Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1120G073 Amborella trichopoda HOM05D006315 ORTHO05D008052 3.4e-190 668.3 369 100.0
Nn6g32180 Nelumbo nucifera HOM05D006315 ORTHO05D008052 1.4e-122 443.7 258 83.3
TAR381G0108 Trochodendron aralioides HOM05D006315 ORTHO05D008052 7.4e-121 438.0 256 82.8
QL03p006996 Quercus lobata HOM05D006315 ORTHO05D008052 9.7e-121 437.6 257 82.9
Cpa.g.sc48.53 Carica papaya HOM05D006315 ORTHO05D008052 1.1e-119 434.1 255 83.1
MBI01_g44539_MAGBIO Magnolia biondii HOM05D006315 ORTHO05D008052 1.4e-119 433.7 255 82.0
Eucgr.B01969 Eucalyptus grandis HOM05D006315 ORTHO05D008052 2.4e-119 433.0 258 81.4
Dinv40287 Davidia involucrata HOM05D006315 ORTHO05D008052 5.3e-119 431.8 256 82.4
Manes.09G167100 Manihot esculenta HOM05D006315 ORTHO05D008052 5.3e-119 431.8 258 82.9
PGR083G2010 Punica granatum HOM05D006315 ORTHO05D008052 5.3e-119 431.8 258 82.2
COL.COLO4_13471 Corchorus olitorius HOM05D006315 ORTHO05D008052 9.1e-119 431.0 258 81.0
GSVIVG01000051001 Vitis vinifera HOM05D006315 ORTHO05D008052 2.6e-118 429.5 258 81.8
RhsimUnG0225800 Rhododendron simsii HOM05D006315 ORTHO05D008052 3.4e-118 429.1 258 80.6
Actinidia05703 Actinidia chinensis HOM05D006315 ORTHO05D008052 4.5e-118 428.7 258 80.2
Duzib128G1131 Durio zibethinus HOM05D006315 ORTHO05D008052 4.5e-118 428.7 256 82.4
Prupe.6G325900 Prunus persica HOM05D006315 ORTHO05D008052 1.0e-117 427.6 258 81.0
CSS0039769 Camellia sinensis var. sinensis HOM05D006315 ORTHO05D008052 2.2e-117 426.4 258 79.5
vmacro05019 Vaccinium macrocarpon HOM05D006315 ORTHO05D008052 2.9e-117 426.0 255 80.4
Ciclev10001688m.g Citrus clementina HOM05D006315 ORTHO05D008052 3.8e-117 425.6 257 80.2
Aqoxy6G00442 Aquilegia oxysepala HOM05D006315 ORTHO05D008052 8.5e-117 424.5 256 80.5
ECA236G1566 Erigeron canadensis HOM05D006315 ORTHO05D008052 8.5e-117 424.5 258 78.3
CiPaw.07G017800 Carya illinoinensis HOM05D006315 ORTHO05D008052 1.1e-116 424.1 345 66.1
FvH4_6g05840 Fragaria vesca HOM05D006315 ORTHO05D008052 1.4e-116 423.7 258 79.5
Sabra13G0023200 Salix brachista HOM05D006315 ORTHO05D008052 1.4e-116 423.7 258 79.8
Gohir.D11G275200 Gossypium hirsutum HOM05D006315 ORTHO05D008052 1.9e-116 423.3 258 79.8
Gorai.007G297000 Gossypium raimondii HOM05D006315 ORTHO05D008052 1.9e-116 423.3 258 79.8
Potri.013G020800 Populus trichocarpa HOM05D006315 ORTHO05D008052 2.5e-116 422.9 258 80.2
Thecc.05G303200 Theobroma cacao HOM05D006315 ORTHO05D008052 3.2e-116 422.5 258 79.1
FAN02G1008 Fragaria x ananassa HOM05D006315 ORTHO05D008052 4.2e-116 422.2 258 79.1
HanXRQChr02g0046151 Helianthus annuus HOM05D006315 ORTHO05D008052 4.2e-116 422.2 258 78.7
RcHm_v2.0_Chr3g0454751 Rosa chinensis HOM05D006315 ORTHO05D008052 7.2e-116 421.4 258 78.3
THA.LOC104818698 Tarenaya hassleriana HOM05D006315 ORTHO05D008052 9.4e-116 421.0 258 80.6
CAN.G1034.11 Capsicum annuum HOM05D006315 ORTHO05D008052 1.2e-115 420.6 309 68.6
FAN09G2245 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.6e-115 420.2 346 63.9
PGSC0003DMG400018995 Solanum tuberosum HOM05D006315 ORTHO05D008052 2.7e-115 419.5 313 67.7
Cfa006589 Carpinus fangiana HOM05D006315 ORTHO05D008052 3.6e-115 419.1 258 80.6
Lsat_1_v5_gn_9_86000 Lactuca sativa HOM05D006315 ORTHO05D008052 7.9e-115 417.9 352 62.2
MD12G1219300 Malus domestica HOM05D006315 ORTHO05D008052 7.9e-115 417.9 258 79.1
FAN05G4943 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.4e-114 417.2 258 78.3
FAN14G1304 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.8e-114 416.8 265 77.4
FAN14G3373 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.8e-114 416.8 265 77.4
TWI36G1375 Tripterygium wilfordii HOM05D006315 ORTHO05D008052 1.8e-114 416.8 256 78.5
Sopen01g042560 Solanum pennellii HOM05D006315 ORTHO05D008052 6.7e-114 414.8 307 68.4
Cc02_g33440 Coffea canephora HOM05D006315 ORTHO05D008052 1.1e-113 414.1 311 67.5
Oeu020852.1 Olea europaea HOM05D006315 ORTHO05D008052 2.6e-113 412.9 347 62.8
AUR62000828 Chenopodium quinoa HOM05D006315 ORTHO05D008052 5.7e-113 411.8 323 65.3
PSO675G8687 Papaver somniferum HOM05D006315 ORTHO05D008052 5.7e-113 411.8 354 62.4
Peaxi162Scf00037g00325 Petunia axillaris HOM05D006315 ORTHO05D008052 5.7e-113 411.8 304 71.1
Sc06g0003310 Simmondsia chinensis HOM05D006315 ORTHO05D008052 1.3e-112 410.6 258 78.7
AL6G39450 Arabidopsis lyrata HOM05D006315 ORTHO05D008052 3.7e-112 409.1 255 75.7
Aa31LG11G9300 Aethionema arabicum HOM05D006315 ORTHO05D008052 4.8e-112 408.7 255 76.1
Sp2g20750 Schrenkiella parvula HOM05D006315 ORTHO05D008052 1.4e-111 407.1 255 75.3
Nitab4.5_0004395g0040 Nicotiana tabacum HOM05D006315 ORTHO05D008052 2.0e-110 403.3 253 77.9
Thhalv10004542m.g Eutrema salsugineum HOM05D006315 ORTHO05D008052 2.6e-110 402.9 255 74.1
Lalb_Chr02g0148251 Lupinus albus HOM05D006315 ORTHO05D008052 4.5e-110 402.1 255 76.1
C09p05830 Brassica napus HOM05D006315 ORTHO05D008052 5.9e-110 401.7 253 75.1
BolC9t53510H Brassica oleracea HOM05D006315 ORTHO05D008052 5.9e-110 401.7 253 75.1
FAN05G5779 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.0e-109 401.0 278 71.9
Carub.0006s2500 Capsella rubella HOM05D006315 ORTHO05D008052 1.3e-109 400.6 256 74.2
CARHR186120 Cardamine hirsuta HOM05D006315 ORTHO05D008052 1.3e-109 400.6 255 74.5
A09p05350 Brassica napus HOM05D006315 ORTHO05D008052 1.7e-109 400.2 253 74.7
BraA09t36173Z Brassica rapa HOM05D006315 ORTHO05D008052 1.7e-109 400.2 253 74.7
Ah.06g189370 Amaranthus hybridus HOM05D006315 ORTHO05D008052 3.8e-109 399.1 249 77.5
CDE06G2073 Ceratophyllum demersum HOM05D006315 ORTHO05D008052 3.8e-109 399.1 294 66.0
ClCG02G015800 Citrullus lanatus HOM05D006315 ORTHO05D008052 5.0e-109 398.7 258 76.7
SalBow8G0023 Salvia bowleyana HOM05D006315 ORTHO05D008052 6.5e-109 398.3 262 74.8
AUR62005146 Chenopodium quinoa HOM05D006315 ORTHO05D008052 2.5e-108 396.4 293 67.9
PSO541G4223 Papaver somniferum HOM05D006315 ORTHO05D008052 4.2e-108 395.6 298 68.5
Phvul.007G180000 Phaseolus vulgaris HOM05D006315 ORTHO05D008052 4.2e-108 395.6 255 73.7
AT5G27560 Arabidopsis thaliana HOM05D006315 ORTHO05D008052 5.5e-108 395.2 245 75.9
DCAR_022164 Daucus carota HOM05D006315 ORTHO05D008052 2.7e-107 392.9 258 72.5
CsaV3_2G005300 Cucumis sativus L. HOM05D006315 ORTHO05D008052 3.6e-107 392.5 258 75.2
Glyma.10G154300 Glycine max HOM05D006315 ORTHO05D008052 8.0e-107 391.3 347 61.7
VMungo0720G2927 Vigna mungo HOM05D006315 ORTHO05D008052 1.0e-106 391.0 255 72.5
Glyma.20G234000 Glycine max HOM05D006315 ORTHO05D008052 1.4e-106 390.6 256 74.6
unitig_37.g12631 Utricularia gibba HOM05D006315 ORTHO05D008052 2.3e-106 389.8 258 75.2
MSTRG.16964 Avicennia marina HOM05D006315 ORTHO05D008052 5.2e-106 388.7 258 74.8
Sed0013855 Sechium edule HOM05D006315 ORTHO05D008052 1.5e-105 387.1 255 74.5
arahy.Tifrunner.gnm1.ann1.9IE074 Arachis hypogaea HOM05D006315 ORTHO05D008052 2.6e-105 386.3 255 74.5
Migut.B01035 Erythranthe guttata HOM05D006315 ORTHO05D008052 5.7e-105 385.2 258 73.6
Lj5g0002172 Lotus japonicus HOM05D006315 ORTHO05D008052 1.3e-104 384.0 252 72.2
Ca_10111_v3 Cicer arietinum L. HOM05D006315 ORTHO05D008052 6.3e-104 381.7 256 73.0
TPR.G6112 Trifolium pratense HOM05D006315 ORTHO05D008052 8.2e-104 381.3 256 72.3
Psat6g151200 Pisum sativum HOM05D006315 ORTHO05D008052 2.4e-103 379.8 256 71.5
Gohir.A11G265000 Gossypium hirsutum HOM05D006315 ORTHO05D008052 4.1e-103 379.0 229 79.5
Medtr1g082900 Medicago truncatula HOM05D006315 ORTHO05D008052 1.2e-102 377.5 305 66.9
Hund07070 Selenicereus undatus HOM05D006315 ORTHO05D008052 1.6e-102 377.1 256 73.4
SGA_v2.0_scaffold13G06358 Striga asiatica HOM05D006315 ORTHO05D008052 6.1e-99 365.2 222 79.7
Solyc01g098990.4 Solanum lycopersicum HOM05D006315 ORTHO05D008052 8.0e-99 364.8 225 77.8
MELO3C004257.2 Cucumis melo HOM05D006315 ORTHO05D008052 5.7e-97 358.6 224 77.2
Atru.chr2.406 Acer truncatum HOM05D006315 ORTHO05D008052 4.8e-96 355.5 359 62.1
SEGI_29864 Sequoiadendron giganteum HOM05D006315 ORTHO05D008052 2.4e-95 353.2 259 66.4
Haze_04196 Corylus avellana HOM05D006315 ORTHO05D008052 2.1e-91 340.1 258 69.8
EL10Ac4g09351 Beta vulgaris HOM05D006315 ORTHO05D008052 3.6e-83 312.8 215 72.6
AagrBONN_evm.TU.Sc2ySwM_368.1535 Anthoceros agrestis HOM05D006315 ORTHO05D008052 3.4e-81 306.2 254 59.8
Zm00001eb377150 Zea mays HOM05D006315 ORTHO05D008052 8.6e-77 291.6 255 59.6
Mapoly0046s0092 Marchantia polymorpha HOM05D006315 ORTHO05D008052 7.3e-76 288.5 265 53.6
Pp3c1_23410 Physcomitrium patens HOM05D006315 ORTHO05D008052 1.6e-75 287.3 261 53.3
arahy.Tifrunner.gnm1.ann1.SMKB8G Arachis hypogaea HOM05D006315 ORTHO05D008052 2.0e-73 280.4 262 59.2
Nitab4.5_0000137g0320 Nicotiana tabacum HOM05D006315 ORTHO05D008052 2.0e-73 280.4 173 76.3
Lj5A533G15 Lonicera japonica HOM05D006315 ORTHO05D008052 2.4e-71 273.5 162 80.2
Eucgr.B01970 Eucalyptus grandis HOM05D006315 ORTHO05D008052 8.6e-69 265.0 187 67.9
Eucgr.B01875 Eucalyptus grandis HOM05D006315 ORTHO05D008052 3.1e-66 256.5 144 84.0
SMO116G0320 Selaginella moellendorffii HOM05D006315 ORTHO05D008052 1.9e-60 237.3 219 50.2
HPP92_002820 Vanilla planifolia HOM05D006315 ORTHO05D008052 1.1e-52 211.5 137 77.4
HPP92_002878 Vanilla planifolia HOM05D006315 ORTHO05D008052 4.7e-51 206.1 132 78.0
Actinidia23634 Actinidia chinensis HOM05D006315 ORTHO05D008052 4.4e-49 199.5 131 76.3
Lj5C470G0 Lonicera japonica HOM05D006315 ORTHO05D008052 9.9e-49 198.4 125 76.8
Lj5C532G5 Lonicera japonica HOM05D006315 ORTHO05D008052 9.9e-49 198.4 125 76.8
Cre17.g739550 Chlamydomonas reinhardtii HOM05D006315 ORTHO05D008052 1.3e-43 181.4 285 38.2
MCO15G525 Micromonas commoda HOM05D006315 ORTHO05D008052 2.0e-41 174.1 250 39.2
PRCOL_00006277 Prasinoderma coloniale HOM05D006315 ORTHO05D008052 1.7e-32 144.4 238 38.2
EL10As4g23462 Beta vulgaris HOM05D006315 ORTHO05D008052 5.1e-29 132.9 107 68.2
Hma1.2p1_0928F.1_g237790 Hydrangea macrophylla HOM05D006315 ORTHO05D008052 4.2e-23 113.2 73 78.1
Aa31LG11G9280 Aethionema arabicum HOM05D006315 ORTHO05D059511 1.0e-21 108.6 92 58.7
Lj5P469T8 Lonicera japonica HOM05D006315 ORTHO05D008052 1.5e-20 104.8 53 88.7
Lj5P531T4 Lonicera japonica HOM05D006315 ORTHO05D008052 5.7e-20 102.8 83 60.2
Lj5A532G12 Lonicera japonica HOM05D006315 ORTHO05D008052 4.1e-18 96.7 201 36.3
arahy.Tifrunner.gnm1.ann1.T3AGRQ Arachis hypogaea HOM05D006315 ORTHO05D008052 3.5e-14 83.6 65 58.5
Lj5A470G9 Lonicera japonica HOM05D006315 ORTHO05D008052 8.2e-11 72.4 129 38.0
BolC7t42010H Brassica oleracea HOM05D004896 ORTHO05D028223 2.0e-09 67.8 114 42.1
Lj5A532G11 Lonicera japonica HOM05D006315 ORTHO05D008052 2.0e-09 67.8 129 36.4
PGR042G3955 Punica granatum HOM05D001237 ORTHO05D009110 1.7e-08 64.7 256 26.6
EL10Ac4g09000 Beta vulgaris HOM05D006315 ORTHO05D008052 6.5e-08 62.8 38 78.9
C09p41080 Brassica napus HOM05D004896 ORTHO05D028223 6.5e-08 62.8 39 71.8
BolC9t56987H Brassica oleracea HOM05D004896 ORTHO05D028223 6.5e-08 62.8 39 71.8
EL10Ac5g11946 Beta vulgaris HOM05D001237 ORTHO05D009110 5.5e-07 59.7 254 26.0
HPP92_002889 Vanilla planifolia HOM05D006315 ORTHO05D008052 5.5e-07 59.7 34 70.6
RcHm_v2.0_Chr7g0213081 Rosa chinensis HOM05D001237 ORTHO05D009110 7.2e-07 59.3 254 26.4
Prupe.5G022700 Prunus persica HOM05D001237 ORTHO05D009110 9.4e-07 58.9 255 25.9
Eucgr.E01249 Eucalyptus grandis HOM05D001237 ORTHO05D009110 1.2e-06 58.5 256 25.0
FAN08G1241 Fragaria x ananassa HOM05D001237 ORTHO05D009110 1.6e-06 58.2 254 26.4
Oeu038592.1 Olea europaea HOM05D001237 ORTHO05D009110 1.6e-06 58.2 254 26.0
FvH4_5g23760 Fragaria vesca HOM05D001237 ORTHO05D009110 2.1e-06 57.8 254 26.0
FAN18G4185 Fragaria x ananassa HOM05D001237 ORTHO05D009110 2.1e-06 57.8 254 26.0
FAN18G3541 Fragaria x ananassa HOM05D001237 ORTHO05D009110 3.6e-06 57.0 254 26.0
Thecc.03G315000 Theobroma cacao HOM05D001237 ORTHO05D009110 6.1e-06 56.2 258 24.0
CiPaw.12G070700 Carya illinoinensis HOM05D001237 ORTHO05D009110 7.9e-06 55.8 256 25.8


User provided reference genes

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