Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1101G066 Amborella trichopoda HOM05D003787 ORTHO05D001736 1.8e-120 436.0 241 100.0
ATR1128G053 Amborella trichopoda HOM05D003787 ORTHO05D001736 8.3e-97 357.5 224 85.7
ATR0177G031 Amborella trichopoda HOM05D003787 ORTHO05D001736 8.3e-89 330.9 285 65.3
ATR1128G011 Amborella trichopoda HOM05D003787 ORTHO05D001736 1.1e-56 224.2 126 91.3
ATR1101G105 Amborella trichopoda HOM05D003787 ORTHO05D001736 6.1e-31 138.7 81 86.4
TAR371G0370 Trochodendron aralioides HOM05D006637 ORTHO05D001736 1.5e-16 90.9 248 34.3
CiPaw.05G124800 Carya illinoinensis HOM05D003787 ORTHO05D001736 4.2e-16 89.4 248 34.3
Duzib268G1106 Durio zibethinus HOM05D003787 ORTHO05D001736 3.0e-14 83.2 228 32.9
MBI19_g14007_MAGBIO Magnolia biondii HOM05D006637 ORTHO05D001736 1.2e-13 81.3 110 48.2
GSVIVG01012223001 Vitis vinifera HOM05D003787 ORTHO05D001736 4.4e-13 79.3 83 54.2
CDE02G2765 Ceratophyllum demersum HOM05D003787 ORTHO05D001736 2.2e-12 77.0 71 53.5
Thecc.02G330000 Theobroma cacao HOM05D003787 ORTHO05D001736 2.2e-12 77.0 91 44.0
CDE05G3272 Ceratophyllum demersum HOM05D003787 ORTHO05D001736 6.3e-12 75.5 220 30.0
TAR622G0628 Trochodendron aralioides HOM05D003787 ORTHO05D001736 6.3e-12 75.5 205 32.2
CDE04G2454 Ceratophyllum demersum HOM05D003787 ORTHO05D001736 1.1e-11 74.7 55 63.6
Duzib251G0768 Durio zibethinus HOM05D003787 ORTHO05D001736 1.1e-11 74.7 117 40.2
Manes.02G055200 Manihot esculenta HOM05D003787 ORTHO05D001736 1.1e-11 74.7 196 34.2
PGR119G1736 Punica granatum HOM05D003787 ORTHO05D001736 1.1e-11 74.7 98 46.9
TWI31G1463 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 1.1e-11 74.7 101 46.5
SHI15724 Sapria himalayana HOM05D003787 ORTHO05D001736 2.4e-11 73.6 84 47.6
Sc10g0009690 Simmondsia chinensis HOM05D006637 ORTHO05D001736 2.4e-11 73.6 79 51.9
TWI60G0888 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 3.1e-11 73.2 162 37.0
vmacro16493 Vaccinium macrocarpon HOM05D006637 ORTHO05D001736 3.1e-11 73.2 125 41.6
Nn3g17457 Nelumbo nucifera HOM05D003787 ORTHO05D001736 4.1e-11 72.8 51 70.6
Potri.008G096300 Populus trichocarpa HOM05D003787 ORTHO05D001736 5.3e-11 72.4 67 56.7
QL03p074082 Quercus lobata HOM05D003787 ORTHO05D001736 7.0e-11 72.0 190 33.2
Cpa.g.sc10.158 Carica papaya HOM05D006637 ORTHO05D001736 1.2e-10 71.2 69 53.6
Prupe.1G287500 Prunus persica HOM05D003787 ORTHO05D001736 1.2e-10 71.2 98 46.9
TWI81G0402 Tripterygium wilfordii HOM05D006637 ORTHO05D001736 1.6e-10 70.9 171 32.2
TAR629G2847 Trochodendron aralioides HOM05D003787 ORTHO05D001736 2.0e-10 70.5 196 32.1
Gohir.D05G306900 Gossypium hirsutum HOM05D003787 ORTHO05D001736 3.5e-10 69.7 112 39.3
Gorai.009G326900 Gossypium raimondii HOM05D003787 ORTHO05D001736 3.5e-10 69.7 112 39.3
Lj2g0021607 Lotus japonicus HOM05D003787 ORTHO05D001736 3.5e-10 69.7 115 40.0
Nn4g23435 Nelumbo nucifera HOM05D006637 ORTHO05D001736 4.5e-10 69.3 61 60.7
Cfa007670 Carpinus fangiana HOM05D003787 ORTHO05D001736 5.9e-10 68.9 158 34.2
PSO017G1216 Papaver somniferum HOM05D006637 ORTHO05D001736 5.9e-10 68.9 58 62.1
PSO478G3423 Papaver somniferum HOM05D006637 ORTHO05D001736 5.9e-10 68.9 58 62.1
Potri.010G158000 Populus trichocarpa HOM05D003787 ORTHO05D001736 5.9e-10 68.9 67 53.7
TAR374G1256 Trochodendron aralioides HOM05D003787 ORTHO05D001736 5.9e-10 68.9 203 35.0
Cc00_g04710 Coffea canephora HOM05D006637 ORTHO05D001736 1.0e-09 68.2 63 60.3
Sabra08G0072600 Salix brachista HOM05D003787 ORTHO05D001736 1.0e-09 68.2 97 46.4
Actinidia17586 Actinidia chinensis HOM05D003787 ORTHO05D001736 1.3e-09 67.8 192 35.9
Aqoxy3G00509 Aquilegia oxysepala HOM05D006637 ORTHO05D001736 1.3e-09 67.8 66 54.5
ClCG05G023700 Citrullus lanatus HOM05D003787 ORTHO05D001736 1.3e-09 67.8 101 43.6
Os07g0298100 Oryza sativa ssp. japonica HOM05D003787 ORTHO05D001736 1.3e-09 67.8 59 57.6
CSS0023913 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 1.7e-09 67.4 184 33.7
Haze_14428 Corylus avellana HOM05D003787 ORTHO05D001736 1.7e-09 67.4 110 38.2
Lalb_Chr06g0174951 Lupinus albus HOM05D003787 ORTHO05D001736 1.7e-09 67.4 133 37.6
SHI06685 Sapria himalayana HOM05D003787 ORTHO05D001736 1.7e-09 67.4 94 42.6
TWI79G0236 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 1.7e-09 67.4 135 37.8
MD13G1062500 Malus domestica HOM05D003787 ORTHO05D001736 2.9e-09 66.6 44 68.2
MELO3C012154.2 Cucumis melo HOM05D003787 ORTHO05D001736 3.8e-09 66.2 54 63.0
Sabra12G0044700 Salix brachista HOM05D006637 ORTHO05D001736 3.8e-09 66.2 204 31.9
VMungo0464G0106 Vigna mungo HOM05D003787 ORTHO05D001736 3.8e-09 66.2 115 36.5
Cfa019342 Carpinus fangiana HOM05D000824 ORTHO05D003555 5.0e-09 65.9 192 30.7
Dinv33830 Davidia involucrata HOM05D003787 ORTHO05D001736 6.5e-09 65.5 57 61.4
Sed0025283 Sechium edule HOM05D003787 ORTHO05D001736 6.5e-09 65.5 134 35.1
HPP92_011441 Vanilla planifolia HOM05D003787 ORTHO05D001736 6.5e-09 65.5 65 52.3
COL.COLO4_27878 Corchorus olitorius HOM05D003787 ORTHO05D001736 8.5e-09 65.1 75 45.3
Lju41C3T13 Lonicera japonica HOM05D003787 ORTHO05D001736 8.5e-09 65.1 60 56.7
PSO478G0913 Papaver somniferum HOM05D006637 ORTHO05D001736 8.5e-09 65.1 125 32.8
Sabra17G0083100 Salix brachista HOM05D003787 ORTHO05D001736 8.5e-09 65.1 97 44.3
CSS0001662 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 1.1e-08 64.7 96 42.7
CANSAT64G2286 Cannabis sativa HOM05D003787 ORTHO05D001736 1.1e-08 64.7 99 45.5
Sabra10G0120000 Salix brachista HOM05D003787 ORTHO05D001736 1.1e-08 64.7 67 50.7
Atru.chr9.567 Acer truncatum HOM05D006637 ORTHO05D001736 1.5e-08 64.3 76 47.4
Haze_11903 Corylus avellana HOM05D003787 ORTHO05D001736 1.5e-08 64.3 117 36.8
THA.LOC104801821 Tarenaya hassleriana HOM05D003787 ORTHO05D001736 1.5e-08 64.3 73 47.9
Gohir.A05G306700 Gossypium hirsutum HOM05D003787 ORTHO05D001736 1.9e-08 63.9 112 38.4
Oeu044877.1 Olea europaea HOM05D006637 ORTHO05D001736 1.9e-08 63.9 60 61.7
Rhsim12G0148600 Rhododendron simsii HOM05D006637 ORTHO05D001736 1.9e-08 63.9 70 51.4
Sc04g0004350 Simmondsia chinensis HOM05D006637 ORTHO05D001736 1.9e-08 63.9 59 55.9
MD16G1060800 Malus domestica HOM05D003787 ORTHO05D001736 2.5e-08 63.5 99 42.4
AT2G03630 Arabidopsis thaliana HOM05D003787 ORTHO05D001736 3.2e-08 63.2 132 34.8
PSO017G7320 Papaver somniferum HOM05D006637 ORTHO05D001736 3.2e-08 63.2 44 63.6
RcHm_v2.0_Chr4g0438271 Rosa chinensis HOM05D003787 ORTHO05D001736 3.2e-08 63.2 96 39.6
Atru.chr8.428 Acer truncatum HOM05D003787 ORTHO05D001736 4.2e-08 62.8 62 53.2
CsaV3_5G033340 Cucumis sativus L. HOM05D003787 ORTHO05D001736 4.2e-08 62.8 54 59.3
DCAR_025433 Daucus carota HOM05D003787 ORTHO05D001736 4.2e-08 62.8 112 40.2
Dinv22776 Davidia involucrata HOM05D006637 ORTHO05D001736 4.2e-08 62.8 105 40.0
Glyma.13G056300 Glycine max HOM05D003787 ORTHO05D001736 4.2e-08 62.8 121 35.5
Gorai.013G094300 Gossypium raimondii HOM05D003787 ORTHO05D001736 4.2e-08 62.8 115 39.1
Thecc.03G102400 Theobroma cacao HOM05D006637 ORTHO05D001736 4.2e-08 62.8 179 32.4
Aqoxy3G03685 Aquilegia oxysepala HOM05D006637 ORTHO05D001736 5.5e-08 62.4 150 36.0
Gohir.D04G043300 Gossypium hirsutum HOM05D003787 ORTHO05D001736 5.5e-08 62.4 90 43.3
Gorai.012G048600 Gossypium raimondii HOM05D003787 ORTHO05D001736 5.5e-08 62.4 90 43.3
Lalb_Chr02g0158901 Lupinus albus HOM05D003787 ORTHO05D001736 5.5e-08 62.4 96 36.5
Thecc.04G095900 Theobroma cacao HOM05D003787 ORTHO05D001736 5.5e-08 62.4 91 41.8
Lj5C102T22 Lonicera japonica HOM05D006637 ORTHO05D001736 7.2e-08 62.0 63 55.6
Sc04g0007550 Simmondsia chinensis HOM05D003787 ORTHO05D001736 7.2e-08 62.0 102 43.1
TWI75G0087 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 7.2e-08 62.0 134 35.1
Actinidia04823 Actinidia chinensis HOM05D006637 ORTHO05D001736 9.4e-08 61.6 122 32.8
ClCG06G015610 Citrullus lanatus HOM05D006637 ORTHO05D001736 9.4e-08 61.6 61 55.7
DCAR_024124 Daucus carota HOM05D003787 ORTHO05D001736 9.4e-08 61.6 192 32.8
Duzib187G0666 Durio zibethinus HOM05D003787 ORTHO05D001736 9.4e-08 61.6 52 61.5
Hma1.2p1_0566F.1_g179820 Hydrangea macrophylla HOM05D003787 ORTHO05D001736 9.4e-08 61.6 91 47.3
Potri.012G061700 Populus trichocarpa HOM05D006637 ORTHO05D001736 9.4e-08 61.6 78 48.7
MELO3C022033.2 Cucumis melo HOM05D003787 ORTHO05D001736 1.2e-07 61.2 166 32.5
FAN07G1127 Fragaria x ananassa HOM05D005972 ORTHO05D007548 1.2e-07 61.2 111 41.4
Potri.017G094300 Populus trichocarpa HOM05D003787 ORTHO05D001736 1.2e-07 61.2 98 41.8
Zm00001eb305470 Zea mays HOM05D003787 ORTHO05D001736 1.2e-07 61.2 63 50.8
CsaV3_5G038510 Cucumis sativus L. HOM05D003787 ORTHO05D001736 1.6e-07 60.8 166 31.9
Gohir.D13G082500 Gossypium hirsutum HOM05D003787 ORTHO05D001736 1.6e-07 60.8 183 30.6
Lj2g0027532 Lotus japonicus HOM05D014318 ORTHO05D001736 1.6e-07 60.8 101 39.6
GSVIVG01007850001 Vitis vinifera HOM05D006637 ORTHO05D001736 1.6e-07 60.8 179 33.0
Duzib264G1237 Durio zibethinus HOM05D003787 ORTHO05D001736 2.1e-07 60.5 52 59.6
Eucgr.I02036 Eucalyptus grandis HOM05D003787 ORTHO05D001736 2.1e-07 60.5 72 50.0
Thhalv10005553m.g Eutrema salsugineum HOM05D003787 ORTHO05D001736 2.1e-07 60.5 99 41.4
Gohir.A05G372300 Gossypium hirsutum HOM05D003787 ORTHO05D001736 2.1e-07 60.5 90 43.3
Medtr6g015240 Medicago truncatula HOM05D003787 ORTHO05D001736 2.1e-07 60.5 85 44.7
AUR62007913 Chenopodium quinoa HOM05D000094 ORTHO05D002350 2.7e-07 60.1 57 57.9
Haze_07733 Corylus avellana HOM05D006637 ORTHO05D001736 2.7e-07 60.1 182 32.4
Gohir.A13G082800 Gossypium hirsutum HOM05D003787 ORTHO05D001736 2.7e-07 60.1 115 37.4
Manes.01G096200 Manihot esculenta HOM05D003787 ORTHO05D001736 2.7e-07 60.1 125 34.4
Psat1g068800 Pisum sativum HOM05D003787 ORTHO05D001736 2.7e-07 60.1 117 35.0
ATR1128G085 Amborella trichopoda HOM05D003787 ORTHO05D001736 3.6e-07 59.7 31 93.5
Cpa.g.sc1.128 Carica papaya HOM05D003787 ORTHO05D001736 3.6e-07 59.7 83 43.4
AUR62003095 Chenopodium quinoa HOM05D000094 ORTHO05D002350 3.6e-07 59.7 51 62.7
Ciclev10033684m.g Citrus clementina HOM05D003787 ORTHO05D001736 3.6e-07 59.7 83 38.6
Cc07_g04250 Coffea canephora HOM05D003787 ORTHO05D001736 3.6e-07 59.7 89 40.4
FAN12G3642 Fragaria x ananassa HOM05D005972 ORTHO05D007548 3.6e-07 59.7 111 41.4
Nitab4.5_0003841g0060 Nicotiana tabacum HOM05D003787 ORTHO05D001736 3.6e-07 59.7 69 52.2
Psat2g130920 Pisum sativum HOM05D014318 ORTHO05D001736 3.6e-07 59.7 64 50.0
HPP92_003197 Vanilla planifolia HOM05D003787 ORTHO05D001736 3.6e-07 59.7 99 39.4
Atru.chr11.1622 Acer truncatum HOM05D003787 ORTHO05D001736 4.7e-07 59.3 115 34.8
CSS0036361 Camellia sinensis var. sinensis HOM05D006637 ORTHO05D001736 4.7e-07 59.3 102 35.3
MELO3C017227.2 Cucumis melo HOM05D006637 ORTHO05D001736 4.7e-07 59.3 54 59.3
CsaV3_1G002960 Cucumis sativus L. HOM05D006637 ORTHO05D001736 4.7e-07 59.3 54 59.3
Migut.L01187 Erythranthe guttata HOM05D003787 ORTHO05D001736 4.7e-07 59.3 90 42.2
FAN17G0759 Fragaria x ananassa HOM05D003787 ORTHO05D001736 4.7e-07 59.3 111 40.5
PGR083G0945 Punica granatum HOM05D006637 ORTHO05D001736 4.7e-07 59.3 150 32.7
arahy.Tifrunner.gnm1.ann1.MG99FN Arachis hypogaea HOM05D003787 ORTHO05D001736 6.1e-07 58.9 44 65.9
arahy.Tifrunner.gnm1.ann1.NP9FW8 Arachis hypogaea HOM05D003787 ORTHO05D001736 6.1e-07 58.9 44 65.9
Duzib205G1030 Durio zibethinus HOM05D006637 ORTHO05D001736 6.1e-07 58.9 47 61.7
FvH4_4g29990 Fragaria vesca HOM05D003787 ORTHO05D001736 6.1e-07 58.9 109 41.3
Glyma.19G030300 Glycine max HOM05D003787 ORTHO05D001736 6.1e-07 58.9 99 42.4
MD06G1225400 Malus domestica HOM05D006637 ORTHO05D001736 6.1e-07 58.9 104 38.5
Sabra04G0069600 Salix brachista HOM05D003787 ORTHO05D001736 6.1e-07 58.9 124 33.1
Carub.0005s0277 Capsella rubella HOM05D003787 ORTHO05D001736 8.0e-07 58.5 108 36.1
Ca_04304_v3 Cicer arietinum L. HOM05D003787 ORTHO05D001736 8.0e-07 58.5 94 37.2
COL.COLO4_06852 Corchorus olitorius HOM05D006637 ORTHO05D001736 8.0e-07 58.5 130 36.2
Rhsim09G0127000 Rhododendron simsii HOM05D003787 ORTHO05D001736 8.0e-07 58.5 78 50.0
Sp5g29400 Schrenkiella parvula HOM05D006637 ORTHO05D001736 8.0e-07 58.5 64 51.6
HPP92_007004 Vanilla planifolia HOM05D003787 ORTHO05D001736 8.0e-07 58.5 72 48.6
ClCG11G004790 Citrullus lanatus HOM05D003787 ORTHO05D001736 1.0e-06 58.2 78 50.0
PGR004G1779 Punica granatum HOM05D003787 ORTHO05D001736 1.0e-06 58.2 191 30.4
Sed0008450 Sechium edule HOM05D006637 ORTHO05D001736 1.0e-06 58.2 131 36.6
TWI15G0882 Tripterygium wilfordii HOM05D006637 ORTHO05D001736 1.0e-06 58.2 132 31.1
CSS0033309 Camellia sinensis var. sinensis HOM05D006637 ORTHO05D001736 1.4e-06 57.8 42 61.9
Carub.0002s2101 Capsella rubella HOM05D006637 ORTHO05D001736 1.4e-06 57.8 50 60.0
Cpa.g.sc14.178 Carica papaya HOM05D003787 ORTHO05D001736 1.4e-06 57.8 85 43.5
Thhalv10018880m.g Eutrema salsugineum HOM05D006637 ORTHO05D001736 1.4e-06 57.8 64 51.6
Gorai.008G176900 Gossypium raimondii HOM05D039012 ORTHO05D001736 1.4e-06 57.8 110 32.7
CiPaw.03G088400 Carya illinoinensis HOM05D003787 ORTHO05D001736 1.8e-06 57.4 73 45.2
Gohir.D12G164300 Gossypium hirsutum HOM05D039012 ORTHO05D001736 1.8e-06 57.4 110 32.7
Peaxi162Scf00166g00047 Petunia axillaris HOM05D003787 ORTHO05D001736 1.8e-06 57.4 61 55.7
Solyc02g088840.3 Solanum lycopersicum HOM05D003787 ORTHO05D001736 1.8e-06 57.4 87 41.4
THA.LOC104808038 Tarenaya hassleriana HOM05D006637 ORTHO05D001736 1.8e-06 57.4 65 50.8
Dinv16736 Davidia involucrata HOM05D003787 ORTHO05D001736 2.3e-06 57.0 126 38.1
Duzib068G0311 Durio zibethinus HOM05D006637 ORTHO05D001736 2.3e-06 57.0 81 43.2
Potri.004G120400 Populus trichocarpa HOM05D003787 ORTHO05D001736 2.3e-06 57.0 81 44.4
Prupe.3G254700 Prunus persica HOM05D003787 ORTHO05D001736 2.3e-06 57.0 52 59.6
Rhsim10G0049700 Rhododendron simsii HOM05D003787 ORTHO05D001736 2.3e-06 57.0 51 56.9
AUR62008536 Chenopodium quinoa HOM05D006637 ORTHO05D001736 3.0e-06 56.6 182 32.4
Gorai.003G101400 Gossypium raimondii HOM05D006637 ORTHO05D001736 3.0e-06 56.6 97 36.1
Actinidia16162 Actinidia chinensis HOM05D003787 ORTHO05D001736 4.0e-06 56.2 88 42.0
Ah.02g126850 Amaranthus hybridus HOM05D003787 ORTHO05D001736 4.0e-06 56.2 44 63.6
Gohir.D03G096675 Gossypium hirsutum HOM05D006637 ORTHO05D001736 4.0e-06 56.2 65 46.2
Sed0011679 Sechium edule HOM05D003787 ORTHO05D001736 4.0e-06 56.2 57 54.4
Ciclev10023416m.g Citrus clementina HOM05D006637 ORTHO05D001736 5.2e-06 55.8 42 59.5
FvH4_5g13780 Fragaria vesca HOM05D006637 ORTHO05D001736 5.2e-06 55.8 61 54.1
FAN08G0389 Fragaria x ananassa HOM05D006637 ORTHO05D001736 5.2e-06 55.8 61 54.1
FAN18G2922 Fragaria x ananassa HOM05D006637 ORTHO05D001736 5.2e-06 55.8 61 54.1
Nitab4.5_0007320g0010 Nicotiana tabacum HOM05D003787 ORTHO05D001736 5.2e-06 55.8 223 30.5
Oeu007068.1 Olea europaea HOM05D003787 ORTHO05D001736 5.2e-06 55.8 52 57.7
Sc14g0007980 Simmondsia chinensis HOM05D003787 ORTHO05D001736 5.2e-06 55.8 43 60.5
FAN22G0001 Fragaria x ananassa HOM05D003787 ORTHO05D001736 6.8e-06 55.5 177 31.6
Gohir.A03G070200 Gossypium hirsutum HOM05D006637 ORTHO05D001736 6.8e-06 55.5 65 46.2
Medtr3g025960 Medicago truncatula HOM05D006637 ORTHO05D001736 6.8e-06 55.5 60 51.7
Sopen02g033550 Solanum pennellii HOM05D003787 ORTHO05D001736 6.8e-06 55.5 61 49.2
Aa31LG4G4510 Aethionema arabicum HOM05D006637 ORTHO05D001736 8.8e-06 55.1 89 39.3
Potri.015G057200 Populus trichocarpa HOM05D006637 ORTHO05D001736 8.8e-06 55.1 72 45.8
Sc12g0007280 Simmondsia chinensis HOM05D006637 ORTHO05D001736 8.8e-06 55.1 193 30.6
PGSC0003DMG400001359 Solanum tuberosum HOM05D003787 ORTHO05D001736 8.8e-06 55.1 61 49.2
vmacro10428 Vaccinium macrocarpon HOM05D003787 ORTHO05D001736 8.8e-06 55.1 87 44.8


User provided reference genes

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