Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1101G068 Amborella trichopoda HOM05D000045 ORTHO05D011303 1.1e-47 193.0 97 100.0
Peaxi162Scf00071g02210 Petunia axillaris HOM05D000045 ORTHO05D001346 1.5e-12 76.3 73 50.7
TPR.G21798 Trifolium pratense HOM05D000045 ORTHO05D001346 7.4e-12 73.9 74 51.4
MBI18_g24953_MAGBIO Magnolia biondii HOM05D000045 ORTHO05D001346 1.3e-11 73.2 73 53.4
MBI06_g32163_MAGBIO Magnolia biondii HOM05D000045 ORTHO05D001346 1.6e-11 72.8 73 50.7
Migut.B00731 Erythranthe guttata HOM05D000045 ORTHO05D001346 4.8e-11 71.2 73 49.3
AUR62032468 Chenopodium quinoa HOM05D000045 ORTHO05D001346 8.2e-11 70.5 73 50.7
Hma1.2p1_1324F.1_g275680 Hydrangea macrophylla HOM05D000045 ORTHO05D001346 8.2e-11 70.5 73 50.7
Nn4g24595 Nelumbo nucifera HOM05D000045 ORTHO05D001346 8.2e-11 70.5 73 52.1
TPR.G36419 Trifolium pratense HOM05D000045 ORTHO05D001346 1.4e-10 69.7 74 48.6
EL10Ac6g14028 Beta vulgaris HOM05D000045 ORTHO05D001346 1.8e-10 69.3 73 49.3
RcHm_v2.0_Chr7g0219621 Rosa chinensis HOM05D000045 ORTHO05D001346 1.8e-10 69.3 73 50.7
Sed0027343 Sechium edule HOM05D000045 ORTHO05D001346 1.8e-10 69.3 73 49.3
MSTRG.16475 Avicennia marina HOM05D000045 ORTHO05D001346 2.4e-10 68.9 73 47.9
AUR62017439 Chenopodium quinoa HOM05D000045 ORTHO05D001346 3.1e-10 68.6 73 49.3
FvH4_5g27741 Fragaria vesca HOM05D000045 ORTHO05D001346 3.1e-10 68.6 79 45.6
Lj5A281T52 Lonicera japonica HOM05D000045 ORTHO05D001346 3.1e-10 68.6 73 47.9
Eucgr.G00085 Eucalyptus grandis HOM05D000045 ORTHO05D001346 4.1e-10 68.2 73 49.3
THA.LOC104816753 Tarenaya hassleriana HOM05D000045 ORTHO05D001346 4.1e-10 68.2 73 46.6
ECA234G0373 Erigeron canadensis HOM05D000045 ORTHO05D001346 5.3e-10 67.8 73 49.3
HanXRQChr10g0294671 Helianthus annuus HOM05D000045 ORTHO05D001346 5.3e-10 67.8 73 49.3
TPR.G2092 Trifolium pratense HOM05D000045 ORTHO05D001346 6.9e-10 67.4 73 49.3
TAR627G0501 Trochodendron aralioides HOM05D000045 ORTHO05D001346 6.9e-10 67.4 73 52.1
vmacro01687 Vaccinium macrocarpon HOM05D000045 ORTHO05D001346 6.9e-10 67.4 73 47.9
CAN.G855.37 Capsicum annuum HOM05D000045 ORTHO05D001346 9.0e-10 67.0 73 47.9
MELO3C033451.2 Cucumis melo HOM05D000045 ORTHO05D001346 9.0e-10 67.0 79 44.3
MBI19_g29993_MAGBIO Magnolia biondii HOM05D000045 ORTHO05D001346 9.0e-10 67.0 75 48.0
Prupe.1G583000 Prunus persica HOM05D000045 ORTHO05D001346 9.0e-10 67.0 73 46.6
Actinidia00157 Actinidia chinensis HOM05D000045 ORTHO05D001346 1.2e-09 66.6 73 47.9
CiPaw.06G176100 Carya illinoinensis HOM05D000045 ORTHO05D001346 1.2e-09 66.6 73 49.3
ClCG11G000450 Citrullus lanatus HOM05D000045 ORTHO05D001346 1.2e-09 66.6 75 44.0
CsaV3_5G014020 Cucumis sativus L. HOM05D000045 ORTHO05D001346 1.2e-09 66.6 73 46.6
Dinv29667 Davidia involucrata HOM05D000045 ORTHO05D001346 1.2e-09 66.6 73 47.9
MD09G1270100 Malus domestica HOM05D000045 ORTHO05D001346 1.2e-09 66.6 73 47.9
QL02p102405 Quercus lobata HOM05D000045 ORTHO05D001346 1.2e-09 66.6 73 47.9
QL02p103043 Quercus lobata HOM05D000045 ORTHO05D001346 1.2e-09 66.6 73 47.9
VMungo0397G0001 Vigna mungo HOM05D000045 ORTHO05D011303 1.2e-09 66.6 72 48.6
CSS0035244 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D001346 1.5e-09 66.2 73 46.6
Ca_00024_v3 Cicer arietinum L. HOM05D000045 ORTHO05D001346 1.5e-09 66.2 73 47.9
Glyma.10G001400 Glycine max HOM05D000045 ORTHO05D001346 1.5e-09 66.2 73 47.9
Nitab4.5_0001057g0060 Nicotiana tabacum HOM05D000045 ORTHO05D001346 1.5e-09 66.2 73 47.9
Phvul.006G220900 Phaseolus vulgaris HOM05D000045 ORTHO05D001346 1.5e-09 66.2 73 47.9
Psat1g223880 Pisum sativum HOM05D000045 ORTHO05D001346 1.5e-09 66.2 73 47.9
Rhsim11G0118700 Rhododendron simsii HOM05D000045 ORTHO05D001346 1.5e-09 66.2 74 44.6
Sabra01G0172600 Salix brachista HOM05D000045 ORTHO05D001346 1.5e-09 66.2 73 49.3
Sopen01g045590 Solanum pennellii HOM05D000045 ORTHO05D001346 1.5e-09 66.2 73 47.9
GSVIVG01028082001 Vitis vinifera HOM05D000045 ORTHO05D001346 1.5e-09 66.2 77 46.8
arahy.Tifrunner.gnm1.ann1.RBX3HB Arachis hypogaea HOM05D000045 ORTHO05D001346 2.0e-09 65.9 73 49.3
Haze_10008 Corylus avellana HOM05D000045 ORTHO05D001346 2.0e-09 65.9 73 47.9
Duzib170G0238 Durio zibethinus HOM05D000045 ORTHO05D001346 2.0e-09 65.9 73 46.6
Lalb_Chr15g0090851 Lupinus albus HOM05D000045 ORTHO05D001346 2.0e-09 65.9 73 47.9
Nn3g21620 Nelumbo nucifera HOM05D000045 ORTHO05D001346 2.0e-09 65.9 73 50.7
Nitab4.5_0001129g0080 Nicotiana tabacum HOM05D000045 ORTHO05D001346 2.0e-09 65.9 73 47.9
Nitab4.5_0003719g0040 Nicotiana tabacum HOM05D000045 ORTHO05D001346 2.0e-09 65.9 73 45.2
Solyc01g103180.4 Solanum lycopersicum HOM05D000045 ORTHO05D001346 2.0e-09 65.9 73 47.9
TWI59G0416 Tripterygium wilfordii HOM05D000045 ORTHO05D001346 2.0e-09 65.9 73 47.9
VMungo0540G0739 Vigna mungo HOM05D000045 ORTHO05D001346 2.0e-09 65.9 73 47.9
GSVIVG01023200001 Vitis vinifera HOM05D000045 ORTHO05D001346 2.0e-09 65.9 73 49.3
Ah.02g128360 Amaranthus hybridus HOM05D000045 ORTHO05D001346 2.6e-09 65.5 73 46.6
arahy.Tifrunner.gnm1.ann1.Z2KB3N Arachis hypogaea HOM05D000045 ORTHO05D001346 2.6e-09 65.5 73 47.9
Cpa.g.sc113.2 Carica papaya HOM05D000045 ORTHO05D001346 2.6e-09 65.5 73 47.9
CsaV3_UNG168310 Cucumis sativus L. HOM05D000045 ORTHO05D001346 2.6e-09 65.5 74 44.6
Gohir.A09G104800 Gossypium hirsutum HOM05D000045 ORTHO05D001346 2.6e-09 65.5 73 47.9
Gohir.D09G101500 Gossypium hirsutum HOM05D000045 ORTHO05D001346 2.6e-09 65.5 73 47.9
Lj1C20T10 Lonicera japonica HOM05D000045 ORTHO05D001346 2.6e-09 65.5 77 44.2
Lj6g0000593 Lotus japonicus HOM05D000045 ORTHO05D001346 2.6e-09 65.5 73 49.3
Potri.004G227600 Populus trichocarpa HOM05D000045 ORTHO05D001346 2.6e-09 65.5 73 49.3
Hund15409 Selenicereus undatus HOM05D000045 ORTHO05D001346 2.6e-09 65.5 73 47.9
CDE02G1527 Ceratophyllum demersum HOM05D000045 ORTHO05D001346 3.4e-09 65.1 73 45.2
COL.COLO4_25306 Corchorus olitorius HOM05D000045 ORTHO05D001346 3.4e-09 65.1 73 46.6
Manes.10G110600 Manihot esculenta HOM05D000045 ORTHO05D001346 3.4e-09 65.1 73 46.6
PSO017G3610 Papaver somniferum HOM05D000045 ORTHO05D001346 3.4e-09 65.1 73 45.2
PSO170G0044 Papaver somniferum HOM05D000045 ORTHO05D001346 3.4e-09 65.1 73 45.2
PGR042G0951 Punica granatum HOM05D000045 ORTHO05D001346 3.4e-09 65.1 69 46.4
Thecc.09G264500 Theobroma cacao HOM05D000045 ORTHO05D001346 3.4e-09 65.1 73 46.6
TWI73G0746 Tripterygium wilfordii HOM05D000045 ORTHO05D001346 3.4e-09 65.1 73 47.9
VMungo0540G1117 Vigna mungo HOM05D000045 ORTHO05D011303 3.4e-09 65.1 72 45.8
Atru.chr6.353 Acer truncatum HOM05D000045 ORTHO05D001346 4.5e-09 64.7 73 46.6
AL1G20950 Arabidopsis lyrata HOM05D000045 ORTHO05D001346 4.5e-09 64.7 73 46.6
A06p06890 Brassica napus HOM05D000045 ORTHO05D001346 4.5e-09 64.7 73 46.6
BraA06t23904Z Brassica rapa HOM05D000045 ORTHO05D001346 4.5e-09 64.7 73 46.6
CANSAT01G0267 Cannabis sativa HOM05D000045 ORTHO05D001346 4.5e-09 64.7 73 45.2
Carub.0001s0965 Capsella rubella HOM05D000045 ORTHO05D001346 4.5e-09 64.7 73 46.6
CARHR010360 Cardamine hirsuta HOM05D000045 ORTHO05D001346 4.5e-09 64.7 73 46.6
Thhalv10006984m.g Eutrema salsugineum HOM05D000045 ORTHO05D001346 4.5e-09 64.7 73 46.6
Lj4g0011792 Lotus japonicus HOM05D000045 ORTHO05D001346 4.5e-09 64.7 73 46.6
PSO761G0468 Papaver somniferum HOM05D000045 ORTHO05D001346 4.5e-09 64.7 73 49.3
Peaxi162Scf00011g01634 Petunia axillaris HOM05D000045 ORTHO05D001346 4.5e-09 64.7 73 47.9
VMungo0720G0135 Vigna mungo HOM05D000045 ORTHO05D001346 4.5e-09 64.7 68 48.5
C05p08370 Brassica napus HOM05D000045 ORTHO05D001346 5.9e-09 64.3 73 46.6
BolC5t29588H Brassica oleracea HOM05D000045 ORTHO05D001346 5.9e-09 64.3 73 46.6
Lj6g0023332 Lotus japonicus HOM05D000045 ORTHO05D001346 7.6e-09 63.9 72 47.2
Sp1g08850 Schrenkiella parvula HOM05D000045 ORTHO05D001346 7.6e-09 63.9 73 46.6
VMungo1383G3059 Vigna mungo HOM05D000045 ORTHO05D011303 7.6e-09 63.9 72 47.2
Dinv33097 Davidia involucrata HOM05D000045 ORTHO05D001346 1.0e-08 63.5 73 45.2
Lj3g0003429 Lotus japonicus HOM05D000045 ORTHO05D001346 1.0e-08 63.5 72 48.6
TAR365G0576 Trochodendron aralioides HOM05D000045 ORTHO05D001346 1.0e-08 63.5 72 48.6
Eucgr.K03522 Eucalyptus grandis HOM05D000045 ORTHO05D001346 1.3e-08 63.2 77 40.3
Gorai.006G118900 Gossypium raimondii HOM05D000045 ORTHO05D001346 1.3e-08 63.2 79 44.3
AT1G10240 Arabidopsis thaliana HOM05D000045 ORTHO05D001346 1.7e-08 62.8 73 45.2
Nitab4.5_0000116g0130 Nicotiana tabacum HOM05D000045 ORTHO05D001346 1.7e-08 62.8 77 44.2
Aa31LG1G4680 Aethionema arabicum HOM05D000045 ORTHO05D001346 2.2e-08 62.4 73 45.2
CDE11G0520 Ceratophyllum demersum HOM05D000045 ORTHO05D001346 2.2e-08 62.4 73 47.9
Ciclev10000456m.g Citrus clementina HOM05D000045 ORTHO05D001346 2.2e-08 62.4 73 46.6
Haze_01087 Corylus avellana HOM05D000045 ORTHO05D001346 2.2e-08 62.4 73 45.2
MELO3C032541.2 Cucumis melo HOM05D000045 ORTHO05D001346 2.9e-08 62.0 72 44.4
Nitab4.5_0002058g0060 Nicotiana tabacum HOM05D000045 ORTHO05D001346 2.9e-08 62.0 65 44.6
Peaxi162Scf00204g00057 Petunia axillaris HOM05D000045 ORTHO05D001346 2.9e-08 62.0 54 53.7
PSO210G2335 Papaver somniferum HOM05D000045 ORTHO05D001346 5.0e-08 61.2 73 45.2
Manes.01G225200 Manihot esculenta HOM05D000045 ORTHO05D001346 8.5e-08 60.5 77 41.6
Peaxi162Scf00035g00514 Petunia axillaris HOM05D000045 ORTHO05D001346 1.1e-07 60.1 73 41.1
Prupe.1G125700 Prunus persica HOM05D000045 ORTHO05D001346 1.1e-07 60.1 73 46.6
QL06p011313 Quercus lobata HOM05D000045 ORTHO05D001346 1.1e-07 60.1 73 45.2
MSTRG.17391 Avicennia marina HOM05D000045 ORTHO05D001346 1.4e-07 59.7 77 41.6
Rhsim13G0006600 Rhododendron simsii HOM05D000045 ORTHO05D001346 1.4e-07 59.7 77 44.2
CANSAT78G1905 Cannabis sativa HOM05D000045 ORTHO05D001346 1.9e-07 59.3 68 45.6
CAN.G668.26 Capsicum annuum HOM05D000045 ORTHO05D001346 1.9e-07 59.3 77 41.6
Nitab4.5_0001639g0130 Nicotiana tabacum HOM05D000045 ORTHO05D001346 1.9e-07 59.3 65 44.6
Nitab4.5_0004002g0040 Nicotiana tabacum HOM05D000045 ORTHO05D001346 1.9e-07 59.3 79 39.2
Solyc09g075640.4 Solanum lycopersicum HOM05D000045 ORTHO05D001346 1.9e-07 59.3 77 41.6
GSVIVG01035045001 Vitis vinifera HOM05D000045 ORTHO05D001346 1.9e-07 59.3 73 43.8
Peaxi162Scf00001g00283 Petunia axillaris HOM05D000045 ORTHO05D001346 2.5e-07 58.9 77 44.2
PGR044G0187 Punica granatum HOM05D000045 ORTHO05D001346 2.5e-07 58.9 77 42.9
Aqoxy3G00858 Aquilegia oxysepala HOM05D000045 ORTHO05D001346 3.2e-07 58.5 73 45.2
Actinidia21420 Actinidia chinensis HOM05D000045 ORTHO05D001346 4.2e-07 58.2 77 42.9
VMungo0540G2513 Vigna mungo HOM05D000045 ORTHO05D011303 4.2e-07 58.2 61 50.8
Actinidia27603 Actinidia chinensis HOM05D000045 ORTHO05D001346 5.5e-07 57.8 77 44.2
CSS0044022 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D001346 5.5e-07 57.8 77 44.2
Psat1g158280 Pisum sativum HOM05D000045 ORTHO05D001346 5.5e-07 57.8 73 42.5
Sopen09g030440 Solanum pennellii HOM05D000045 ORTHO05D001346 5.5e-07 57.8 77 41.6
MD13G1158700 Malus domestica HOM05D000045 ORTHO05D001346 9.3e-07 57.0 73 42.5
vmacro02417 Vaccinium macrocarpon HOM05D000045 ORTHO05D001346 9.3e-07 57.0 77 42.9
Peaxi162Scf00150g00126 Petunia axillaris HOM05D000045 ORTHO05D001346 1.2e-06 56.6 60 50.0
Sabra02G0158800 Salix brachista HOM05D000045 ORTHO05D001346 1.2e-06 56.6 76 43.4
Dinv10062 Davidia involucrata HOM05D000045 ORTHO05D001346 1.6e-06 56.2 56 51.8
HanXRQChr13g0393041 Helianthus annuus HOM05D000045 ORTHO05D001346 1.6e-06 56.2 77 39.0
VMungo1309G2873 Vigna mungo HOM05D000045 ORTHO05D001346 2.7e-06 55.5 73 42.5
CiPaw.01G142200 Carya illinoinensis HOM05D000045 ORTHO05D001346 3.6e-06 55.1 73 43.8
Lalb_Chr20g0121001 Lupinus albus HOM05D000045 ORTHO05D001346 3.6e-06 55.1 73 42.5
Os04g0443000 Oryza sativa ssp. japonica HOM05D000045 ORTHO05D001346 3.6e-06 55.1 73 39.7
TPR.G27713 Trifolium pratense HOM05D000045 ORTHO05D001346 3.6e-06 55.1 73 41.1
FvH4_4g19281 Fragaria vesca HOM05D000045 ORTHO05D001346 4.6e-06 54.7 68 44.1
MBI17_g43197_MAGBIO Magnolia biondii HOM05D000045 ORTHO05D001346 4.6e-06 54.7 74 40.5
Phvul.009G253800 Phaseolus vulgaris HOM05D000045 ORTHO05D001346 4.6e-06 54.7 73 42.5
Potri.002G199300 Populus trichocarpa HOM05D000045 ORTHO05D001346 4.6e-06 54.7 76 42.1
RcHm_v2.0_Chr4g0424281 Rosa chinensis HOM05D000045 ORTHO05D001346 6.1e-06 54.3 73 41.1
arahy.Tifrunner.gnm1.ann1.BDP107 Arachis hypogaea HOM05D000045 ORTHO05D001346 7.9e-06 53.9 73 42.5
Lj6g0006221 Lotus japonicus HOM05D000045 ORTHO05D001346 7.9e-06 53.9 73 42.5


User provided reference genes

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