Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1101G015 Amborella trichopoda HOM05D005760 ORTHO05D007113 3.6e-76 288.1 141 100.0
ATR0003G012 Amborella trichopoda HOM05D005760 ORTHO05D007113 1.1e-43 180.3 156 64.7
PSO170G3854 Papaver somniferum HOM05D005760 ORTHO05D007113 1.5e-21 106.7 67 71.6
Glyma.02G158100 Glycine max HOM05D005760 ORTHO05D007113 4.4e-21 105.1 97 54.6
arahy.Tifrunner.gnm1.ann1.BNJ0D6 Arachis hypogaea HOM05D005760 ORTHO05D007113 5.7e-21 104.8 71 69.0
arahy.Tifrunner.gnm1.ann1.H1JXTH Arachis hypogaea HOM05D005760 ORTHO05D007113 5.7e-21 104.8 71 69.0
Lalb_Chr03g0036151 Lupinus albus HOM05D005760 ORTHO05D007113 7.4e-21 104.4 71 66.2
Phvul.007G245600 Phaseolus vulgaris HOM05D005760 ORTHO05D007113 1.3e-20 103.6 71 69.0
Medtr1g050670 Medicago truncatula HOM05D005760 ORTHO05D007113 1.7e-20 103.2 71 64.8
TPR.G22709 Trifolium pratense HOM05D005760 ORTHO05D007113 1.7e-20 103.2 71 64.8
CANSAT78G0610 Cannabis sativa HOM05D005760 ORTHO05D007113 2.2e-20 102.8 67 68.7
Lj5g0008525 Lotus japonicus HOM05D005760 ORTHO05D007113 2.2e-20 102.8 71 64.8
Dinv41715 Davidia involucrata HOM05D005760 ORTHO05D007113 2.8e-20 102.4 74 63.5
Ca_11749_v3 Cicer arietinum L. HOM05D005760 ORTHO05D007113 3.7e-20 102.1 71 64.8
Nn1g08372 Nelumbo nucifera HOM05D005760 ORTHO05D007113 3.7e-20 102.1 96 52.1
Psat6g094080 Pisum sativum HOM05D005760 ORTHO05D007113 3.7e-20 102.1 90 54.4
SEGI_03904 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 3.7e-20 102.1 63 74.6
PSO782G3241 Papaver somniferum HOM05D005760 ORTHO05D007113 4.8e-20 101.7 67 70.1
VMungo0720G1167 Vigna mungo HOM05D005760 ORTHO05D007113 4.8e-20 101.7 71 67.6
Potri.019G083100 Populus trichocarpa HOM05D005760 ORTHO05D007113 6.3e-20 101.3 80 60.0
MD05G1041500 Malus domestica HOM05D005760 ORTHO05D007113 8.2e-20 100.9 67 70.1
MD10G1047900 Malus domestica HOM05D005760 ORTHO05D007113 8.2e-20 100.9 67 68.7
Nitab4.5_0000303g0150 Nicotiana tabacum HOM05D005760 ORTHO05D007113 8.2e-20 100.9 65 69.2
Nitab4.5_0002500g0010 Nicotiana tabacum HOM05D005760 ORTHO05D007113 8.2e-20 100.9 65 69.2
Prupe.8G057200 Prunus persica HOM05D005760 ORTHO05D007113 8.2e-20 100.9 67 70.1
MSTRG.25441 Avicennia marina HOM05D005760 ORTHO05D007113 1.1e-19 100.5 80 61.2
Cfa013846 Carpinus fangiana HOM05D005760 ORTHO05D007113 1.1e-19 100.5 67 67.2
Haze_22520 Corylus avellana HOM05D005760 ORTHO05D007113 1.1e-19 100.5 67 67.2
Oeu000547.3 Olea europaea HOM05D005760 ORTHO05D007113 1.4e-19 100.1 65 67.7
SalBow7G4130 Salvia bowleyana HOM05D005760 ORTHO05D007113 1.4e-19 100.1 80 61.2
Thecc.08G184000 Theobroma cacao HOM05D005760 ORTHO05D007113 1.4e-19 100.1 65 69.2
Atru.chr13.1758 Acer truncatum HOM05D005760 ORTHO05D007113 1.8e-19 99.8 66 66.7
CARHR034440 Cardamine hirsuta HOM05D005760 ORTHO05D007113 1.8e-19 99.8 80 61.2
Hma1.2p1_0004F.1_g004045 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 1.8e-19 99.8 65 67.7
Hma1.2p1_0004F.1_g004050 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 1.8e-19 99.8 65 67.7
GSVIVG01034473001 Vitis vinifera HOM05D005760 ORTHO05D007113 1.8e-19 99.8 67 65.7
Thhalv10001809m.g Eutrema salsugineum HOM05D005760 ORTHO05D007113 2.4e-19 99.4 80 61.2
Manes.18G101200 Manihot esculenta HOM05D005760 ORTHO05D007113 3.1e-19 99.0 67 70.1
TWI34G1956 Tripterygium wilfordii HOM05D005760 ORTHO05D007113 3.1e-19 99.0 65 69.2
Aqoxy6G00127 Aquilegia oxysepala HOM05D005760 ORTHO05D007113 4.1e-19 98.6 67 70.1
TAR628G1581 Trochodendron aralioides HOM05D005760 ORTHO05D007113 4.1e-19 98.6 67 67.2
ClCG11G008140 Citrullus lanatus HOM05D005760 ORTHO05D007113 5.3e-19 98.2 67 64.2
Sabra19G0094600 Salix brachista HOM05D005760 ORTHO05D007113 5.3e-19 98.2 67 68.7
Ciclev10000028m.g Citrus clementina HOM05D005760 ORTHO05D007113 6.9e-19 97.8 67 62.7
Peaxi162Scf00268g01123 Petunia axillaris HOM05D005760 ORTHO05D007113 6.9e-19 97.8 64 68.8
CiPaw.08G058900 Carya illinoinensis HOM05D005760 ORTHO05D007113 9.1e-19 97.4 67 67.2
AUR62004640 Chenopodium quinoa HOM05D005760 ORTHO05D007113 9.1e-19 97.4 67 65.7
THA.LOC104806788 Tarenaya hassleriana HOM05D005760 ORTHO05D007113 9.1e-19 97.4 67 67.2
Actinidia23335 Actinidia chinensis HOM05D005760 ORTHO05D007113 1.2e-18 97.1 75 60.0
AT1G35660 Arabidopsis thaliana HOM05D005760 ORTHO05D007113 1.2e-18 97.1 65 69.2
AUR62022696 Chenopodium quinoa HOM05D005760 ORTHO05D007113 1.2e-18 97.1 67 65.7
Eucgr.F04123 Eucalyptus grandis HOM05D005760 ORTHO05D007113 1.2e-18 97.1 65 66.2
Carub.0001s3325 Capsella rubella HOM05D005760 ORTHO05D007113 1.5e-18 96.7 80 58.8
Solyc06g065360.3 Solanum lycopersicum HOM05D005760 ORTHO05D007113 1.5e-18 96.7 65 64.6
Sopen06g023840 Solanum pennellii HOM05D005760 ORTHO05D007113 1.5e-18 96.7 65 64.6
AL1G50540 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 2.0e-18 96.3 80 60.0
Cc10_g10700 Coffea canephora HOM05D005760 ORTHO05D007113 2.0e-18 96.3 66 66.7
Duzib116G0663 Durio zibethinus HOM05D005760 ORTHO05D007113 2.0e-18 96.3 65 66.2
SGA_v2.0_scaffold118G32485 Striga asiatica HOM05D005760 ORTHO05D007113 2.0e-18 96.3 65 67.7
EL10Ac1g00088 Beta vulgaris HOM05D005760 ORTHO05D007113 2.6e-18 95.9 67 65.7
BcaB07g33624 Brassica carinata HOM05D005760 ORTHO05D007113 3.4e-18 95.5 80 58.8
BcaC08g43328 Brassica carinata HOM05D005760 ORTHO05D007113 3.4e-18 95.5 80 58.8
C06p06840 Brassica napus HOM05D005760 ORTHO05D007113 3.4e-18 95.5 80 58.8
BolC6t35790H Brassica oleracea HOM05D005760 ORTHO05D007113 3.4e-18 95.5 80 58.8
FAN15G1969 Fragaria x ananassa HOM05D005760 ORTHO05D007113 3.4e-18 95.5 67 62.7
FAN24G1577 Fragaria x ananassa HOM05D005760 ORTHO05D007113 3.4e-18 95.5 67 62.7
Rhsim06G0094000 Rhododendron simsii HOM05D005760 ORTHO05D007113 3.4e-18 95.5 74 59.5
Sp1g30370 Schrenkiella parvula HOM05D005760 ORTHO05D007113 3.4e-18 95.5 80 58.8
SpUn0216_0010 Schrenkiella parvula HOM05D005760 ORTHO05D007113 3.4e-18 95.5 80 58.8
A06p02320 Brassica napus HOM05D005760 ORTHO05D007113 4.5e-18 95.1 80 58.8
BraA06t23439Z Brassica rapa HOM05D005760 ORTHO05D007113 4.5e-18 95.1 80 58.8
MELO3C008121.2 Cucumis melo HOM05D005760 ORTHO05D007113 4.5e-18 95.1 67 62.7
CsaV3_2G033490 Cucumis sativus L. HOM05D005760 ORTHO05D007113 4.5e-18 95.1 67 62.7
FvH4_2g11773 Fragaria vesca HOM05D005760 ORTHO05D007113 5.9e-18 94.7 67 62.7
Sed0013995 Sechium edule HOM05D005760 ORTHO05D007113 5.9e-18 94.7 67 64.2
vmacro12489 Vaccinium macrocarpon HOM05D005760 ORTHO05D007113 5.9e-18 94.7 67 65.7
CSS0014231 Camellia sinensis var. sinensis HOM05D005760 ORTHO05D007113 7.7e-18 94.4 67 64.2
Gohir.A05G250600 Gossypium hirsutum HOM05D005760 ORTHO05D007113 7.7e-18 94.4 69 66.7
Gohir.D05G253200 Gossypium hirsutum HOM05D005760 ORTHO05D007113 7.7e-18 94.4 69 66.7
Gorai.009G263800 Gossypium raimondii HOM05D005760 ORTHO05D007113 7.7e-18 94.4 69 66.7
Os01g0873800 Oryza sativa ssp. japonica HOM05D005760 ORTHO05D007113 1.0e-17 94.0 71 62.0
RcHm_v2.0_Chr6g0272031 Rosa chinensis HOM05D005760 ORTHO05D007113 1.0e-17 94.0 67 64.2
Hund27088 Selenicereus undatus HOM05D005760 ORTHO05D007113 1.0e-17 94.0 65 64.6
COL.COLO4_04233 Corchorus olitorius HOM05D005760 ORTHO05D007113 1.3e-17 93.6 65 64.6
CAN.G199.9 Capsicum annuum HOM05D005760 ORTHO05D007113 2.2e-17 92.8 65 63.1
DCAR_001048 Daucus carota HOM05D005760 ORTHO05D007113 2.2e-17 92.8 67 61.2
QL02p033685 Quercus lobata HOM05D005760 ORTHO05D007113 2.2e-17 92.8 65 66.2
Zm00001eb146280 Zea mays HOM05D005760 ORTHO05D007113 2.2e-17 92.8 65 67.7
Lj4A496G12 Lonicera japonica HOM05D005760 ORTHO05D007113 5.0e-17 91.7 64 62.5
Lj4C503G3 Lonicera japonica HOM05D005760 ORTHO05D007113 5.0e-17 91.7 79 53.2
Migut.C01256 Erythranthe guttata HOM05D005760 ORTHO05D007113 1.4e-16 90.1 67 62.7
Aa31LG6G8840 Aethionema arabicum HOM05D005760 ORTHO05D007113 1.9e-16 89.7 64 68.8
SHI09011 Sapria himalayana HOM05D005760 ORTHO05D007113 1.9e-16 89.7 65 60.0
Lsat_1_v5_gn_1_10440 Lactuca sativa HOM05D005760 ORTHO05D007113 2.5e-16 89.4 67 56.7
PGR102G0553 Punica granatum HOM05D005760 ORTHO05D007113 3.2e-16 89.0 64 60.9
Ah.05g178160 Amaranthus hybridus HOM05D005760 ORTHO05D007113 5.5e-16 88.2 67 58.2
ECA152G0004 Erigeron canadensis HOM05D005760 ORTHO05D007113 9.4e-16 87.4 67 59.7
HanXRQChr04g0107521 Helianthus annuus HOM05D005760 ORTHO05D007113 1.6e-15 86.7 80 51.2
Sc23g0001270 Simmondsia chinensis HOM05D005760 ORTHO05D007113 1.0e-14 84.0 80 52.5
Mapoly0036s0148 Marchantia polymorpha HOM05D005760 ORTHO05D007113 6.7e-14 81.3 67 56.7
unitig_0.g275 Utricularia gibba HOM05D005760 ORTHO05D007113 6.7e-14 81.3 69 59.4
Pp3c15_6360 Physcomitrium patens HOM05D005760 ORTHO05D007113 2.6e-13 79.3 73 53.4
Pp3c15_6380 Physcomitrium patens HOM05D005760 ORTHO05D007113 2.6e-13 79.3 73 53.4
AagrBONN_evm.TU.Sc2ySwM_117.2253 Anthoceros agrestis HOM05D005760 ORTHO05D007113 2.8e-12 75.9 68 50.0
Cpa.g.sc66.39 Carica papaya HOM05D005760 ORTHO05D007113 3.5e-10 68.9 56 55.4
CBR_g40969 Chara braunii HOM05D005760 ORTHO05D007113 3.8e-09 65.5 67 50.7
QL02p033652 Quercus lobata HOM05D005760 ORTHO05D007113 6.5e-09 64.7 82 41.5
QL02p033674 Quercus lobata HOM05D005760 ORTHO05D007113 5.5e-08 61.6 49 57.1


User provided reference genes

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