Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 1.2e-155 553.1 282 100.0
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 1.3e-80 303.9 282 59.6
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 2.3e-74 283.1 288 55.6
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 8.3e-72 274.6 290 52.8
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 2.7e-70 269.6 307 53.1
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 1.6e-59 233.8 290 45.9
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 2.0e-57 226.9 290 46.6
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 3.4e-57 226.1 288 45.8
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 5.8e-57 225.3 295 44.7
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 7.5e-57 224.9 284 48.2
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 8.3e-56 221.5 264 48.1
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 1.1e-55 221.1 295 45.1
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 3.2e-55 219.5 289 46.7
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 5.4e-55 218.8 294 45.2
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 1.6e-54 217.2 288 45.1
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 2.1e-54 216.9 297 44.4
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 4.6e-54 215.7 294 45.2
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 4.6e-54 215.7 294 45.2
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 2.3e-53 213.4 282 46.1
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 3.9e-53 212.6 296 43.6
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 3.3e-52 209.5 295 44.4
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 1.2e-51 207.6 288 44.1
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 1.2e-51 207.6 298 42.6
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 2.1e-51 206.8 294 45.2
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 2.8e-51 206.5 291 43.6
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 1.8e-50 203.8 290 42.8
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 1.8e-50 203.8 290 42.8
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 1.8e-50 203.8 326 40.5
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 6.8e-50 201.8 288 46.5
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 6.8e-50 201.8 289 44.3
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 2.0e-49 200.3 299 43.1
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 5.8e-49 198.7 294 44.2
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 7.6e-49 198.4 290 42.4
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 6.4e-48 195.3 289 41.5
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 6.4e-48 195.3 337 39.2
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 1.1e-47 194.5 293 41.6
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 1.4e-47 194.1 289 41.5
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 1.6e-46 190.7 287 42.9
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 1.6e-46 190.7 295 40.7
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 2.7e-46 189.9 289 40.1
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 2.3e-45 186.8 277 43.3
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 5.1e-45 185.7 290 41.0
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 2.5e-44 183.3 383 34.7
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 4.3e-44 182.6 294 40.5
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 7.3e-44 181.8 290 39.3
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 7.3e-44 181.8 292 40.8
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 2.8e-43 179.9 289 39.8
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 3.6e-43 179.5 289 42.2
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 1.8e-42 177.2 214 49.5
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 1.5e-41 174.1 288 40.3
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 2.6e-41 173.3 257 40.1
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 3.4e-41 172.9 276 42.8
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 7.6e-41 171.8 398 32.7
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 9.9e-41 171.4 278 42.4
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 1.3e-40 171.0 245 42.0
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 1.7e-40 170.6 237 42.6
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 3.8e-40 169.5 317 38.2
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 4.9e-40 169.1 257 42.8
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 4.9e-40 169.1 291 37.8
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 6.4e-40 168.7 297 38.0
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 8.4e-40 168.3 210 44.8
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.1e-39 167.9 260 39.6
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 3.2e-39 166.4 290 37.9
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 3.2e-39 166.4 247 40.5
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 5.4e-39 165.6 306 38.9
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 9.3e-39 164.9 306 38.6
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 1.6e-38 164.1 271 41.3
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 2.7e-38 163.3 235 43.8
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 2.7e-38 163.3 240 40.8
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 3.5e-38 162.9 287 36.9
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 3.5e-38 162.9 291 40.5
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 6.0e-38 162.2 263 40.3
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 6.0e-38 162.2 288 38.9
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 1.7e-37 160.6 290 39.3
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 3.0e-37 159.8 213 46.0
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 6.6e-37 158.7 260 38.1
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 6.6e-37 158.7 263 38.4
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 6.6e-37 158.7 239 41.8
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 1.1e-36 157.9 203 45.8
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 4.3e-36 156.0 328 37.2
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 1.3e-35 154.5 289 38.8
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 1.3e-35 154.5 256 39.8
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 2.1e-35 153.7 328 36.9
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 3.6e-35 152.9 289 38.4
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 3.6e-35 152.9 358 34.9
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 1.4e-34 151.0 270 38.1
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 1.8e-34 150.6 314 36.3
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 2.4e-34 150.2 381 31.5
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 2.4e-34 150.2 290 37.9
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 6.9e-34 148.7 268 38.4
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 9.0e-34 148.3 214 46.3
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 1.5e-33 147.5 233 39.5
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 2.6e-33 146.7 280 36.8
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 4.4e-33 146.0 210 41.9
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 4.4e-33 146.0 210 41.9
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 5.8e-33 145.6 300 35.0
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 2.2e-32 143.7 207 42.0
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 2.9e-32 143.3 283 38.2
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 4.9e-32 142.5 225 40.0
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 8.4e-32 141.7 226 38.1
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 8.4e-32 141.7 291 39.2
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 1.1e-31 141.4 313 36.1
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 3.9e-29 132.9 166 44.0
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 6.6e-29 132.1 168 49.4
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 3.3e-28 129.8 211 39.3
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 9.6e-28 128.3 327 34.6
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 1.6e-27 127.5 171 45.0
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 1.1e-26 124.8 299 31.4
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 3.1e-26 123.2 147 49.0
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 6.9e-26 122.1 157 45.9
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 9.0e-26 121.7 260 33.5
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 2.6e-25 120.2 227 36.6
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 4.5e-25 119.4 298 32.2
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 7.6e-25 118.6 301 31.6
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 9.9e-25 118.2 298 32.2
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 9.9e-25 118.2 298 32.2
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 2.9e-24 116.7 298 31.9
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 3.2e-23 113.2 298 31.5
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 1.3e-21 107.8 182 42.9
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 2.3e-21 107.1 297 32.0
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 1.5e-20 104.4 307 31.6
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 2.8e-19 100.1 175 37.1
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 6.2e-19 99.0 208 39.9
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 8.1e-19 98.6 324 27.2
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 1.8e-18 97.4 208 39.4
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 3.4e-17 93.2 258 33.7
Ca_10423_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 1.3e-16 91.3 261 33.0
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 1.3e-16 91.3 304 31.9
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 6.5e-16 89.0 300 27.3
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 1.9e-15 87.4 287 30.0
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 1.9e-15 87.4 214 34.6
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 2.5e-15 87.0 301 28.2
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 4.2e-15 86.3 177 37.9
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 9.3e-15 85.1 213 33.3
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 1.2e-14 84.7 303 26.7
Lalb_Chr21g0312751 Lupinus albus HOM05D005413 ORTHO05D006536 4.6e-14 82.8 248 33.9
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 1.3e-11 74.7 89 41.6
Dinv03808 Davidia involucrata HOM05D005413 ORTHO05D006536 1.8e-10 70.9 107 37.4
Hma1.2p1_0298F.1_g117400 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 4.1e-10 69.7 119 37.8
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 3.4e-09 66.6 118 42.4
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 1.3e-08 64.7 83 43.4
Aa31LG10G16270 Aethionema arabicum HOM05D005852 ORTHO05D006688 6.5e-08 62.4 112 39.3
CBR_g31172 Chara braunii HOM05D005852 ORTHO05D006688 8.4e-08 62.0 72 52.8
ATR0693G434 Amborella trichopoda HOM05D005852 ORTHO05D006688 4.2e-07 59.7 261 26.1
Pp3c1_21140 Physcomitrium patens HOM05D005852 ORTHO05D006688 4.6e-06 56.2 225 28.9


User provided reference genes

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