Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1102G026 Amborella trichopoda HOM05D005490 ORTHO05D006606 3.5e-241 838.2 524 100.0
Nn5g30300 Nelumbo nucifera HOM05D005490 ORTHO05D006606 2.0e-164 583.2 502 69.1
CiPaw.01G018200 Carya illinoinensis HOM05D005490 ORTHO05D006606 2.6e-159 566.2 488 66.6
Dinv29986 Davidia involucrata HOM05D005490 ORTHO05D006606 9.1e-157 557.8 530 64.9
Ciclev10025320m.g Citrus clementina HOM05D005490 ORTHO05D006606 5.9e-156 555.1 503 67.2
Gohir.D11G199100 Gossypium hirsutum HOM05D005490 ORTHO05D006606 1.7e-155 553.5 485 65.4
GSVIVG01022130001 Vitis vinifera HOM05D005490 ORTHO05D006606 2.9e-155 552.7 508 67.9
Lj7A69T47 Lonicera japonica HOM05D005490 ORTHO05D006606 6.5e-155 551.6 541 62.5
QL06p041379 Quercus lobata HOM05D005490 ORTHO05D006606 6.5e-155 551.6 521 64.5
TWI09G1398 Tripterygium wilfordii HOM05D005490 ORTHO05D006606 1.6e-153 547.0 488 67.2
RcHm_v2.0_Chr2g0105671 Rosa chinensis HOM05D005490 ORTHO05D006606 1.0e-152 544.3 502 65.7
Manes.12G106800 Manihot esculenta HOM05D005490 ORTHO05D006606 1.8e-152 543.5 489 67.5
Cfa004023 Carpinus fangiana HOM05D005490 ORTHO05D006606 7.5e-151 538.1 487 67.1
Duzib187G0068 Durio zibethinus HOM05D005490 ORTHO05D006606 1.3e-150 537.3 512 62.9
Thecc.01G056300 Theobroma cacao HOM05D005490 ORTHO05D006606 1.7e-150 537.0 489 65.4
Actinidia03792 Actinidia chinensis HOM05D005490 ORTHO05D006606 3.7e-150 535.8 502 65.5
Cc07_g05990 Coffea canephora HOM05D005490 ORTHO05D006606 6.3e-150 535.0 487 67.1
Prupe.7G133300 Prunus persica HOM05D005490 ORTHO05D006606 9.1e-149 531.2 486 64.4
FAN28G1226 Fragaria x ananassa HOM05D005490 ORTHO05D006606 7.7e-148 528.1 516 64.0
DCAR_025733 Daucus carota HOM05D005490 ORTHO05D006606 1.3e-147 527.3 514 62.6
Potri.007G044100 Populus trichocarpa HOM05D005490 ORTHO05D006606 1.3e-147 527.3 489 65.2
CDE08G0045 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 2.9e-147 526.2 510 62.2
FAN19G0012 Fragaria x ananassa HOM05D005490 ORTHO05D006606 2.9e-147 526.2 500 64.2
Sc03g0001580 Simmondsia chinensis HOM05D005490 ORTHO05D006606 7.2e-146 521.5 487 66.5
Gohir.A11G192400 Gossypium hirsutum HOM05D005490 ORTHO05D006606 1.6e-145 520.4 483 62.3
Gorai.007G213300 Gossypium raimondii HOM05D005490 ORTHO05D006606 2.1e-145 520.0 499 62.5
Hma1.2p1_0461F.1_g157810 Hydrangea macrophylla HOM05D005490 ORTHO05D006606 6.1e-145 518.5 504 64.9
PSO170G3823 Papaver somniferum HOM05D005490 ORTHO05D006606 6.1e-145 518.5 452 68.1
HanXRQChr14g0442791 Helianthus annuus HOM05D005490 ORTHO05D006606 1.0e-144 517.7 485 64.3
Lalb_Chr05g0213291 Lupinus albus HOM05D005490 ORTHO05D006606 1.8e-144 516.9 491 62.7
PSO210G6251 Papaver somniferum HOM05D005490 ORTHO05D006606 1.8e-144 516.9 452 67.9
Oeu062437.1 Olea europaea HOM05D005490 ORTHO05D006606 3.0e-144 516.2 503 66.2
Lj2g0003149 Lotus japonicus HOM05D005490 ORTHO05D006606 5.2e-144 515.4 489 62.2
TPR.G30705 Trifolium pratense HOM05D005490 ORTHO05D006606 1.5e-143 513.8 502 64.3
Oeu031525.2 Olea europaea HOM05D005490 ORTHO05D006606 7.5e-143 511.5 502 63.9
Sed0007368 Sechium edule HOM05D005490 ORTHO05D006606 1.3e-142 510.8 494 63.8
Glyma.01G186000 Glycine max HOM05D005490 ORTHO05D006606 1.4e-141 507.3 525 59.2
CANSAT01G1717 Cannabis sativa HOM05D005490 ORTHO05D006606 4.1e-141 505.8 455 64.2
Psat2g166360 Pisum sativum HOM05D005490 ORTHO05D006606 9.2e-141 504.6 525 59.4
Nitab4.5_0002016g0110 Nicotiana tabacum HOM05D005490 ORTHO05D006606 3.5e-140 502.7 488 61.3
Sp7g34780 Schrenkiella parvula HOM05D005490 ORTHO05D006606 4.5e-140 502.3 504 62.1
Lsat_1_v5_gn_2_84101 Lactuca sativa HOM05D005490 ORTHO05D006606 5.9e-140 501.9 509 61.3
CSS0049924 Camellia sinensis var. sinensis HOM05D005490 ORTHO05D006606 1.3e-139 500.7 489 62.6
arahy.Tifrunner.gnm1.ann1.JF37M9 Arachis hypogaea HOM05D005490 ORTHO05D006606 2.3e-139 500.0 488 63.9
CDE06G1923 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 6.6e-139 498.4 468 63.2
COL.COLO4_11415 Corchorus olitorius HOM05D005490 ORTHO05D006606 7.3e-138 495.0 449 65.5
Gohir.A02G157300 Gossypium hirsutum HOM05D005490 ORTHO05D006606 9.5e-138 494.6 485 62.3
VMungo1215G3252 Vigna mungo HOM05D005490 ORTHO05D006606 1.6e-137 493.8 488 63.5
Medtr5g017430 Medicago truncatula HOM05D005490 ORTHO05D006606 2.1e-137 493.4 501 62.7
THA.LOC104804216 Tarenaya hassleriana HOM05D005490 ORTHO05D006606 2.8e-137 493.0 492 62.4
EL10Ac6g15745 Beta vulgaris HOM05D005490 ORTHO05D006606 6.1e-137 491.9 521 61.6
Thhalv10025018m.g Eutrema salsugineum HOM05D005490 ORTHO05D006606 6.1e-137 491.9 511 61.1
CsaV3_2G016660 Cucumis sativus L. HOM05D005490 ORTHO05D006606 1.0e-136 491.1 458 63.5
Carub.0007s0317 Capsella rubella HOM05D005490 ORTHO05D006606 1.8e-136 490.3 491 62.3
A01p01850 Brassica napus HOM05D005490 ORTHO05D006606 3.0e-136 489.6 489 62.6
BraA01t00174Z Brassica rapa HOM05D005490 ORTHO05D006606 3.0e-136 489.6 489 62.6
AT4G36980 Arabidopsis thaliana HOM05D005490 ORTHO05D006606 4.0e-136 489.2 504 62.9
Migut.H00433 Erythranthe guttata HOM05D005490 ORTHO05D006606 2.6e-135 486.5 489 61.1
Aa31LG6G13990 Aethionema arabicum HOM05D005490 ORTHO05D006606 7.5e-135 485.0 517 58.2
C01p01990 Brassica napus HOM05D005490 ORTHO05D006606 9.8e-135 484.6 489 60.9
Hund16323 Selenicereus undatus HOM05D005490 ORTHO05D006606 2.9e-134 483.0 481 63.0
Phvul.002G018900 Phaseolus vulgaris HOM05D005490 ORTHO05D006606 1.4e-133 480.7 507 61.3
AL7G13750 Arabidopsis lyrata HOM05D005490 ORTHO05D006606 5.4e-133 478.8 489 61.8
Gorai.003G025100 Gossypium raimondii HOM05D005490 ORTHO05D006606 1.6e-132 477.2 483 62.5
BolC1t00193H Brassica oleracea HOM05D005490 ORTHO05D006606 1.7e-131 473.8 500 59.4
Os03g0395900 Oryza sativa ssp. japonica HOM05D005490 ORTHO05D006606 5.0e-131 472.2 452 62.4
arahy.Tifrunner.gnm1.ann1.5GG3L5 Arachis hypogaea HOM05D005490 ORTHO05D006606 4.3e-130 469.2 517 59.2
Ca_24770_v3 Cicer arietinum L. HOM05D005490 ORTHO05D006606 5.6e-130 468.8 501 60.3
Solyc02g090850.3 Solanum lycopersicum HOM05D005490 ORTHO05D006606 5.6e-130 468.8 452 59.7
HPP92_004114 Vanilla planifolia HOM05D005490 ORTHO05D006606 7.3e-130 468.4 487 58.5
ECA238G0711 Erigeron canadensis HOM05D005490 ORTHO05D006606 9.5e-130 468.0 527 59.2
CAN.G660.7 Capsicum annuum HOM05D005490 ORTHO05D006606 1.2e-129 467.6 454 61.0
ClCG02G012530 Citrullus lanatus HOM05D005490 ORTHO05D006606 1.2e-129 467.6 503 57.3
PGSC0003DMG400004042 Solanum tuberosum HOM05D005490 ORTHO05D006606 1.6e-129 467.2 452 60.0
Gohir.D03G023600 Gossypium hirsutum HOM05D005490 ORTHO05D006606 3.6e-129 466.1 449 64.4
Sabra07G0038800 Salix brachista HOM05D005490 ORTHO05D006606 3.6e-129 466.1 504 57.5
Glyma.11G056000 Glycine max HOM05D005490 ORTHO05D006606 8.9e-128 461.5 528 60.6
CARHR245520 Cardamine hirsuta HOM05D005490 ORTHO05D006606 7.5e-127 458.4 503 58.8
TAR381G1106 Trochodendron aralioides HOM05D005490 ORTHO05D006606 1.2e-124 451.1 375 70.9
Aqoxy5G01229 Aquilegia oxysepala HOM05D005490 ORTHO05D006606 1.1e-122 444.5 375 66.9
SGA_v2.0_scaffold15G07303 Striga asiatica HOM05D005490 ORTHO05D006606 1.1e-122 444.5 453 61.1
AUR62001928 Chenopodium quinoa HOM05D005490 ORTHO05D006606 2.1e-121 440.3 535 55.3
BcaNung02520 Brassica carinata HOM05D005490 ORTHO05D006606 2.3e-120 436.8 463 59.8
MD02G1172000 Malus domestica HOM05D005490 ORTHO05D006606 1.7e-118 430.6 376 64.9
FAN26G0668 Fragaria x ananassa HOM05D005490 ORTHO05D006606 6.4e-110 402.1 390 61.0
Peaxi162Scf00450g00420 Petunia axillaris HOM05D005490 ORTHO05D006606 2.4e-109 400.2 498 50.2
Potri.005G138200 Populus trichocarpa HOM05D005490 ORTHO05D006606 3.2e-109 399.8 376 61.7
FAN23G2111 Fragaria x ananassa HOM05D005490 ORTHO05D006606 3.3e-106 389.8 390 59.7
Mapoly0012s0107 Marchantia polymorpha HOM05D005490 ORTHO05D006606 2.1e-100 370.5 465 55.1
Nitab4.5_0002440g0010 Nicotiana tabacum HOM05D005490 ORTHO05D006606 6.0e-100 369.0 503 49.1
Sabra05G0112300 Salix brachista HOM05D005490 ORTHO05D006606 4.8e-97 359.4 527 50.1
unitig_899.g14662 Utricularia gibba HOM05D005490 ORTHO05D006606 4.3e-90 336.3 377 59.9
Ah.03g145080 Amaranthus hybridus HOM05D005490 ORTHO05D006606 2.8e-89 333.6 386 57.3
AUR62003882 Chenopodium quinoa HOM05D005490 ORTHO05D006606 6.2e-89 332.4 477 48.0
Rhsim08G0100400 Rhododendron simsii HOM05D005490 ORTHO05D006606 5.1e-83 312.8 452 52.0
Hma1.2p1_0461F.1_g157800 Hydrangea macrophylla HOM05D005490 ORTHO05D006606 7.4e-82 308.9 370 62.2
Pp3c11_20900 Physcomitrium patens HOM05D005490 ORTHO05D006606 4.8e-81 306.2 521 47.6
Pp3c7_5520 Physcomitrium patens HOM05D005490 ORTHO05D006606 1.5e-79 301.2 522 44.8
FvH4_1g16060 Fragaria vesca HOM05D005490 ORTHO05D006606 1.3e-78 298.1 345 57.4
vmacro17955 Vaccinium macrocarpon HOM05D005490 ORTHO05D006606 4.2e-77 293.1 393 57.0
Eucgr.I00926 Eucalyptus grandis HOM05D005490 ORTHO05D006606 3.0e-75 287.0 363 54.0
Dinv39848 Davidia involucrata HOM05D005490 ORTHO05D006606 8.2e-73 278.9 290 63.1
MD15G1284300 Malus domestica HOM05D005490 ORTHO05D006606 1.4e-72 278.1 338 53.8
Atru.chr3.327 Acer truncatum HOM05D005490 ORTHO05D006606 2.0e-71 274.2 310 58.1
HPP92_004074 Vanilla planifolia HOM05D005490 ORTHO05D006606 1.0e-67 261.9 343 52.5
SEGI_41077 Sequoiadendron giganteum HOM05D005490 ORTHO05D006606 2.2e-65 254.2 381 58.3
SEGI_00791 Sequoiadendron giganteum HOM05D005490 ORTHO05D006606 8.2e-65 252.3 154 80.5
MELO3C020875.2 Cucumis melo HOM05D005490 ORTHO05D006606 1.1e-64 251.9 317 55.5
SMO356G0652 Selaginella moellendorffii HOM05D005490 ORTHO05D006606 4.2e-61 240.0 243 59.7
Atru.chr3.328 Acer truncatum HOM05D005490 ORTHO05D006606 2.2e-57 227.6 128 86.7
Cpa.g.sc55.148 Carica papaya HOM05D005490 ORTHO05D006606 3.7e-57 226.9 128 86.7
Zm00001eb019290 Zea mays HOM05D005490 ORTHO05D006606 7.7e-55 219.2 274 56.6
MD15G1284200 Malus domestica HOM05D005490 ORTHO05D006606 3.3e-50 203.8 128 81.2
Haze_15401 Corylus avellana HOM05D005490 ORTHO05D006606 5.3e-48 196.4 252 58.3
Haze_15403 Corylus avellana HOM05D005490 ORTHO05D006606 2.6e-47 194.1 252 58.3
CBR_g38045 Chara braunii HOM05D005490 ORTHO05D000004 5.5e-45 186.4 456 39.9
Actinidia16483 Actinidia chinensis HOM05D005490 ORTHO05D006606 3.1e-40 170.6 321 46.1
Sopen02g035470 Solanum pennellii HOM05D005490 ORTHO05D006606 7.0e-40 169.5 242 45.5
Actinidia16484 Actinidia chinensis HOM05D005490 ORTHO05D006606 1.0e-35 155.6 84 85.7
Actinidia36493 Actinidia chinensis HOM05D005490 ORTHO05D006606 1.2e-34 152.1 351 38.5
Aqoxy5G01228 Aquilegia oxysepala HOM05D005490 ORTHO05D006606 7.7e-31 139.4 112 74.1
CSS0031445 Camellia sinensis var. sinensis HOM05D005490 ORTHO05D006606 1.5e-29 135.2 129 74.4
VMungo1309G0325 Vigna mungo HOM05D005490 ORTHO05D006606 3.3e-29 134.0 159 51.6
MD02G1172100 Malus domestica HOM05D005490 ORTHO05D006606 5.2e-27 126.7 127 69.3
VMungo0720G1861 Vigna mungo HOM05D005490 ORTHO05D006606 1.7e-25 121.7 142 50.7
CDE08G1038 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 4.9e-25 120.2 380 29.7
AagrBONN_evm.TU.Sc2ySwM_344.4468 Anthoceros agrestis HOM05D005490 ORTHO05D006606 8.3e-25 119.4 468 31.2
SHI08459 Sapria himalayana HOM05D005490 ORTHO05D006606 5.4e-24 116.7 279 34.1
FAN22G1581 Fragaria x ananassa HOM05D005490 ORTHO05D006606 3.8e-22 110.5 70 77.1
TAR381G1012 Trochodendron aralioides HOM05D005490 ORTHO05D006606 5.0e-22 110.2 92 80.4
FAN17G2271 Fragaria x ananassa HOM05D005490 ORTHO05D006606 4.3e-21 107.1 66 80.3
FAN17G1267 Fragaria x ananassa HOM05D005490 ORTHO05D006606 1.3e-17 95.5 64 78.1
VMungo0251G2361 Vigna mungo HOM05D007793 ORTHO05D010104 5.4e-16 90.1 84 52.4
Actinidia36494 Actinidia chinensis HOM05D005490 ORTHO05D006606 1.6e-15 88.6 80 71.2
VMungo1309G1585 Vigna mungo HOM05D005490 ORTHO05D006606 2.0e-15 88.2 85 55.3
Atru.chr10.1611 Acer truncatum HOM05D005490 ORTHO05D006606 8.0e-12 76.3 50 76.0
Cre12.g498350 Chlamydomonas reinhardtii HOM05D005490 ORTHO05D006606 2.0e-10 71.6 288 26.7


User provided reference genes

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