D005136 ORTHO05D006619 7.8e-53 210.7 149 73.8
Hund22263 Selenicereus undatus HOM05D005136 ORTHO05D006619 7.8e-53 210.7 149 76.5
Sed0024996 Sechium edule HOM05D005136 ORTHO05D006619 1.7e-52 209.5 149 74.5
Potri.004G152700 Populus trichocarpa HOM05D005136 ORTHO05D006619 3.0e-52 208.8 149 74.5
ClCG11G004520 Citrullus lanatus HOM05D005136 ORTHO05D006619 3.9e-52 208.4 149 74.5
CsaV3_2G014570 Cucumis sativus L. HOM05D005136 ORTHO05D006619 3.9e-52 208.4 149 75.2
Dinv23543 Davidia involucrata HOM05D005136 ORTHO05D006619 8.6e-52 207.2 149 73.8
Cfa005022 Carpinus fangiana HOM05D005136 ORTHO05D006619 1.5e-51 206.5 149 75.2
Haze_02365 Corylus avellana HOM05D005136 ORTHO05D006619 1.5e-51 206.5 149 75.2
Duzib132G0024 Durio zibethinus HOM05D005136 ORTHO05D006619 1.9e-51 206.1 149 75.2
QL11p043069 Quercus lobata HOM05D005136 ORTHO05D006619 1.9e-51 206.1 148 73.6
MELO3C020986.2 Cucumis melo HOM05D005136 ORTHO05D006619 4.3e-51 204.9 149 73.8
MBI16_g37741_MAGBIO Magnolia biondii HOM05D005136 ORTHO05D006619 5.6e-51 204.5 149 75.2
PSO700G0271 Papaver somniferum HOM05D005136 ORTHO05D006619 9.5e-51 203.8 149 73.8
vmacro08119 Vaccinium macrocarpon HOM05D005136 ORTHO05D006619 9.5e-51 203.8 149 73.2
Rhsim11G0174400 Rhododendron simsii HOM05D005136 ORTHO05D006619 1.2e-50 203.4 149 73.2
Cpa.g.sc31.66 Carica papaya HOM05D005136 ORTHO05D006619 1.6e-50 203.0 149 73.2
TAR625G1013 Trochodendron aralioides HOM05D005136 ORTHO05D006619 1.6e-50 203.0 149 72.5
COL.COLO4_32439 Corchorus olitorius HOM05D005136 ORTHO05D006619 2.1e-50 202.6 149 72.5
CiPaw.05G062700 Carya illinoinensis HOM05D005136 ORTHO05D006619 2.8e-50 202.2 149 72.5
PGSC0003DMG400026262 Solanum tuberosum HOM05D005136 ORTHO05D006619 2.8e-50 202.2 149 74.5
MD05G1068400 Malus domestica HOM05D005136 ORTHO05D006619 3.6e-50 201.8 149 74.5
Nitab4.5_0009564g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 3.6e-50 201.8 150 74.0
Ciclev10029521m.g Citrus clementina HOM05D005136 ORTHO05D006619 4.7e-50 201.4 149 72.5
Eucgr.G00447 Eucalyptus grandis HOM05D005136 ORTHO05D006619 4.7e-50 201.4 149 71.1
HPP92_013432 Vanilla planifolia HOM05D005136 ORTHO05D006619 4.7e-50 201.4 150 70.7
HPP92_027116 Vanilla planifolia HOM05D005136 ORTHO05D006619 4.7e-50 201.4 150 70.7
CiPaw.06G136800 Carya illinoinensis HOM05D005136 ORTHO05D006619 8.0e-50 200.7 149 71.8
Gohir.A12G017900 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.1e-49 200.3 149 72.5
Peaxi162Scf00346g00043 Petunia axillaris HOM05D005136 ORTHO05D006619 1.1e-49 200.3 149 73.2
Sopen08g026750 Solanum pennellii HOM05D005136 ORTHO05D006619 1.1e-49 200.3 149 73.8
FvH4_2g08450 Fragaria vesca HOM05D005136 ORTHO05D006619 1.4e-49 199.9 146 71.2
FAN24G0166 Fragaria x ananassa HOM05D005136 ORTHO05D006619 1.4e-49 199.9 146 71.2
Thecc.02G123900 Theobroma cacao HOM05D005136 ORTHO05D006619 1.4e-49 199.9 149 71.1
VMungo1215G0362 Vigna mungo HOM05D005136 ORTHO05D006619 1.4e-49 199.9 149 71.8
Aqoxy5G01670 Aquilegia oxysepala HOM05D005136 ORTHO05D006619 1.8e-49 199.5 152 69.7
CSS0002049 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 1.8e-49 199.5 149 73.8
CSS0016345 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 1.8e-49 199.5 149 73.8
CSS0049550 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 1.8e-49 199.5 149 73.8
MD10G1078600 Malus domestica HOM05D005136 ORTHO05D006619 1.8e-49 199.5 149 73.8
Lj5P199T42 Lonicera japonica HOM05D005136 ORTHO05D006619 2.3e-49 199.1 149 71.1
FAN15G2434 Fragaria x ananassa HOM05D005136 ORTHO05D006619 3.1e-49 198.7 146 70.5
Gohir.D12G018500 Gossypium hirsutum HOM05D005136 ORTHO05D006619 3.1e-49 198.7 149 71.8
Gorai.008G018800 Gossypium raimondii HOM05D005136 ORTHO05D006619 3.1e-49 198.7 149 71.8
Manes.17G099700 Manihot esculenta HOM05D005136 ORTHO05D006619 3.1e-49 198.7 149 71.8
RcHm_v2.0_Chr6g0263731 Rosa chinensis HOM05D005136 ORTHO05D006619 3.1e-49 198.7 146 72.6
TAR628G0554 Trochodendron aralioides HOM05D005136 ORTHO05D006619 3.1e-49 198.7 149 70.5
TAR628G1226 Trochodendron aralioides HOM05D005136 ORTHO05D006619 3.1e-49 198.7 149 70.5
Phvul.002G127500 Phaseolus vulgaris HOM05D005136 ORTHO05D006619 4.0e-49 198.4 149 71.8
FAN27G1698 Fragaria x ananassa HOM05D005136 ORTHO05D006619 5.2e-49 198.0 146 70.5
Glyma.04G123300 Glycine max HOM05D005136 ORTHO05D006619 6.8e-49 197.6 149 71.1
Nn1g02125 Nelumbo nucifera HOM05D005136 ORTHO05D006619 6.8e-49 197.6 146 69.9
Sc09g0004050 Simmondsia chinensis HOM05D005136 ORTHO05D006619 6.8e-49 197.6 151 71.5
Cc02_g17760 Coffea canephora HOM05D005136 ORTHO05D006619 8.9e-49 197.2 149 71.1
Cc02_g20820 Coffea canephora HOM05D005136 ORTHO05D006619 8.9e-49 197.2 149 71.1
Migut.B00252 Erythranthe guttata HOM05D005136 ORTHO05D006619 8.9e-49 197.2 149 69.8
Solyc08g078240.4 Solanum lycopersicum HOM05D005136 ORTHO05D006619 1.2e-48 196.8 146 73.3
Atru.chr8.1229 Acer truncatum HOM05D005136 ORTHO05D006619 1.5e-48 196.4 149 71.1
CSS0025161 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 3.4e-48 195.3 149 72.5
CAN.G1312.12 Capsicum annuum HOM05D005136 ORTHO05D006619 3.4e-48 195.3 149 71.8
Dinv42084 Davidia involucrata HOM05D005136 ORTHO05D006619 1.3e-47 193.4 149 69.8
SalBow6G6037 Salvia bowleyana HOM05D005136 ORTHO05D006619 2.2e-47 192.6 149 69.1
SGA_v2.0_scaffold106G30693 Striga asiatica HOM05D005136 ORTHO05D006619 2.2e-47 192.6 149 69.8
Ah.01g016850 Amaranthus hybridus HOM05D005136 ORTHO05D006619 2.9e-47 192.2 149 70.5
Lsat_1_v5_gn_7_89621 Lactuca sativa HOM05D005136 ORTHO05D006619 1.1e-46 190.3 149 67.8
Lj3g0003138 Lotus japonicus HOM05D005136 ORTHO05D006619 1.4e-46 189.9 150 71.3
HanXRQChr05g0152051 Helianthus annuus HOM05D005136 ORTHO05D006619 2.4e-46 189.1 149 68.5
Oeu014338.1 Olea europaea HOM05D005136 ORTHO05D006619 2.4e-46 189.1 149 67.8
Prupe.8G100500 Prunus persica HOM05D005136 ORTHO05D006619 2.4e-46 189.1 149 71.8
MSTRG.16796 Avicennia marina HOM05D005136 ORTHO05D006619 3.2e-46 188.7 149 68.5
CANSAT11G0677 Cannabis sativa HOM05D005136 ORTHO05D006619 5.4e-46 188.0 156 66.7
Hma1.2p1_1375F.1_g278970 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 5.4e-46 188.0 152 69.7
Hma1.2p1_3179F.1_g333696 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 5.4e-46 188.0 152 69.7
Nn1g05055 Nelumbo nucifera HOM05D005136 ORTHO05D006619 5.4e-46 188.0 149 69.1
Medtr3g116260 Medicago truncatula HOM05D005136 ORTHO05D006619 7.0e-46 187.6 149 67.1
TWI31G0294 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 9.2e-46 187.2 151 71.5
Lalb_Chr19g0138591 Lupinus albus HOM05D005136 ORTHO05D006619 1.2e-45 186.8 146 67.8
TWI79G0765 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 2.0e-45 186.0 153 68.6
Ca_15377_v3 Cicer arietinum L. HOM05D005136 ORTHO05D006619 3.5e-45 185.3 149 67.8
Psat5g103000 Pisum sativum HOM05D005136 ORTHO05D006619 1.0e-44 183.7 149 68.5
Aa31LG1G2990 Aethionema arabicum HOM05D005136 ORTHO05D006619 1.7e-44 183.0 152 65.8
Psat5g007800 Pisum sativum HOM05D005136 ORTHO05D006619 1.7e-44 183.0 149 67.8
AUR62038311 Chenopodium quinoa HOM05D005136 ORTHO05D006619 5.0e-44 181.4 149 66.4
PGR042G3747 Punica granatum HOM05D005136 ORTHO05D006619 5.0e-44 181.4 149 66.4
AL1G22940 Arabidopsis lyrata HOM05D005136 ORTHO05D006619 8.6e-44 180.6 157 65.6
Glyma.09G214900 Glycine max HOM05D005136 ORTHO05D006619 8.6e-44 180.6 141 68.8
BcaB03g13232 Brassica carinata HOM05D005136 ORTHO05D006619 1.1e-43 180.3 154 64.9
Lalb_Chr23g0265461 Lupinus albus HOM05D005136 ORTHO05D006619 1.1e-43 180.3 149 63.8
THA.LOC104823526 Tarenaya hassleriana HOM05D005136 ORTHO05D006619 1.1e-43 180.3 153 64.1
AUR62023928 Chenopodium quinoa HOM05D005136 ORTHO05D006619 2.5e-43 179.1 149 65.1
Gorai.005G228100 Gossypium raimondii HOM05D005136 ORTHO05D006619 7.3e-43 177.6 149 64.4
CARHR012080 Cardamine hirsuta HOM05D005136 ORTHO05D006619 9.5e-43 177.2 155 64.5
Gohir.D02G202838 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.2e-42 176.8 149 64.4
EL10Ac9g21088 Beta vulgaris HOM05D005136 ORTHO05D006619 1.6e-42 176.4 140 70.0
Thhalv10008721m.g Eutrema salsugineum HOM05D005136 ORTHO05D006619 1.6e-42 176.4 160 65.0
Sp1g10380 Schrenkiella parvula HOM05D005136 ORTHO05D006619 1.6e-42 176.4 156 66.7
AT1G11760 Arabidopsis thaliana HOM05D005136 ORTHO05D006619 2.1e-42 176.0 157 63.7
Gohir.A03G179300 Gossypium hirsutum HOM05D005136 ORTHO05D006619 3.6e-42 175.3 149 63.8
Os10g0548400 Oryza sativa ssp. japonica HOM05D005136 ORTHO05D006619 3.6e-42 175.3 163 59.5
Carub.0001s1142 Capsella rubella HOM05D005136 ORTHO05D006619 3.1e-41 172.2 157 60.5
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 1.2e-40 170.2 149 62.4
unitig_37.g12818 Utricularia gibba HOM05D005136 ORTHO05D006619 1.2e-40 170.2 152 61.8
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 2.0e-40 169.5 149 62.4
Zm00001eb284000 Zea mays HOM05D005136 ORTHO05D006619 4.9e-39 164.9 150 61.3
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 1.6e-37 159.8 137 62.0
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 1.6e-37 159.8 137 62.0
Actinidia00512 Actinidia chinensis HOM05D005136 ORTHO05D006619 3.5e-37 158.7 115 71.3
PSO170G5319 Papaver somniferum HOM05D005136 ORTHO05D006619 4.6e-37 158.3 114 75.4
ECA236G0931 Erigeron canadensis HOM05D005136 ORTHO05D006619 3.9e-36 155.2 150 59.3
CSS0021040 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 5.6e-35 151.4 142 62.7
Prupe.5G020100 Prunus persica HOM05D005136 ORTHO05D006619 4.7e-34 148.3 150 55.3
Nitab4.5_0002601g0030 Nicotiana tabacum HOM05D005136 ORTHO05D006619 3.1e-33 145.6 109 72.5
SalBow6G1117 Salvia bowleyana HOM05D005136 ORTHO05D006619 4.4e-32 141.7 105 69.5
TPR.G21542 Trifolium pratense HOM05D005136 ORTHO05D006619 6.4e-31 137.9 149 55.7
BcaB08g37416 Brassica carinata HOM05D005136 ORTHO05D006619 1.9e-30 136.3 149 56.4
RcHm_v2.0_Chr6g0264001 Rosa chinensis HOM05D005136 ORTHO05D006619 9.2e-30 134.0 100 67.0
SHI23962 Sapria himalayana HOM05D005136 ORTHO05D006619 9.2e-30 134.0 137 56.9
EL10Ac7g17776 Beta vulgaris HOM05D005136 ORTHO05D006619 1.5e-27 126.7 145 52.4
CDE02G3080 Ceratophyllum demersum HOM05D005136 ORTHO05D006619 5.6e-27 124.8 79 77.2
SMO174G0113 Selaginella moellendorffii HOM05D005136 ORTHO05D006619 7.3e-27 124.4 128 50.8
Mapoly0003s0019 Marchantia polymorpha HOM05D005136 ORTHO05D006619 1.4e-25 120.2 128 50.8
Atru.chr5.2947 Acer truncatum HOM05D005136 ORTHO05D006619 3.1e-25 119.0 85 72.9
Pp3c10_12480 Physcomitrium patens HOM05D005136 ORTHO05D006619 9.9e-24 114.0 155 44.5
EL10Ac8g18726 Beta vulgaris HOM05D006015 ORTHO05D007816 1.4e-22 110.2 103 58.3
EL10Ac9g21097 Beta vulgaris HOM05D006015 ORTHO05D006619 4.2e-22 108.6 103 57.3
Medtr3g116310 Medicago truncatula HOM05D005136 ORTHO05D006619 8.1e-18 94.4 78 61.5
Oeu014337.1 Olea europaea HOM05D005136 ORTHO05D006619 1.8e-17 93.2 79 51.9
EL10Ac1g02225 Beta vulgaris HOM05D005136 ORTHO05D006619 3.1e-17 92.4 166 39.8
AagrBONN_evm.TU.Sc2ySwM_369.532 Anthoceros agrestis HOM05D005136 ORTHO05D006619 5.3e-17 91.7 150 40.0
Psat4g095600 Pisum sativum HOM05D005136 ORTHO05D006619 5.3e-17 91.7 79 57.0
Sp2g23220 Schrenkiella parvula HOM05D005136 ORTHO05D006619 5.8e-16 88.2 85 55.3
Hma1.2p1_0854F.1_g228935 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 1.7e-15 86.7 71 59.2
Hma1.2p1_2665F.1_g326510 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 1.7e-15 86.7 71 59.2
Gohir.A03G179400 Gossypium hirsutum HOM05D005136 ORTHO05D006619 4.9e-15 85.1 69 59.4
Gorai.005G228200 Gossypium raimondii HOM05D005136 ORTHO05D006619 6.4e-15 84.7 69 59.4
Gohir.D02G202857 Gossypium hirsutum HOM05D005136 ORTHO05D006619 8.4e-15 84.3 69 58.0
Lj4g0027023 Lotus japonicus HOM05D005136 ORTHO05D006619 2.7e-13 79.3 147 39.5
COL.COLO4_32440 Corchorus olitorius HOM05D005136 ORTHO05D006619 4.6e-13 78.6 69 49.3
Thecc.02G123800 Theobroma cacao HOM05D005136 ORTHO05D006619 6.0e-13 78.2 71 52.1
Sc09g0004030 Simmondsia chinensis HOM05D005136 ORTHO05D006619 1.0e-12 77.4 149 39.6
Os07g0229100 Oryza sativa ssp. japonica HOM05D011003 ORTHO05D012370 1.9e-11 73.2 132 35.6
Nitab4.5_0002541g0070 Nicotiana tabacum HOM05D005136 ORTHO05D024799 2.4e-09 66.2 72 44.4
CAN.G1435.13 Capsicum annuum HOM05D005136 ORTHO05D024799 1.5e-08 63.5 89 38.2
Solyc09g082750.1 Solanum lycopersicum HOM05D005136 ORTHO05D024799 2.2e-07 59.7 72 41.7
ECA233G0803 Erigeron canadensis HOM05D005136 ORTHO05D006619 8.4e-07 57.8 120 38.3
Peaxi162Scf00316g00313 Petunia axillaris HOM05D005136 ORTHO05D006619 1.9e-06 56.6 51 54.9
HPP92_014777 Vanilla planifolia HOM05D005136 ORTHO05D006619 1.9e-06 56.6 72 43.1


User provided reference genes

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