Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1101G021 Amborella trichopoda HOM05D005487 ORTHO05D007280 5.3e-256 887.1 422 100.0
Nn1g07355 Nelumbo nucifera HOM05D005487 ORTHO05D007280 2.3e-211 738.8 422 81.0
TAR724G0004 Trochodendron aralioides HOM05D005487 ORTHO05D007280 5.7e-210 734.2 422 80.6
Nn1g03329 Nelumbo nucifera HOM05D005487 ORTHO05D007280 1.1e-208 729.9 422 79.9
TAR629G3393 Trochodendron aralioides HOM05D005487 ORTHO05D007280 3.5e-207 724.9 422 78.9
Cpa.g.sc75.119 Carica papaya HOM05D005487 ORTHO05D007280 1.1e-205 719.9 418 78.0
Duzib192G1033 Durio zibethinus HOM05D005487 ORTHO05D007280 1.6e-204 716.1 418 78.2
CiPaw.10G077700 Carya illinoinensis HOM05D005487 ORTHO05D007280 2.8e-204 715.3 419 78.5
Thecc.06G232800 Theobroma cacao HOM05D005487 ORTHO05D007280 4.7e-204 714.5 419 78.0
CSS0007892 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 8.8e-203 710.3 422 77.7
MBI19_g29429_MAGBIO Magnolia biondii HOM05D005487 ORTHO05D007280 1.2e-202 709.9 420 78.8
Cfa000109 Carpinus fangiana HOM05D005487 ORTHO05D007280 2.0e-202 709.1 419 78.5
QL05p069756 Quercus lobata HOM05D005487 ORTHO05D007280 4.4e-202 708.0 419 78.3
Atru.chr1.2460 Acer truncatum HOM05D005487 ORTHO05D007280 1.7e-201 706.1 419 78.5
PGR004G0814 Punica granatum HOM05D005487 ORTHO05D007280 3.7e-201 704.9 419 76.6
FvH4_3g01030 Fragaria vesca HOM05D005487 ORTHO05D007280 4.9e-201 704.5 418 78.0
Manes.09G070300 Manihot esculenta HOM05D005487 ORTHO05D007280 8.3e-201 703.7 420 77.6
PSO764G0115 Papaver somniferum HOM05D005487 ORTHO05D007280 5.4e-200 701.0 422 77.0
RcHm_v2.0_Chr5g0001571 Rosa chinensis HOM05D005487 ORTHO05D007280 5.4e-200 701.0 420 78.1
Ciclev10015367m.g Citrus clementina HOM05D005487 ORTHO05D007280 1.2e-199 699.9 419 76.6
COL.COLO4_31878 Corchorus olitorius HOM05D005487 ORTHO05D007280 1.2e-199 699.9 415 77.3
MD10G1331100 Malus domestica HOM05D005487 ORTHO05D007280 2.0e-199 699.1 420 78.8
PSO210G3736 Papaver somniferum HOM05D005487 ORTHO05D007280 2.7e-199 698.7 420 76.4
Prupe.4G011100 Prunus persica HOM05D005487 ORTHO05D007280 5.9e-199 697.6 419 77.3
FAN21G2054 Fragaria x ananassa HOM05D005487 ORTHO05D007280 1.7e-198 696.0 418 77.5
Sed0025030 Sechium edule HOM05D005487 ORTHO05D007280 8.6e-198 693.7 422 76.1
CsaV3_6G048520 Cucumis sativus L. HOM05D005487 ORTHO05D007280 1.5e-197 693.0 419 76.6
Oeu044422.1 Olea europaea HOM05D005487 ORTHO05D007280 1.9e-197 692.6 419 75.7
Actinidia11881 Actinidia chinensis HOM05D005487 ORTHO05D007280 3.3e-197 691.8 419 76.8
Actinidia26862 Actinidia chinensis HOM05D005487 ORTHO05D007280 3.3e-197 691.8 420 76.2
Gorai.009G182900 Gossypium raimondii HOM05D005487 ORTHO05D007280 3.3e-197 691.8 418 76.3
Gohir.A05G174500 Gossypium hirsutum HOM05D005487 ORTHO05D007280 4.3e-197 691.4 418 76.1
GSVIVG01003351001 Vitis vinifera HOM05D005487 ORTHO05D007280 7.3e-197 690.6 419 75.2
MELO3C007433.2 Cucumis melo HOM05D005487 ORTHO05D007280 2.8e-196 688.7 419 76.1
Gohir.A06G205600 Gossypium hirsutum HOM05D005487 ORTHO05D007280 2.8e-196 688.7 418 76.1
Gorai.010G250300 Gossypium raimondii HOM05D005487 ORTHO05D007280 3.6e-196 688.3 418 75.6
TWI38G0871 Tripterygium wilfordii HOM05D005487 ORTHO05D007280 4.7e-196 688.0 419 75.7
Hma1.2p1_0135F.1_g061730 Hydrangea macrophylla HOM05D005487 ORTHO05D007280 8.0e-196 687.2 418 75.8
Potri.006G009200 Populus trichocarpa HOM05D005487 ORTHO05D007280 8.0e-196 687.2 419 76.1
arahy.Tifrunner.gnm1.ann1.8PBE23 Arachis hypogaea HOM05D005487 ORTHO05D007280 1.8e-195 686.0 419 75.4
Gohir.D06G215900 Gossypium hirsutum HOM05D005487 ORTHO05D007280 1.8e-195 686.0 418 75.4
Nitab4.5_0000143g0260 Nicotiana tabacum HOM05D005487 ORTHO05D007280 1.8e-195 686.0 419 76.1
Gohir.D05G177500 Gossypium hirsutum HOM05D005487 ORTHO05D007280 3.0e-195 685.3 418 75.6
arahy.Tifrunner.gnm1.ann1.61KG5W Arachis hypogaea HOM05D005487 ORTHO05D007280 4.0e-195 684.9 419 75.4
HanXRQChr10g0284101 Helianthus annuus HOM05D005487 ORTHO05D007280 4.0e-195 684.9 422 74.6
CANSAT56G2574 Cannabis sativa HOM05D005487 ORTHO05D007280 1.2e-194 683.3 420 74.8
ClCG01G021500 Citrullus lanatus HOM05D005487 ORTHO05D007280 2.0e-194 682.6 419 75.4
Nitab4.5_0001198g0060 Nicotiana tabacum HOM05D005487 ORTHO05D007280 2.6e-194 682.2 419 75.9
Rhsim13G0146300 Rhododendron simsii HOM05D005487 ORTHO05D007280 2.6e-194 682.2 446 72.4
HPP92_003014 Vanilla planifolia HOM05D005487 ORTHO05D007280 3.4e-194 681.8 427 74.7
Eucgr.L00543 Eucalyptus grandis HOM05D005487 ORTHO05D007280 9.8e-194 680.2 452 71.2
RhsimUnG0109400 Rhododendron simsii HOM05D005487 ORTHO05D007280 9.8e-194 680.2 446 72.2
HPP92_027542 Vanilla planifolia HOM05D005487 ORTHO05D007280 9.8e-194 680.2 428 74.5
Lj2C262G3 Lonicera japonica HOM05D005487 ORTHO05D007280 2.9e-193 678.7 414 75.6
Psat1g176520 Pisum sativum HOM05D005487 ORTHO05D007280 2.9e-193 678.7 417 73.9
Dinv07399 Davidia involucrata HOM05D005487 ORTHO05D007280 4.9e-193 677.9 401 77.8
Aqoxy1G04106 Aquilegia oxysepala HOM05D005487 ORTHO05D007280 8.3e-193 677.2 423 74.2
Lj6g0015557 Lotus japonicus HOM05D005487 ORTHO05D007280 8.3e-193 677.2 416 75.5
CARHR012410 Cardamine hirsuta HOM05D005487 ORTHO05D007280 4.1e-192 674.9 418 73.7
Lalb_Chr15g0087971 Lupinus albus HOM05D005487 ORTHO05D007280 5.4e-192 674.5 418 74.4
Ca_00719_v3 Cicer arietinum L. HOM05D005487 ORTHO05D007280 9.2e-192 673.7 416 74.3
Medtr2g025640 Medicago truncatula HOM05D005487 ORTHO05D007280 1.2e-191 673.3 416 72.8
Lsat_1_v5_gn_8_64401 Lactuca sativa HOM05D005487 ORTHO05D007280 1.6e-191 672.9 426 74.6
BcaB02g06431 Brassica carinata HOM05D005487 ORTHO05D007280 2.0e-191 672.5 419 73.3
TPR.G13057 Trifolium pratense HOM05D005487 ORTHO05D007280 7.8e-191 670.6 417 72.9
EL10Ac8g20177 Beta vulgaris HOM05D005487 ORTHO05D007280 1.0e-190 670.2 419 73.5
Sopen11g006950 Solanum pennellii HOM05D005487 ORTHO05D007280 1.0e-190 670.2 422 73.9
Cc09_g00910 Coffea canephora HOM05D005487 ORTHO05D007280 1.7e-190 669.5 419 73.3
Glyma.15G114300 Glycine max HOM05D005487 ORTHO05D007280 1.7e-190 669.5 417 72.4
Solyc11g012160.2 Solanum lycopersicum HOM05D005487 ORTHO05D007280 1.7e-190 669.5 422 73.5
Carub.0001s1173 Capsella rubella HOM05D005487 ORTHO05D007280 2.3e-190 669.1 418 73.0
CAN.G1186.29 Capsicum annuum HOM05D005487 ORTHO05D007280 3.0e-190 668.7 423 74.7
Sp1g10720 Schrenkiella parvula HOM05D005487 ORTHO05D007280 5.0e-190 667.9 418 72.5
Phvul.006G143500 Phaseolus vulgaris HOM05D005487 ORTHO05D007280 6.6e-190 667.5 417 73.1
VMungo0540G1792 Vigna mungo HOM05D005487 ORTHO05D007280 6.6e-190 667.5 417 73.6
Glyma.09G010000 Glycine max HOM05D005487 ORTHO05D007280 8.6e-190 667.2 417 73.1
BolC5t29858H Brassica oleracea HOM05D005487 ORTHO05D007280 1.1e-189 666.8 418 72.7
Thhalv10007724m.g Eutrema salsugineum HOM05D005487 ORTHO05D007280 1.1e-189 666.8 418 73.0
AL1G23300 Arabidopsis lyrata HOM05D005487 ORTHO05D007280 1.5e-189 666.4 417 72.9
THA.LOC104809472 Tarenaya hassleriana HOM05D005487 ORTHO05D007280 5.6e-189 664.5 418 73.4
AUR62021869 Chenopodium quinoa HOM05D005487 ORTHO05D007280 7.3e-189 664.1 421 73.6
FAN25G0861 Fragaria x ananassa HOM05D005487 ORTHO05D007280 7.3e-189 664.1 398 78.4
AT1G12050 Arabidopsis thaliana HOM05D005487 ORTHO05D007280 3.6e-188 661.8 417 72.9
Peaxi162Scf00558g00518 Petunia axillaris HOM05D005487 ORTHO05D007280 3.1e-187 658.7 459 68.6
SalBow8G2024 Salvia bowleyana HOM05D005487 ORTHO05D007280 4.0e-187 658.3 420 72.4
MSTRG.16025 Avicennia marina HOM05D005487 ORTHO05D007280 6.8e-187 657.5 419 72.3
Aa31LG1G2680 Aethionema arabicum HOM05D005487 ORTHO05D007280 4.9e-185 651.4 418 71.3
CAN.G1263.14 Capsicum annuum HOM05D005487 ORTHO05D007280 2.4e-184 649.0 420 71.7
Sopen04g006840 Solanum pennellii HOM05D005487 ORTHO05D007280 5.4e-184 647.9 419 71.4
vmacro03645 Vaccinium macrocarpon HOM05D005487 ORTHO05D007280 5.4e-184 647.9 409 75.3
CDE07G0927 Ceratophyllum demersum HOM05D005487 ORTHO05D007280 9.2e-184 647.1 428 70.6
PGSC0003DMG400023608 Solanum tuberosum HOM05D005487 ORTHO05D007280 2.7e-183 645.6 419 71.1
BcaC05g25225 Brassica carinata HOM05D005487 ORTHO05D007280 1.9e-181 639.4 403 73.0
C05p11110 Brassica napus HOM05D005487 ORTHO05D007280 4.3e-181 638.3 403 73.0
PGSC0003DMG400013273 Solanum tuberosum HOM05D005487 ORTHO05D007280 9.5e-181 637.1 504 62.3
Hund23409 Selenicereus undatus HOM05D005487 ORTHO05D007280 2.1e-180 636.0 396 75.0
BraA06t24129Z Brassica rapa HOM05D005487 ORTHO05D007280 2.8e-180 635.6 404 72.5
A06p09440 Brassica napus HOM05D005487 ORTHO05D007280 4.7e-180 634.8 404 72.5
Solyc04g014730.4 Solanum lycopersicum HOM05D005487 ORTHO05D007280 4.7e-180 634.8 413 70.7
Os02g0196800 Oryza sativa ssp. japonica HOM05D005487 ORTHO05D007280 1.4e-179 633.3 421 67.9
Peaxi162Scf00442g00414 Petunia axillaris HOM05D005487 ORTHO05D007280 3.1e-179 632.1 456 65.8
Haze_06922 Corylus avellana HOM05D005487 ORTHO05D007280 4.0e-179 631.7 433 70.4
SGA_v2.0_scaffold7G03757 Striga asiatica HOM05D005487 ORTHO05D007280 5.2e-179 631.3 429 69.2
Haze_06917 Corylus avellana HOM05D005487 ORTHO05D007280 2.4e-176 622.5 457 67.0
Zm00001eb236160 Zea mays HOM05D005487 ORTHO05D007280 9.2e-176 620.5 420 67.1
unitig_0.g999 Utricularia gibba HOM05D005487 ORTHO05D007280 1.1e-173 613.6 387 73.6
DCAR_027826 Daucus carota HOM05D005487 ORTHO05D007280 1.6e-167 593.2 420 67.1
Pp3c4_7990 Physcomitrium patens HOM05D005487 ORTHO05D007280 1.9e-165 586.3 420 64.8
Sabra06G0007000 Salix brachista HOM05D005487 ORTHO05D007280 1.9e-165 586.3 416 68.5
SMO137G0224 Selaginella moellendorffii HOM05D005487 ORTHO05D007280 9.6e-165 583.9 417 65.7
AUR62012785 Chenopodium quinoa HOM05D005487 ORTHO05D007280 4.0e-163 578.6 402 69.4
Duzib235G0086 Durio zibethinus HOM05D005487 ORTHO05D007280 5.2e-163 578.2 375 73.3
Mapoly0022s0035 Marchantia polymorpha HOM05D005487 ORTHO05D007280 4.4e-162 575.1 417 62.6
AagrBONN_evm.TU.Sc2ySwM_344.3343 Anthoceros agrestis HOM05D005487 ORTHO05D007280 3.6e-156 555.4 418 61.7
Migut.M01391 Erythranthe guttata HOM05D005487 ORTHO05D007280 1.3e-148 530.4 422 62.3
Zm00001eb205930 Zea mays HOM05D005487 ORTHO05D007280 2.1e-148 529.6 358 67.0
Sc17g0007720 Simmondsia chinensis HOM05D005487 ORTHO05D007280 6.2e-148 528.1 301 78.7
CSS0007230 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 4.9e-145 518.5 441 60.5
Pp3c13_16620 Physcomitrium patens HOM05D005487 ORTHO05D007280 7.4e-141 504.6 358 66.2
Ah.09g234260 Amaranthus hybridus HOM05D005487 ORTHO05D007280 6.2e-140 501.5 422 60.0
Haze_26411 Corylus avellana HOM05D005487 ORTHO05D007280 2.7e-135 486.1 424 54.0
ECA236G3803 Erigeron canadensis HOM05D005487 ORTHO05D007280 1.9e-128 463.4 269 78.8
CBR_g46703 Chara braunii HOM05D005487 ORTHO05D007280 1.4e-120 437.2 468 47.4
RcHm_v2.0_Chr3g0477951 Rosa chinensis HOM05D005487 ORTHO05D007280 1.0e-118 431.0 463 51.8
RcHm_v2.0_Chr3g0484131 Rosa chinensis HOM05D005487 ORTHO05D007280 1.1e-117 427.6 464 51.1
Cre17.g732802 Chlamydomonas reinhardtii HOM05D005487 ORTHO05D007280 1.3e-116 424.1 469 46.3
PRCOL_00001448 Prasinoderma coloniale HOM05D005487 ORTHO05D007280 1.3e-108 397.5 422 49.3
Gorai.001G209700 Gossypium raimondii HOM05D005487 ORTHO05D007280 7.1e-43 179.1 116 69.0
SEGI_36702 Sequoiadendron giganteum HOM05D005487 ORTHO05D007280 2.8e-31 140.6 93 73.1
Gohir.D07G188750 Gossypium hirsutum HOM05D005487 ORTHO05D007280 3.2e-27 127.1 116 52.6
RcHm_v2.0_Chr5g0003621 Rosa chinensis HOM05D005487 ORTHO05D007280 6.0e-26 122.9 81 74.1
C06p15210 Brassica napus HOM05D005487 ORTHO05D042797 1.6e-23 114.8 89 58.4
BolC6t36696H Brassica oleracea HOM05D005487 ORTHO05D042797 1.6e-23 114.8 89 58.4
COL.COLO4_27266 Corchorus olitorius HOM05D000025 ORTHO05D000040 2.3e-17 94.4 95 52.6
Gohir.D13G151750 Gossypium hirsutum HOM05D005487 ORTHO05D007280 2.8e-15 87.4 55 70.9
BcaC08g44100 Brassica carinata HOM05D005487 ORTHO05D027150 1.1e-14 85.5 70 54.3
BcaC04g21976 Brassica carinata HOM05D005487 ORTHO05D027150 4.1e-14 83.6 71 54.9
BolC9t55424H Brassica oleracea HOM05D005487 ORTHO05D027150 1.2e-13 82.0 66 57.6
C09p25260 Brassica napus HOM05D005487 ORTHO05D027150 1.1e-11 75.5 66 53.0
SEGI_21127 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 1.6e-10 71.6 68 52.9
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 2.2e-07 61.2 200 26.0
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 8.2e-07 59.3 162 29.0


User provided reference genes

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