Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1120G070 Amborella trichopoda HOM05D006858 ORTHO05D008767 8.9e-166 588.2 649 100.0
ATR0043G025 Amborella trichopoda HOM05D006858 ORTHO05D008767 3.2e-30 137.9 155 92.3
Nn4g22909 Nelumbo nucifera HOM05D006858 ORTHO05D008767 6.3e-18 97.1 159 40.9
Aqoxy6G01416 Aquilegia oxysepala HOM05D006858 ORTHO05D008767 1.4e-17 95.9 159 38.4
Duzib132G0284 Durio zibethinus HOM05D006858 ORTHO05D008767 3.1e-17 94.7 174 37.9
TWI31G0517 Tripterygium wilfordii HOM05D006858 ORTHO05D008767 9.0e-17 93.2 159 38.4
AUR62011433 Chenopodium quinoa HOM05D006858 ORTHO05D008767 1.5e-16 92.4 166 37.3
COL.COLO4_32688 Corchorus olitorius HOM05D006858 ORTHO05D008767 2.0e-16 92.0 159 38.4
TAR628G1172 Trochodendron aralioides HOM05D006858 ORTHO05D008767 2.0e-16 92.0 209 34.9
CiPaw.06G142100 Carya illinoinensis HOM05D006858 ORTHO05D008767 1.0e-15 89.7 159 37.1
Manes.17G093600 Manihot esculenta HOM05D006858 ORTHO05D008767 1.0e-15 89.7 159 38.4
Thecc.02G097300 Theobroma cacao HOM05D006858 ORTHO05D008767 2.9e-15 88.2 160 37.5
QL11p037400 Quercus lobata HOM05D006858 ORTHO05D008767 3.8e-15 87.8 182 36.3
Sp7g02300 Schrenkiella parvula HOM05D006858 ORTHO05D008767 5.0e-15 87.4 160 37.5
CDE09G0572 Ceratophyllum demersum HOM05D006858 ORTHO05D008767 6.5e-15 87.0 56 66.1
BolC4t26195H Brassica oleracea HOM05D006858 ORTHO05D008767 1.4e-14 85.9 160 36.2
DCAR_022059 Daucus carota HOM05D006858 ORTHO05D008767 1.4e-14 85.9 159 35.2
SHI05381 Sapria himalayana HOM05D006858 ORTHO05D008767 1.4e-14 85.9 164 35.4
Sed0026070 Sechium edule HOM05D006858 ORTHO05D008767 1.4e-14 85.9 160 38.1
CARHR262550 Cardamine hirsuta HOM05D006858 ORTHO05D008767 1.9e-14 85.5 160 36.9
FAN24G1409 Fragaria x ananassa HOM05D006858 ORTHO05D008767 1.9e-14 85.5 184 33.7
RcHm_v2.0_Chr6g0258901 Rosa chinensis HOM05D006858 ORTHO05D008767 1.9e-14 85.5 188 34.0
Aa31LG9G16400 Aethionema arabicum HOM05D006858 ORTHO05D008767 2.5e-14 85.1 160 36.9
AT5G39710 Arabidopsis thaliana HOM05D006858 ORTHO05D008767 2.5e-14 85.1 160 36.2
BraA04t16905Z Brassica rapa HOM05D006858 ORTHO05D008767 2.5e-14 85.1 159 35.2
FvH4_2g06720 Fragaria vesca HOM05D006858 ORTHO05D008767 2.5e-14 85.1 184 33.7
PGR142G0738 Punica granatum HOM05D006858 ORTHO05D008767 2.5e-14 85.1 54 68.5
Sc08g0000040 Simmondsia chinensis HOM05D006858 ORTHO05D008767 2.5e-14 85.1 159 35.2
FAN15G2218 Fragaria x ananassa HOM05D006858 ORTHO05D008767 5.5e-14 84.0 184 33.2
FAN20G2333 Fragaria x ananassa HOM05D006858 ORTHO05D008767 5.5e-14 84.0 184 33.7
arahy.Tifrunner.gnm1.ann1.U9N0YZ Arachis hypogaea HOM05D006858 ORTHO05D008767 7.2e-14 83.6 140 37.9
A04p12420 Brassica napus HOM05D006858 ORTHO05D008767 7.2e-14 83.6 159 34.6
Cpa.g.sc62.38 Carica papaya HOM05D006858 ORTHO05D008767 7.2e-14 83.6 156 37.2
ECA234G1772 Erigeron canadensis HOM05D006858 ORTHO05D008767 7.2e-14 83.6 181 35.4
Actinidia17852 Actinidia chinensis HOM05D006858 ORTHO05D008767 9.3e-14 83.2 160 33.1
AL7G50600 Arabidopsis lyrata HOM05D006858 ORTHO05D008767 9.3e-14 83.2 160 37.5
BcaB06g27361 Brassica carinata HOM05D006858 ORTHO05D008767 9.3e-14 83.2 160 34.4
C04p46110 Brassica napus HOM05D006858 ORTHO05D008767 9.3e-14 83.2 160 35.0
CANSAT25G3187 Cannabis sativa HOM05D006858 ORTHO05D008767 9.3e-14 83.2 160 37.5
THA.LOC104804370 Tarenaya hassleriana HOM05D006858 ORTHO05D008767 9.3e-14 83.2 159 37.7
Lsat_1_v5_gn_5_113361 Lactuca sativa HOM05D006858 ORTHO05D008767 1.2e-13 82.8 159 35.8
Haze_01905 Corylus avellana HOM05D006858 ORTHO05D008767 1.6e-13 82.4 185 31.9
Gohir.D02G212500 Gossypium hirsutum HOM05D006858 ORTHO05D008767 1.6e-13 82.4 53 69.8
Gorai.005G240500 Gossypium raimondii HOM05D006858 ORTHO05D008767 1.6e-13 82.4 53 69.8
TPR.G11140 Trifolium pratense HOM05D006858 ORTHO05D008767 1.6e-13 82.4 162 37.7
vmacro13394 Vaccinium macrocarpon HOM05D006858 ORTHO05D008767 1.6e-13 82.4 155 34.2
arahy.Tifrunner.gnm1.ann1.3PJ361 Arachis hypogaea HOM05D006858 ORTHO05D008767 2.7e-13 81.6 139 37.4
Thhalv10027654m.g Eutrema salsugineum HOM05D006858 ORTHO05D008767 3.6e-13 81.3 160 36.9
Prupe.7G039700 Prunus persica HOM05D006858 ORTHO05D008767 3.6e-13 81.3 185 33.0
GSVIVG01031787001 Vitis vinifera HOM05D006858 ORTHO05D008767 3.6e-13 81.3 53 71.7
Ah.01g020130 Amaranthus hybridus HOM05D006858 ORTHO05D008767 4.6e-13 80.9 166 34.9
MD10G1090200 Malus domestica HOM05D006858 ORTHO05D008767 4.6e-13 80.9 159 35.2
Atru.chr5.2775 Acer truncatum HOM05D006858 ORTHO05D008767 6.1e-13 80.5 162 35.8
CSS0006454 Camellia sinensis var. sinensis HOM05D006858 ORTHO05D008767 6.1e-13 80.5 168 35.1
CSS0049463 Camellia sinensis var. sinensis HOM05D006858 ORTHO05D008767 6.1e-13 80.5 168 35.1
Gohir.A03G191600 Gossypium hirsutum HOM05D006858 ORTHO05D008767 6.1e-13 80.5 185 34.6
Rhsim05G0081400 Rhododendron simsii HOM05D006858 ORTHO05D008767 7.9e-13 80.1 155 34.8
Sabra09G0080800 Salix brachista HOM05D006858 ORTHO05D008767 7.9e-13 80.1 159 34.6
BcaB06g27362 Brassica carinata HOM05D006858 ORTHO05D008767 1.0e-12 79.7 53 67.9
Cfa005452 Carpinus fangiana HOM05D006858 ORTHO05D008767 1.0e-12 79.7 185 31.4
MELO3C018437.2 Cucumis melo HOM05D006858 ORTHO05D008767 1.0e-12 79.7 160 35.0
Migut.N01200 Erythranthe guttata HOM05D006858 ORTHO05D008767 1.0e-12 79.7 51 66.7
Carub.0007s3617 Capsella rubella HOM05D006858 ORTHO05D008767 1.3e-12 79.3 53 69.8
CsaV3_7G008750 Cucumis sativus L. HOM05D006858 ORTHO05D008767 1.8e-12 79.0 160 35.0
ClCG02G005770 Citrullus lanatus HOM05D006858 ORTHO05D008767 3.0e-12 78.2 160 33.8
Eucgr.I01171 Eucalyptus grandis HOM05D006858 ORTHO05D008767 3.0e-12 78.2 56 62.5
Glyma.20G010100 Glycine max HOM05D006858 ORTHO05D008767 3.0e-12 78.2 49 67.3
Nitab4.5_0004334g0100 Nicotiana tabacum HOM05D006858 ORTHO05D008767 6.7e-12 77.0 56 60.7
Nitab4.5_0005583g0010 Nicotiana tabacum HOM05D006858 ORTHO05D008767 6.7e-12 77.0 56 60.7
Os06g0152500 Oryza sativa ssp. japonica HOM05D006858 ORTHO05D008767 6.7e-12 77.0 53 62.3
Oeu013687.1 Olea europaea HOM05D006858 ORTHO05D008767 8.7e-12 76.6 190 33.2
EL10Ac9g21827 Beta vulgaris HOM05D006858 ORTHO05D008767 1.5e-11 75.9 166 32.5
Sopen01g050630 Solanum pennellii HOM05D006858 ORTHO05D008767 2.5e-11 75.1 53 60.4
PGSC0003DMG401025809 Solanum tuberosum HOM05D006858 ORTHO05D008767 2.5e-11 75.1 53 60.4
Lalb_Chr10g0095481 Lupinus albus HOM05D006858 ORTHO05D008767 3.3e-11 74.7 187 31.6
Potri.009G105600 Populus trichocarpa HOM05D006858 ORTHO05D008767 3.3e-11 74.7 159 34.6
HanXRQChr10g0303231 Helianthus annuus HOM05D006858 ORTHO05D008767 4.3e-11 74.3 159 33.3
Lj2g0007949 Lotus japonicus HOM05D006858 ORTHO05D008767 4.3e-11 74.3 160 34.4
Phvul.003G012700 Phaseolus vulgaris HOM05D006858 ORTHO05D008767 9.7e-11 73.2 167 34.1
SGA_v2.0_scaffold13G06572 Striga asiatica HOM05D006858 ORTHO05D008767 9.7e-11 73.2 57 57.9
Zm00001eb376700 Zea mays HOM05D006858 ORTHO05D008767 9.7e-11 73.2 53 56.6
PGSC0003DMG402025785 Solanum tuberosum HOM05D006858 ORTHO05D008767 1.3e-10 72.8 53 58.5
MSTRG.27720 Avicennia marina HOM05D006858 ORTHO05D008767 3.7e-10 71.2 164 31.7
Dinv23584 Davidia involucrata HOM05D006858 ORTHO05D008767 3.7e-10 71.2 53 60.4
Peaxi162Scf00016g00164 Petunia axillaris HOM05D006858 ORTHO05D008767 3.7e-10 71.2 160 30.6
AUR62016628 Chenopodium quinoa HOM05D006858 ORTHO05D008767 4.8e-10 70.9 166 33.7
VMungo1215G0504 Vigna mungo HOM05D006858 ORTHO05D008767 4.8e-10 70.9 162 32.1
Ciclev10028118m.g Citrus clementina HOM05D006858 ORTHO05D008767 6.3e-10 70.5 50 60.0
FAN27G2753 Fragaria x ananassa HOM05D006858 ORTHO05D008767 6.3e-10 70.5 53 56.6
ATR0043G014 Amborella trichopoda HOM05D006858 ORTHO05D007321 8.2e-10 70.1 82 78.0
Medtr1g033960 Medicago truncatula HOM05D006858 ORTHO05D008767 8.2e-10 70.1 143 33.6
Psat6g096520 Pisum sativum HOM05D006858 ORTHO05D008767 1.4e-09 69.3 53 60.4
Carub.0007s3622 Capsella rubella HOM05D006858 ORTHO05D008767 1.8e-09 68.9 135 34.8
CAN.G322.19 Capsicum annuum HOM05D006858 ORTHO05D008767 5.3e-09 67.4 185 31.4
Ca_12460_v3 Cicer arietinum L. HOM05D006858 ORTHO05D008767 5.3e-09 67.4 53 56.6
Ca_29767_v3 Cicer arietinum L. HOM05D006858 ORTHO05D008767 5.3e-09 67.4 53 56.6
SEGI_33508 Sequoiadendron giganteum HOM05D006858 ORTHO05D008767 1.2e-08 66.2 160 33.8
Solyc01g108410.3 Solanum lycopersicum HOM05D006858 ORTHO05D008767 2.0e-08 65.5 162 32.1
Lj9A359T74 Lonicera japonica HOM05D006858 ORTHO05D008767 3.4e-08 64.7 164 31.7
ClCG02G009270 Citrullus lanatus HOM05D006931 ORTHO05D008782 2.9e-07 61.6 159 32.7
Hma1.2p1_0524F.1_g172380 Hydrangea macrophylla HOM05D007291 ORTHO05D009038 5.0e-07 60.8 124 34.7
TAR633G1647 Trochodendron aralioides HOM05D006858 ORTHO05D008767 5.0e-07 60.8 38 68.4
Hma1.2p1_1840F.1_g304950 Hydrangea macrophylla HOM05D007291 ORTHO05D009038 8.5e-07 60.1 124 33.9
TAR633G1560 Trochodendron aralioides HOM05D006858 ORTHO05D008767 1.1e-06 59.7 67 44.8
Zm00001eb348200 Zea mays HOM05D006858 ORTHO05D008767 1.1e-06 59.7 42 57.1
HPP92_006001 Vanilla planifolia HOM05D006858 ORTHO05D008767 1.4e-06 59.3 137 34.3
Prupe.8G118500 Prunus persica HOM05D006858 ORTHO05D008767 2.5e-06 58.5 184 30.4
SEGI_04297 Sequoiadendron giganteum HOM05D007212 ORTHO05D009094 2.5e-06 58.5 183 31.7
CsaV3_6G009550 Cucumis sativus L. HOM05D006931 ORTHO05D008782 4.2e-06 57.8 158 32.3


User provided reference genes

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