Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1120G033 Amborella trichopoda HOM05D005271 ORTHO05D006072 5.7e-53 210.7 110 100.0
Cfa001130 Carpinus fangiana HOM05D005271 ORTHO05D006072 1.4e-27 126.3 104 61.5
Potri.001G160500 Populus trichocarpa HOM05D005271 ORTHO05D006072 9.2e-27 123.6 107 56.1
Manes.01G042100 Manihot esculenta HOM05D005271 ORTHO05D006072 1.6e-26 122.9 107 58.9
ClCG01G025510 Citrullus lanatus HOM05D005271 ORTHO05D006072 2.1e-26 122.5 106 57.5
Sed0007631 Sechium edule HOM05D005271 ORTHO05D006072 2.1e-26 122.5 106 58.5
Thecc.04G266100 Theobroma cacao HOM05D005271 ORTHO05D006072 4.6e-26 121.3 104 56.7
FAN16G1303 Fragaria x ananassa HOM05D005271 ORTHO05D006072 6.0e-26 120.9 107 56.1
FvH4_4g01060 Fragaria vesca HOM05D005271 ORTHO05D006072 7.8e-26 120.6 107 56.1
FAN12G2425 Fragaria x ananassa HOM05D005271 ORTHO05D006072 7.8e-26 120.6 107 56.1
TAR629G0996 Trochodendron aralioides HOM05D005271 ORTHO05D006072 7.8e-26 120.6 108 61.1
TAR627G0156 Trochodendron aralioides HOM05D005271 ORTHO05D006072 1.0e-25 120.2 98 61.2
CiPaw.09G137400 Carya illinoinensis HOM05D005271 ORTHO05D006072 1.3e-25 119.8 109 56.0
CDE05G0701 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 1.3e-25 119.8 85 64.7
TWI15G1056 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 1.3e-25 119.8 107 58.9
Duzib212G0597 Durio zibethinus HOM05D005271 ORTHO05D006072 1.7e-25 119.4 104 58.7
Nn7g38328 Nelumbo nucifera HOM05D005271 ORTHO05D006072 1.7e-25 119.4 108 58.3
FAN21G0135 Fragaria x ananassa HOM05D005271 ORTHO05D006072 2.3e-25 119.0 109 56.0
FvH4_3g12930 Fragaria vesca HOM05D005271 ORTHO05D006072 6.6e-25 117.5 107 54.2
FAN11G1405 Fragaria x ananassa HOM05D005271 ORTHO05D006072 6.6e-25 117.5 107 54.2
Cpa.g.sc51.137 Carica papaya HOM05D005271 ORTHO05D006072 8.6e-25 117.1 107 58.9
Duzib151G0973 Durio zibethinus HOM05D005271 ORTHO05D006072 8.6e-25 117.1 104 58.7
FAN22G0530 Fragaria x ananassa HOM05D005271 ORTHO05D006072 8.6e-25 117.1 107 56.1
Sabra01G0131700 Salix brachista HOM05D005271 ORTHO05D006072 8.6e-25 117.1 120 53.3
Rhsim04G0167900 Rhododendron simsii HOM05D005271 ORTHO05D006072 1.1e-24 116.7 109 57.8
CsaV3_6G052780 Cucumis sativus L. HOM05D005271 ORTHO05D006072 1.9e-24 115.9 106 55.7
Oeu017888.1 Olea europaea HOM05D005271 ORTHO05D006072 1.9e-24 115.9 107 57.0
PSO782G3340 Papaver somniferum HOM05D005271 ORTHO05D006072 1.9e-24 115.9 90 62.2
RcHm_v2.0_Chr5g0021041 Rosa chinensis HOM05D005271 ORTHO05D006072 1.9e-24 115.9 107 53.3
vmacro03554 Vaccinium macrocarpon HOM05D005271 ORTHO05D006072 1.9e-24 115.9 109 56.9
Glyma.19G010500 Glycine max HOM05D005271 ORTHO05D006072 2.5e-24 115.5 106 55.7
Gohir.A09G226900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 2.5e-24 115.5 104 55.8
VMungo0464G2009 Vigna mungo HOM05D005271 ORTHO05D006072 2.5e-24 115.5 104 57.7
Atru.chr1.851 Acer truncatum HOM05D005271 ORTHO05D006072 3.3e-24 115.2 107 54.2
TWI63G0865 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 3.3e-24 115.2 107 57.0
Zm00001eb071020 Zea mays HOM05D005271 ORTHO05D006072 3.3e-24 115.2 90 63.3
CDE05G1696 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 4.3e-24 114.8 106 55.7
Gohir.D09G227900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 4.3e-24 114.8 104 55.8
Gorai.006G250600 Gossypium raimondii HOM05D005271 ORTHO05D006072 4.3e-24 114.8 104 55.8
PSO541G1812 Papaver somniferum HOM05D005271 ORTHO05D006072 4.3e-24 114.8 109 56.9
PGR142G2670 Punica granatum HOM05D005271 ORTHO05D006072 5.6e-24 114.4 107 54.2
Glyma.13G170400 Glycine max HOM05D005271 ORTHO05D006072 7.3e-24 114.0 106 54.7
PSO675G0749 Papaver somniferum HOM05D005271 ORTHO05D006072 7.3e-24 114.0 109 56.0
QL11p012305 Quercus lobata HOM05D005271 ORTHO05D006072 7.3e-24 114.0 91 61.5
Phvul.004G017800 Phaseolus vulgaris HOM05D005271 ORTHO05D006072 9.5e-24 113.6 104 55.8
Manes.05G190800 Manihot esculenta HOM05D005271 ORTHO05D006072 1.2e-23 113.2 106 56.6
Psat0s5346g0120 Pisum sativum HOM05D005271 ORTHO05D006072 1.2e-23 113.2 104 51.9
Ciclev10017270m.g Citrus clementina HOM05D005271 ORTHO05D006072 1.6e-23 112.8 107 53.3
Cc10_g11580 Coffea canephora HOM05D005271 ORTHO05D006072 1.6e-23 112.8 91 62.6
Gohir.A10G107101 Gossypium hirsutum HOM05D005271 ORTHO05D006072 1.6e-23 112.8 87 59.8
Lj2g0008924 Lotus japonicus HOM05D005271 ORTHO05D006072 1.6e-23 112.8 104 54.8
Medtr6g017185 Medicago truncatula HOM05D005271 ORTHO05D006072 1.6e-23 112.8 106 51.9
arahy.Tifrunner.gnm1.ann1.0KQV7A Arachis hypogaea HOM05D005271 ORTHO05D006072 2.1e-23 112.5 106 51.9
arahy.Tifrunner.gnm1.ann1.31Z3CL Arachis hypogaea HOM05D005271 ORTHO05D006072 2.1e-23 112.5 106 51.9
Ah.05g173390 Amaranthus hybridus HOM05D005271 ORTHO05D006072 2.8e-23 112.1 100 53.0
CSS0040197 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 2.8e-23 112.1 108 56.5
CAN.G350.33 Capsicum annuum HOM05D005271 ORTHO05D006072 8.1e-23 110.5 102 52.9
Dinv31186 Davidia involucrata HOM05D005271 ORTHO05D006072 8.1e-23 110.5 98 56.1
HPP92_012976 Vanilla planifolia HOM05D005271 ORTHO05D006072 1.1e-22 110.2 108 53.7
PSO170G3626 Papaver somniferum HOM05D005271 ORTHO05D006072 1.4e-22 109.8 85 62.4
arahy.Tifrunner.gnm1.ann1.VX2J7C Arachis hypogaea HOM05D005271 ORTHO05D006072 1.8e-22 109.4 106 50.9
CANSAT25G1004 Cannabis sativa HOM05D005271 ORTHO05D006072 1.8e-22 109.4 97 57.7
Sc10g0007720 Simmondsia chinensis HOM05D005271 ORTHO05D006072 1.8e-22 109.4 88 61.4
MELO3C007032.2 Cucumis melo HOM05D005271 ORTHO05D006072 2.4e-22 109.0 106 52.8
Prupe.4G117300 Prunus persica HOM05D005271 ORTHO05D006072 2.4e-22 109.0 107 52.3
arahy.Tifrunner.gnm1.ann1.5IT82G Arachis hypogaea HOM05D005271 ORTHO05D006072 3.1e-22 108.6 106 50.9
GSVIVG01012142001 Vitis vinifera HOM05D005271 ORTHO05D006072 3.1e-22 108.6 88 60.2
Actinidia22429 Actinidia chinensis HOM05D005271 ORTHO05D006072 4.0e-22 108.2 106 51.9
Nitab4.5_0002741g0010 Nicotiana tabacum HOM05D005271 ORTHO05D006072 5.2e-22 107.8 102 52.9
CARHR125350 Cardamine hirsuta HOM05D005271 ORTHO05D006072 6.8e-22 107.5 107 52.3
Ca_28197_v3 Cicer arietinum L. HOM05D005271 ORTHO05D006072 6.8e-22 107.5 104 51.9
Migut.N03355 Erythranthe guttata HOM05D005271 ORTHO05D006072 6.8e-22 107.5 107 51.4
Nitab4.5_0004741g0030 Nicotiana tabacum HOM05D005271 ORTHO05D006072 6.8e-22 107.5 102 52.9
Lsat_1_v5_gn_2_4960 Lactuca sativa HOM05D005271 ORTHO05D006072 1.2e-21 106.7 94 55.3
MD05G1247100 Malus domestica HOM05D005271 ORTHO05D006072 1.2e-21 106.7 93 57.0
Aqoxy1G00251 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 1.5e-21 106.3 91 61.5
Os04g0612900 Oryza sativa ssp. japonica HOM05D005271 ORTHO05D006072 1.5e-21 106.3 90 58.9
AL1G15680 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 2.0e-21 105.9 105 53.3
HanXRQChr14g0428301 Helianthus annuus HOM05D005271 ORTHO05D006072 3.4e-21 105.1 106 49.1
Hma1.2p1_0088F.1_g045170 Hydrangea macrophylla HOM05D005271 ORTHO05D006072 3.4e-21 105.1 108 50.9
Aa31LG5G5280 Aethionema arabicum HOM05D005271 ORTHO05D006072 4.4e-21 104.8 107 52.3
EL10Ac1g00803 Beta vulgaris HOM05D005271 ORTHO05D006072 4.4e-21 104.8 105 51.4
Rhsim12G0144200 Rhododendron simsii HOM05D005271 ORTHO05D006072 4.4e-21 104.8 130 49.2
ECA238G4336 Erigeron canadensis HOM05D005271 ORTHO05D006072 5.8e-21 104.4 106 48.1
MD10G1227700 Malus domestica HOM05D005271 ORTHO05D006072 5.8e-21 104.4 95 54.7
DCAR_002456 Daucus carota HOM05D005271 ORTHO05D006072 7.6e-21 104.0 90 57.8
DCAR_002458 Daucus carota HOM05D005271 ORTHO05D006072 7.6e-21 104.0 90 57.8
SGA_v2.0_scaffold149G36579 Striga asiatica HOM05D005271 ORTHO05D006072 7.6e-21 104.0 107 48.6
AT2G31710 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 9.9e-21 103.6 107 52.3
arahy.Tifrunner.gnm1.ann1.FU3306 Arachis hypogaea HOM05D005271 ORTHO05D006072 9.9e-21 103.6 106 50.0
AT1G05780 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 1.3e-20 103.2 105 51.4
BcaB01g04025 Brassica carinata HOM05D005271 ORTHO05D006072 1.3e-20 103.2 100 53.0
Carub.0004s1300 Capsella rubella HOM05D005271 ORTHO05D006072 1.7e-20 102.8 107 51.4
Thhalv10017819m.g Eutrema salsugineum HOM05D005271 ORTHO05D006072 2.2e-20 102.4 107 52.3
AUR62023913 Chenopodium quinoa HOM05D005271 ORTHO05D006072 2.9e-20 102.1 89 56.2
Lalb_Chr02g0160001 Lupinus albus HOM05D005271 ORTHO05D006072 2.9e-20 102.1 104 51.9
Lalb_Chr02g0160211 Lupinus albus HOM05D005271 ORTHO05D006072 2.9e-20 102.1 104 51.9
AL4G26950 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 3.8e-20 101.7 107 51.4
Cc03_g07280 Coffea canephora HOM05D005271 ORTHO05D006072 4.9e-20 101.3 94 56.4
THA.LOC104815870 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 4.9e-20 101.3 105 50.5
BraA03t11049Z Brassica rapa HOM05D000364 ORTHO05D006072 6.4e-20 100.9 109 49.5
Ah.01g016950 Amaranthus hybridus HOM05D005271 ORTHO05D006072 8.4e-20 100.5 90 56.7
MSTRG.22460 Avicennia marina HOM05D005271 ORTHO05D006072 8.4e-20 100.5 104 50.0
A03p17850 Brassica napus HOM05D000364 ORTHO05D006072 1.1e-19 100.1 109 49.5
Migut.C01265 Erythranthe guttata HOM05D005271 ORTHO05D006072 1.4e-19 99.8 91 56.0
Oeu021212.1 Olea europaea HOM05D005271 ORTHO05D006072 1.4e-19 99.8 107 54.2
CARHR005290 Cardamine hirsuta HOM05D005271 ORTHO05D006072 2.4e-19 99.0 102 52.0
THA.LOC104800917 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 2.4e-19 99.0 107 47.7
BcaB06g28531 Brassica carinata HOM05D005271 ORTHO05D006072 3.2e-19 98.6 104 51.9
C04p60870 Brassica napus HOM05D005271 ORTHO05D006072 3.2e-19 98.6 104 51.9
BolC4t27578H Brassica oleracea HOM05D005271 ORTHO05D006072 3.2e-19 98.6 104 51.9
BcaC01g05934 Brassica carinata HOM05D000364 ORTHO05D006072 4.1e-19 98.2 109 48.6
C03p20920 Brassica napus HOM05D000364 ORTHO05D006072 4.1e-19 98.2 109 48.6
HanXRQChr06g0184021 Helianthus annuus HOM05D005271 ORTHO05D006072 4.1e-19 98.2 100 52.0
SalBow1G3231 Salvia bowleyana HOM05D005271 ORTHO05D006072 4.1e-19 98.2 89 51.7
AUR62038333 Chenopodium quinoa HOM05D005271 ORTHO05D006072 5.4e-19 97.8 89 53.9
Peaxi162Scf00004g02726 Petunia axillaris HOM05D005271 ORTHO05D006072 5.4e-19 97.8 120 44.2
SalBow6G1192 Salvia bowleyana HOM05D005271 ORTHO05D006072 9.2e-19 97.1 89 50.6
A04p24140 Brassica napus HOM05D005271 ORTHO05D006072 1.2e-18 96.7 104 50.0
unitig_0.g914 Utricularia gibba HOM05D000362 ORTHO05D000325 1.2e-18 96.7 110 45.5
BraA04t17934Z Brassica rapa HOM05D005271 ORTHO05D006072 1.6e-18 96.3 104 51.0
Sopen11g025310 Solanum pennellii HOM05D005271 ORTHO05D006072 1.6e-18 96.3 88 52.3
C04p18180 Brassica napus HOM05D005271 ORTHO05D006072 1.0e-17 93.6 102 51.0
BolC4t23374H Brassica oleracea HOM05D005271 ORTHO05D006072 1.0e-17 93.6 102 51.0
SalBow7G2991 Salvia bowleyana HOM05D005271 ORTHO05D006072 1.0e-17 93.6 91 54.9
SGA_v2.0_scaffold118G32500 Striga asiatica HOM05D005271 ORTHO05D006072 3.0e-17 92.0 107 46.7
BcaB02g10411 Brassica carinata HOM05D000896 ORTHO05D006072 5.1e-17 91.3 107 47.7
A05p13810 Brassica napus HOM05D005271 ORTHO05D006072 8.7e-17 90.5 102 50.0
BcaC02g11279 Brassica carinata HOM05D005271 ORTHO05D006072 1.9e-16 89.4 102 49.0
MBI02_g01139_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 7.3e-16 87.4 76 63.2
SMO300G0007 Selaginella moellendorffii HOM05D005271 ORTHO05D006072 2.8e-15 85.5 83 50.6
Pp3c12_11530 Physcomitrium patens HOM05D005271 ORTHO05D006072 4.7e-15 84.7 102 44.1
MBI14_g01725_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 1.1e-14 83.6 69 62.3
Mapoly0098s0021 Marchantia polymorpha HOM05D005271 ORTHO05D006072 1.4e-14 83.2 91 45.1
COL.COLO4_15978 Corchorus olitorius HOM05D005271 ORTHO05D006072 4.0e-14 81.6 78 51.3
Zm00001eb430740 Zea mays HOM05D005271 ORTHO05D006072 1.2e-13 80.1 61 65.6
Haze_05264 Corylus avellana HOM05D005271 ORTHO05D006072 2.0e-13 79.3 75 53.3
Hund17073 Selenicereus undatus HOM05D005271 ORTHO05D006072 2.0e-13 79.3 61 65.6
Hund00748 Selenicereus undatus HOM05D005271 ORTHO05D006072 1.3e-12 76.6 64 56.2
EL10Ac9g21107 Beta vulgaris HOM05D005271 ORTHO05D006072 1.7e-12 76.3 68 55.9
Eucgr.H02355 Eucalyptus grandis HOM05D005271 ORTHO05D006072 3.2e-11 72.0 75 49.3
CSS0024418 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 5.4e-11 71.2 76 53.9
AUR62004132 Chenopodium quinoa HOM05D005271 ORTHO05D006072 2.7e-10 68.9 59 57.6
PGSC0003DMG400010917 Solanum tuberosum HOM05D005271 ORTHO05D006072 2.3e-09 65.9 57 50.9
Aqoxy3G03156 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 1.9e-08 62.8 53 54.7
CBR_g30301 Chara braunii HOM05D005271 ORTHO05D006072 3.3e-08 62.0 77 41.6


User provided reference genes

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