Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1120G055 Amborella trichopoda HOM05D004019 ORTHO05D005136 0.0e+00 4991.0 2540 100.0
TAR624G1332 Trochodendron aralioides HOM05D004019 ORTHO05D005136 0.0e+00 3466.8 2582 70.1
Nn8g39221 Nelumbo nucifera HOM05D004019 ORTHO05D005136 0.0e+00 3399.8 2544 69.5
Dinv14207 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 3310.4 2542 68.1
Dinv30236 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 3271.9 2546 68.0
Aqoxy7G01749 Aquilegia oxysepala HOM05D004019 ORTHO05D005136 0.0e+00 3258.0 2546 66.7
Prupe.1G464500 Prunus persica HOM05D004019 ORTHO05D005136 0.0e+00 3239.5 2556 66.2
PSO063G5962 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 3213.7 2547 66.0
PSO782G0289 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 3210.2 2553 66.3
GSVIVG01035749001 Vitis vinifera HOM05D004019 ORTHO05D005136 0.0e+00 3208.7 2545 65.9
CSS0034867 Camellia sinensis var. sinensis HOM05D004019 ORTHO05D005136 0.0e+00 3207.2 2552 66.8
TWI63G0705 Tripterygium wilfordii HOM05D004019 ORTHO05D005136 0.0e+00 3199.5 2560 65.5
MBI03_g19627_MAGBIO Magnolia biondii HOM05D004019 ORTHO05D005136 0.0e+00 3196.0 2425 69.2
Thecc.09G037700 Theobroma cacao HOM05D004019 ORTHO05D005136 0.0e+00 3193.3 2543 66.1
RcHm_v2.0_Chr6g0312581 Rosa chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3191.0 2551 65.5
COL.COLO4_18737 Corchorus olitorius HOM05D004019 ORTHO05D005136 0.0e+00 3183.3 2551 65.7
CiPaw.07G216600 Carya illinoinensis HOM05D004019 ORTHO05D005136 0.0e+00 3174.4 2551 65.2
Ciclev10007225m.g Citrus clementina HOM05D004019 ORTHO05D005136 0.0e+00 3167.9 2547 65.0
FvH4_2g30330 Fragaria vesca HOM05D004019 ORTHO05D005136 0.0e+00 3165.9 2547 65.1
Gorai.009G053000 Gossypium raimondii HOM05D004019 ORTHO05D005136 0.0e+00 3149.8 2552 64.7
FAN24G2881 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 3149.4 2574 64.3
Actinidia13300 Actinidia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3146.7 2546 65.4
MD15G1113500 Malus domestica HOM05D004019 ORTHO05D005136 0.0e+00 3146.7 2583 64.2
Atru.chr7.2305 Acer truncatum HOM05D004019 ORTHO05D005136 0.0e+00 3142.1 2554 64.6
Potri.006G244900 Populus trichocarpa HOM05D004019 ORTHO05D005136 0.0e+00 3128.6 2569 64.2
CANSAT25G1365 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 3118.6 2556 63.8
CANSAT56G4370 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 3108.9 2549 63.9
Lj1g0020850 Lotus japonicus HOM05D004019 ORTHO05D005136 0.0e+00 3092.4 2546 64.1
Lalb_Chr11g0064021 Lupinus albus HOM05D004019 ORTHO05D005136 0.0e+00 3087.4 2541 63.8
arahy.Tifrunner.gnm1.ann1.WYF2AC Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 3060.8 2556 63.5
Ca_15687_v3 Cicer arietinum L. HOM05D004019 ORTHO05D005136 0.0e+00 3060.8 2549 63.6
Glyma.06G074700 Glycine max HOM05D004019 ORTHO05D005136 0.0e+00 3058.9 2550 63.5
Sabra06G0191800 Salix brachista HOM05D004019 ORTHO05D005136 0.0e+00 3053.8 2622 62.2
Psat5g025600 Pisum sativum HOM05D004019 ORTHO05D005136 0.0e+00 3032.3 2541 62.8
TPR.G12417 Trifolium pratense HOM05D004019 ORTHO05D005136 0.0e+00 3017.3 2545 62.4
Eucgr.C01572 Eucalyptus grandis HOM05D004019 ORTHO05D005136 0.0e+00 3015.7 2552 62.7
Medtr3g108360 Medicago truncatula HOM05D004019 ORTHO05D005136 0.0e+00 3009.6 2543 62.3
Rhsim02G0185100 Rhododendron simsii HOM05D004019 ORTHO05D005136 0.0e+00 3000.3 2869 58.2
arahy.Tifrunner.gnm1.ann1.P4KF2E Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 2985.3 2559 62.7
Migut.A00257 Erythranthe guttata HOM05D004019 ORTHO05D005136 0.0e+00 2978.0 2548 62.2
PGR031G1071 Punica granatum HOM05D004019 ORTHO05D005136 0.0e+00 2951.8 2548 61.9
Phvul.009G099400 Phaseolus vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 2946.4 2235 68.4
MSTRG.25887 Avicennia marina HOM05D004019 ORTHO05D005136 0.0e+00 2935.2 2548 60.8
HanXRQChr17g0539391 Helianthus annuus HOM05D004019 ORTHO05D005136 0.0e+00 2934.1 2545 61.2
THA.LOC104803772 Tarenaya hassleriana HOM05D004019 ORTHO05D005136 0.0e+00 2932.1 2543 61.6
Cc08_g08140 Coffea canephora HOM05D004019 ORTHO05D005136 0.0e+00 2922.1 2345 65.2
Sopen08g021930 Solanum pennellii HOM05D004019 ORTHO05D005136 0.0e+00 2920.2 2535 61.3
Sed0026885 Sechium edule HOM05D004019 ORTHO05D005136 0.0e+00 2908.6 2549 60.5
CsaV3_3G046830 Cucumis sativus L. HOM05D004019 ORTHO05D005136 0.0e+00 2901.3 2554 60.8
Lsat_1_v5_gn_3_27801 Lactuca sativa HOM05D004019 ORTHO05D005136 0.0e+00 2894.8 2607 60.7
Sc09g0008920 Simmondsia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 2891.7 2547 59.8
ECA246G1280 Erigeron canadensis HOM05D004019 ORTHO05D005136 0.0e+00 2865.9 2575 60.3
AT2G25730 Arabidopsis thaliana HOM05D004019 ORTHO05D005136 0.0e+00 2823.5 2542 59.4
Carub.0004s0550 Capsella rubella HOM05D004019 ORTHO05D005136 0.0e+00 2819.6 2538 59.1
Sp4g05330 Schrenkiella parvula HOM05D004019 ORTHO05D005136 0.0e+00 2811.9 2539 59.2
AL4G17350 Arabidopsis lyrata HOM05D004019 ORTHO05D005136 0.0e+00 2811.2 2535 59.2
EL10Ac2g02527 Beta vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 2808.5 2559 59.3
Manes.03G064200 Manihot esculenta HOM05D004019 ORTHO05D005136 0.0e+00 2776.5 2095 68.6
AUR62024824 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 2776.1 2558 58.2
CARHR115530 Cardamine hirsuta HOM05D004019 ORTHO05D005136 0.0e+00 2775.3 2535 59.1
C03p32450 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 2764.6 2532 58.3
A03p27040 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 2755.7 2531 58.3
AUR62032391 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 2752.6 2556 58.1
BolC3t15586H Brassica oleracea HOM05D004019 ORTHO05D005136 0.0e+00 2742.2 2564 57.6
BraA03t11915Z Brassica rapa HOM05D004019 ORTHO05D005136 0.0e+00 2739.9 2563 57.5
Thhalv10000005m.g Eutrema salsugineum HOM05D004019 ORTHO05D005136 0.0e+00 2671.3 2219 63.5
SGA_v2.0_scaffold280G46835 Striga asiatica HOM05D004019 ORTHO05D005136 0.0e+00 2667.9 2644 56.4
Aa31LG5G9950 Aethionema arabicum HOM05D004019 ORTHO05D005136 0.0e+00 2664.0 2555 57.1
Lj8C607G10 Lonicera japonica HOM05D004019 ORTHO05D005136 0.0e+00 2635.9 1863 72.7
QL12p030977 Quercus lobata HOM05D004019 ORTHO05D005136 0.0e+00 2624.7 1900 71.2
MELO3C003655.2 Cucumis melo HOM05D004019 ORTHO05D005136 0.0e+00 2486.1 2031 64.5
VMungo1309G1295 Vigna mungo HOM05D004019 ORTHO05D005136 0.0e+00 2419.8 1725 72.2
Zm00001eb161040 Zea mays HOM05D004019 ORTHO05D005136 0.0e+00 2405.6 2330 57.0
Gohir.D05G051300 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 2315.4 1631 72.7
Pp3c19_2530 Physcomitrium patens HOM05D004019 ORTHO05D005136 0.0e+00 2198.7 2689 48.1
Mapoly0049s0060 Marchantia polymorpha HOM05D004019 ORTHO05D005136 0.0e+00 2137.5 2758 46.7
DCAR_006256 Daucus carota HOM05D004019 ORTHO05D005136 0.0e+00 2052.3 1783 62.0
FAN20G0521 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 2031.1 1856 58.6
Oeu063261.5 Olea europaea HOM05D004019 ORTHO05D005136 0.0e+00 2010.3 1718 62.8
unitig_747.g21875 Utricularia gibba HOM05D004019 ORTHO05D005136 0.0e+00 1933.7 1691 60.7
Gohir.A05G049400 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 1914.8 1755 58.6
SMO172G0089 Selaginella moellendorffii HOM05D004019 ORTHO05D005136 0.0e+00 1758.4 2559 42.5
Solyc08g068010.2 Solanum lycopersicum HOM05D004019 ORTHO05D005136 0.0e+00 1565.4 1126 71.8
Ah.12g060340 Amaranthus hybridus HOM05D004019 ORTHO05D005136 0.0e+00 1563.5 1423 60.5
Hma1.2p1_0140F.1_g063760 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1558.9 1192 67.7
Hma1.2p1_0140F.1_g063770 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1550.0 1180 68.7
Cpa.g.sc205.26 Carica papaya HOM05D004019 ORTHO05D005136 0.0e+00 1534.2 1077 73.4
CBR_g31401 Chara braunii HOM05D004019 ORTHO05D005136 0.0e+00 1514.6 2343 41.1
SEGI_05898 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 0.0e+00 1513.4 1190 66.9
vmacro08818 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 0.0e+00 1513.4 1165 68.5
AagrBONN_evm.TU.Sc2ySwM_340.130 Anthoceros agrestis HOM05D004019 ORTHO05D005136 0.0e+00 1486.1 2666 37.4
Peaxi162Scf00105g00818 Petunia axillaris HOM05D004019 ORTHO05D005136 0.0e+00 1481.8 1147 68.4
CDE10G0881 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1452.6 1634 50.6
HPP92_006443 Vanilla planifolia HOM05D004019 ORTHO05D005136 0.0e+00 1364.0 1171 62.6
FAN20G1524 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 1275.4 843 75.7
Nitab4.5_0000250g0110 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 1248.8 1511 47.8
CDE10G0547 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1203.3 883 69.2
Gohir.A05G049350 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 1149.0 734 78.6
Nitab4.5_0002393g0030 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 1105.5 1499 44.5
HPP92_006442 Vanilla planifolia HOM05D004019 ORTHO05D005136 3.5e-294 1016.5 1132 50.0
vmacro11105 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 5.2e-290 1002.7 675 75.1
Haze_21654 Corylus avellana HOM05D004019 ORTHO05D005136 4.3e-268 929.9 613 77.3
SHI11646 Sapria himalayana HOM05D004019 ORTHO05D000023 2.1e-235 821.2 1035 46.6
vmacro11102 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 1.2e-225 788.9 1046 45.9
Haze_21655 Corylus avellana HOM05D004019 ORTHO05D005136 1.4e-213 748.8 637 63.6
Haze_21656 Corylus avellana HOM05D004019 ORTHO05D005136 1.1e-202 712.6 920 45.0
Ah.12g060350 Amaranthus hybridus HOM05D004019 ORTHO05D005136 3.3e-196 691.0 923 45.2
Nitab4.5_0000250g0120 Nicotiana tabacum HOM05D004019 ORTHO05D005136 4.2e-183 647.5 847 48.2
QL12p030952 Quercus lobata HOM05D004019 ORTHO05D005136 3.4e-164 584.7 746 46.0
Hund02996 Selenicereus undatus HOM05D004019 ORTHO05D005136 6.4e-163 580.5 613 56.0
Nitab4.5_0002393g0010 Nicotiana tabacum HOM05D004019 ORTHO05D005136 6.0e-161 573.9 371 76.5
Cpa.g.sc205.24 Carica papaya HOM05D004019 ORTHO05D005136 9.8e-156 556.6 503 59.4
Solyc08g068040.3 Solanum lycopersicum HOM05D004019 ORTHO05D005136 4.9e-155 554.3 678 45.3
SHI11647 Sapria himalayana HOM05D004019 ORTHO05D005136 1.5e-151 542.7 867 39.1
Peaxi162Scf00105g00812 Petunia axillaris HOM05D004019 ORTHO05D005136 2.3e-149 535.4 679 43.6
Peaxi162Scf00105g00817 Petunia axillaris HOM05D004019 ORTHO05D005136 1.6e-142 512.7 496 56.2
Cpa.g.sc205.19 Carica papaya HOM05D004019 ORTHO05D005136 8.9e-141 506.9 493 55.6
DCAR_006255 Daucus carota HOM05D004019 ORTHO05D005136 4.4e-140 504.6 501 56.3
SEGI_01785 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 2.3e-136 492.3 517 50.9
ClCG05G017320 Citrullus lanatus HOM05D004019 ORTHO05D005136 3.9e-136 491.5 685 43.1
vmacro11103 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 3.4e-124 451.8 551 49.7
SalBow4G2655 Salvia bowleyana HOM05D004019 ORTHO05D005136 2.1e-105 389.4 493 44.6
Os01g0593000 Oryza sativa ssp. japonica HOM05D004019 ORTHO05D005136 1.4e-98 366.7 250 72.0
vmacro11104 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 7.2e-98 364.4 239 78.7
unitig_747.g21874 Utricularia gibba HOM05D004019 ORTHO05D005136 3.7e-86 325.5 344 50.6
Hma1.2p1_0140F.1_g063780 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 6.3e-86 324.7 204 81.9
Haze_21653 Corylus avellana HOM05D004019 ORTHO05D005136 6.3e-78 298.1 223 69.5
Nitab4.5_0000250g0090 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.6e-76 293.5 166 84.9
Cfa013229 Carpinus fangiana HOM05D004019 ORTHO05D005136 2.7e-76 292.7 209 72.2
SEGI_29718 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 2.7e-76 292.7 158 88.0
vmacro11106 Vaccinium macrocarpon HOM05D005362 ORTHO05D006895 8.0e-73 281.2 229 63.8
Ah.12g060330 Amaranthus hybridus HOM05D004019 ORTHO05D005136 1.1e-69 270.8 166 77.1
SHI11644 Sapria himalayana HOM05D004019 ORTHO05D000014 4.4e-63 248.8 253 54.5
DCAR_006257 Daucus carota HOM05D004019 ORTHO05D005136 5.0e-59 235.3 137 85.4
Nitab4.5_0000250g0100 Nicotiana tabacum HOM05D004019 ORTHO05D005136 2.9e-54 219.5 338 41.4
PRCOL_00001920 Prasinoderma coloniale HOM05D004019 ORTHO05D005136 5.6e-50 205.3 1281 24.8
Cpa.g.sc205.16 Carica papaya HOM05D004019 ORTHO05D005136 4.1e-45 189.1 335 38.8
SHI11640 Sapria himalayana HOM05D004019 ORTHO05D000023 5.4e-45 188.7 257 41.6
HanXRQChr03g0075941 Helianthus annuus HOM05D004019 ORTHO05D005136 9.2e-37 161.4 107 74.8
Hma1.2p1_0140F.1_g063800 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 2.3e-35 156.8 116 69.0
Cc00_g31360 Coffea canephora HOM05D004019 ORTHO05D005136 9.5e-34 151.4 322 32.9
AUR62038490 Chenopodium quinoa HOM05D004019 ORTHO05D005136 4.7e-33 149.1 116 71.6
DCAR_006254 Daucus carota HOM05D004019 ORTHO05D005136 1.4e-32 147.5 313 32.6
Solyc08g068030.1 Solanum lycopersicum HOM05D004019 ORTHO05D005136 2.6e-31 143.3 144 54.9
Cc08_g08730 Coffea canephora HOM05D000021 ORTHO05D000010 1.7e-30 140.6 323 31.9
MD00G1060000 Malus domestica HOM05D004019 ORTHO05D005136 3.3e-26 126.3 101 71.3
MD08G1211900 Malus domestica HOM05D004019 ORTHO05D005136 3.3e-26 126.3 101 71.3
unitig_747.g21873 Utricularia gibba HOM05D004019 ORTHO05D005136 4.3e-26 125.9 318 31.1
Prupe.5G099400 Prunus persica HOM05D004019 ORTHO05D005136 1.5e-23 117.5 81 71.6
PGR042G0250 Punica granatum HOM05D004019 ORTHO05D005136 4.4e-23 115.9 144 43.8
Lsat_1_v5_gn_4_165520 Lactuca sativa HOM05D004019 ORTHO05D005136 2.5e-18 100.1 140 49.3
Actinidia14324 Actinidia chinensis HOM05D004019 ORTHO05D005136 3.3e-18 99.8 131 54.2
Oeu022768.1 Olea europaea HOM05D004019 ORTHO05D005136 5.6e-18 99.0 120 45.0
Prupe.5G112400 Prunus persica HOM05D004019 ORTHO05D005136 7.6e-15 88.6 117 47.9
FvH4_2g30290 Fragaria vesca HOM05D004019 ORTHO05D035247 4.2e-13 82.8 69 65.2
FAN24G2522 Fragaria x ananassa HOM05D004019 ORTHO05D035247 4.2e-13 82.8 69 65.2
Haze_21651 Corylus avellana HOM05D004019 ORTHO05D005136 1.2e-12 81.3 68 63.2
SHI11643 Sapria himalayana HOM05D004019 ORTHO05D035247 2.7e-12 80.1 80 53.8
Hund02997 Selenicereus undatus HOM05D004019 ORTHO05D005136 4.6e-12 79.3 51 76.5
Glyma.04G073626 Glycine max HOM05D004019 ORTHO05D005136 1.0e-11 78.2 51 76.5
Hund02993 Selenicereus undatus HOM05D004019 ORTHO05D000004 1.0e-11 78.2 80 51.2
TPR.G12424 Trifolium pratense HOM05D004019 ORTHO05D005136 1.0e-11 78.2 88 45.5
Actinidia36698 Actinidia chinensis HOM05D004019 ORTHO05D005136 1.3e-11 77.8 120 50.0
Actinidia31247 Actinidia chinensis HOM05D004019 ORTHO05D005136 3.9e-11 76.3 73 60.3
Medtr3g108370 Medicago truncatula HOM05D004019 ORTHO05D005136 5.1e-11 75.9 151 33.1
Medtr3g109982 Medicago truncatula HOM05D000051 ORTHO05D000015 5.6e-10 72.4 184 31.5
Medtr3g107940 Medicago truncatula HOM05D004019 ORTHO05D000015 1.3e-09 71.2 93 41.9
Cpa.g.sc205.23 Carica papaya HOM05D004019 ORTHO05D005136 4.8e-09 69.3 70 58.6
Actinidia23592 Actinidia chinensis HOM05D004019 ORTHO05D005136 1.4e-08 67.8 79 58.2
Nitab4.5_0005144g0040 Nicotiana tabacum HOM05D004019 ORTHO05D005136 2.0e-07 63.9 35 80.0
Cc08_g08790 Coffea canephora HOM05D004019 ORTHO05D005136 2.6e-07 63.5 58 53.4
Cc00_g28950 Coffea canephora HOM05D004019 ORTHO05D005136 6.4e-06 58.9 58 51.7


User provided reference genes

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